Date: Fri, 20 Mar 2020 18:14:24 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r528792 - head/biology/canu Message-ID: <202003201814.02KIEOKq043598@repo.freebsd.org>
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Author: jwb Date: Fri Mar 20 18:14:23 2020 New Revision: 528792 URL: https://svnweb.freebsd.org/changeset/ports/528792 Log: biology/canu: Upgrade to 2.0 Several routine enhancements and bug fixes Reported by: portscout Modified: head/biology/canu/Makefile head/biology/canu/distinfo head/biology/canu/pkg-plist Modified: head/biology/canu/Makefile ============================================================================== --- head/biology/canu/Makefile Fri Mar 20 17:44:37 2020 (r528791) +++ head/biology/canu/Makefile Fri Mar 20 18:14:23 2020 (r528792) @@ -2,8 +2,7 @@ PORTNAME= canu DISTVERSIONPREFIX= v -DISTVERSION= 1.9 -PORTREVISION= 1 +DISTVERSION= 2.0 CATEGORIES= biology java perl5 MAINTAINER= jwb@FreeBSD.org @@ -41,9 +40,6 @@ pre-configure: -e 's|-funroll-loops||g' \ -e 's|-fexpensive-optimizations||g' \ ${WRKSRC}/Makefile - @${REINPLACE_CMD} \ - -e 's|\\$$bin/mhap-|${JAVAJARDIR}/mhap-|g' \ - ${WRKSRC}/pipelines/canu/OverlapMhap.pm @${REINPLACE_CMD} \ -e 's|RealBin/lib|RealBin/../${SITE_PERL_REL}/canu|g' \ ${WRKSRC}/pipelines/canu.pl Modified: head/biology/canu/distinfo ============================================================================== --- head/biology/canu/distinfo Fri Mar 20 17:44:37 2020 (r528791) +++ head/biology/canu/distinfo Fri Mar 20 18:14:23 2020 (r528792) @@ -1,3 +1,3 @@ -TIMESTAMP = 1573142752 -SHA256 (marbl-canu-v1.9_GH0.tar.gz) = 6b086ab6086c050752166500378bc4b3b3543d4c617863e894d296171cee3385 -SIZE (marbl-canu-v1.9_GH0.tar.gz) = 3410307 +TIMESTAMP = 1584624503 +SHA256 (marbl-canu-v2.0_GH0.tar.gz) = e2e6e8b5ec4dd4cfba5e372f4a64b2c01fbd544d4b5867746021f10771a6f4ef +SIZE (marbl-canu-v2.0_GH0.tar.gz) = 3443777 Modified: head/biology/canu/pkg-plist ============================================================================== --- head/biology/canu/pkg-plist Fri Mar 20 17:44:37 2020 (r528791) +++ head/biology/canu/pkg-plist Fri Mar 20 18:14:23 2020 (r528792) @@ -41,7 +41,6 @@ bin/sequence bin/splitHaplotype bin/splitReads bin/sqStoreCreate -bin/sqStoreCreatePartition bin/sqStoreDumpFASTQ bin/sqStoreDumpMetaData bin/tgStoreCompress
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