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Date:      Sun, 5 May 2019 01:57:48 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 112arm64-quarterly][biology/mummer] Failed for mummer-4.0.0.b2.2_1 in build
Message-ID:  <201905050157.x451vmdg073649@thunderx1.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q2/biology/mummer/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://thunderx1.nyi.freebsd.org/data/112arm64-quarterly/500840/logs/mummer-4.0.0.b2.2_1.log
Build URL:      http://thunderx1.nyi.freebsd.org/build.html?mastername=112arm64-quarterly&build=500840
Log:

=>> Building biology/mummer
build started at Sun May  5 01:52:59 UTC 2019
port directory: /usr/ports/biology/mummer
package name: mummer-4.0.0.b2.2_1
building for: FreeBSD 112arm64-quarterly-job-09 11.2-RELEASE-p9 FreeBSD 11.2-RELEASE-p9 1102000 arm64
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q2/biology/mummer/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300002
Jail OSVERSION: 1102000
Job Id: 09

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1102000
UNAME_v=FreeBSD 11.2-RELEASE-p9 1102000
UNAME_r=11.2-RELEASE-p9
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-3-g02cc9753
MASTERMNT=/usr/local/poudriere/data/.m/112arm64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/112arm64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=112arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/112arm64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--disable-static --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mummer/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mummer/work  HOME=/wrkdirs/usr/ports/biology/mummer/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mummer/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mummer/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mummer/work  HOME=/wrkdirs/usr/ports/biology/mummer/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mummer/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1  PERL_VER=5.28  PERL5_MAN1=lib/perl5/site_perl/man/man1  PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/mummer"  EXAMPLESDIR="share/examples/mummer"  DATADIR="share/mummer"  WWWDIR="www/mummer"  ETCDIR="etc/mummer"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/mummer DOCSDIR=/usr/local/share/doc/mummer EXAMPLESDIR=/usr/local/share/examples/mummer  WWWDIR=/usr/local/www/mummer ETCDIR=/usr/local/etc/mummer
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=aarch64
OPSYS=FreeBSD
_OSRELEASE=11.2-RELEASE-p9
OSREL=11.2
OSVERSION=1102000
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  1048576
stack size              (kbytes, -s)  1048576
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License ART10 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   mummer-4.0.0.b2.2_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[112arm64-quarterly-job-09] Installing pkg-1.10.5_5...
[112arm64-quarterly-job-09] Extracting pkg-1.10.5_5: .......... done
===>   mummer-4.0.0.b2.2_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of mummer-4.0.0.b2.2_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License ART10 accepted by the user
===> Fetching all distfiles required by mummer-4.0.0.b2.2_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License ART10 accepted by the user
===> Fetching all distfiles required by mummer-4.0.0.b2.2_1 for building
=> SHA256 Checksum OK for mummer4-mummer-v4.0.0beta2-2-g277dac5_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License ART10 accepted by the user
===> Fetching all distfiles required by mummer-4.0.0.b2.2_1 for building
===>  Extracting for mummer-4.0.0.b2.2_1
=> SHA256 Checksum OK for mummer4-mummer-v4.0.0beta2-2-g277dac5_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for mummer-4.0.0.b2.2_1
===>  Applying FreeBSD patches for mummer-4.0.0.b2.2_1
===========================================================================
=======================<phase: build-depends  >============================
===>   mummer-4.0.0.b2.2_1 depends on executable: yaggo - not found
===>   Installing existing package /packages/All/yaggo-1.5.9.txz
[112arm64-quarterly-job-09] Installing yaggo-1.5.9...
[112arm64-quarterly-job-09] `-- Installing ruby-2.4.5_1,1...
[112arm64-quarterly-job-09] |   `-- Installing libedit-3.1.20181209_2,1...
[112arm64-quarterly-job-09] |   `-- Extracting libedit-3.1.20181209_2,1: .......... done
[112arm64-quarterly-job-09] |   `-- Installing libffi-3.2.1_3...
[112arm64-quarterly-job-09] |   | `-- Installing indexinfo-0.3.1...
[112arm64-quarterly-job-09] |   | `-- Extracting indexinfo-0.3.1: .... done
[112arm64-quarterly-job-09] |   `-- Extracting libffi-3.2.1_3: .......... done
[112arm64-quarterly-job-09] |   `-- Installing libyaml-0.2.1...
[112arm64-quarterly-job-09] |   `-- Extracting libyaml-0.2.1: ......... done
[112arm64-quarterly-job-09] `-- Extracting ruby-2.4.5_1,1: .......... done
[112arm64-quarterly-job-09] Extracting yaggo-1.5.9: ...... done
<snip>
===>   Returning to build of mummer-4.0.0.b2.2_1
===>   mummer-4.0.0.b2.2_1 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[112arm64-quarterly-job-09] Installing gmake-4.2.1_3...
[112arm64-quarterly-job-09] `-- Installing gettext-runtime-0.19.8.1_2...
[112arm64-quarterly-job-09] `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[112arm64-quarterly-job-09] Extracting gmake-4.2.1_3: .......... done
===>   mummer-4.0.0.b2.2_1 depends on executable: gmake - found
===>   Returning to build of mummer-4.0.0.b2.2_1
===>   mummer-4.0.0.b2.2_1 depends on package: perl5>=5.28.r1<5.29 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for mummer-4.0.0.b2.2_1
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:8: installing './compile'
configure.ac:2: installing './config.guess'
configure.ac:2: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
configure: loading site script /usr/ports/Templates/config.site
checking build system type... aarch64-portbld-freebsd11.2
checking host system type... aarch64-portbld-freebsd11.2
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking whether gmake supports nested variables... yes
checking whether gmake supports nested variables... (cached) yes
checking how to print strings... printf
checking whether gmake supports the include directive... yes (GNU style)
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking dependency style of cc... gcc3
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking how to convert aarch64-portbld-freebsd11.2 file names to aarch64-portbld-freebsd11.2 format... func_convert_file_noop
checking how to convert aarch64-portbld-freebsd11.2 file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from cc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... cpp
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... yes
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd11.2 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for ld used by c++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd11.2 ld.so
checking how to hardcode library paths into programs... immediate
checking for gcc... (cached) cc
checking whether we are using the GNU C compiler... (cached) yes
checking whether cc accepts -g... (cached) yes
checking for cc option to accept ISO C89... (cached) none needed
checking whether cc understands -c and -o together... (cached) yes
checking dependency style of cc... (cached) gcc3
checking for env... /usr/bin/env
checking for OpenMP flag of C++ compiler... unknown
checking for yaggo... /usr/local/bin/yaggo
checking for gnuplot... no
checking for gnuplot5... no
checking for gnuplot4... no
checking for __int128... yes
checking if std::thread::sleep_for is supported... yes
checking for perl... (cached) /usr/local/bin/perl
checking for Perl prefix... /usr/local
checking for Perl extension include path... /usr/local/lib/perl5/5.28/mach/CORE
checking for Perl extension target directory... /usr/local/lib/perl5/site_perl/mach/5.28
checking for Perl extensions C preprocessor flags... -DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include
checking for Perl extensions linker flags... -shared  -L/usr/local/lib/perl5/5.28/mach/CORE -lperl -L/usr/local/lib -fstack-protector-strong
configure: compiling with flags: CXXFLAGS=-std=c++0x -O2 -pipe -fno-strict-aliasing  
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mummer.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
===========================================================================
=======================<phase: build          >============================
===>  Building for mummer-4.0.0.b2.2_1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/mummer/work/mummer-4.0.0beta2-2-g277dac5'
/usr/local/bin/yaggo -o src/umd/nucmer_cmdline.hpp src/umd/nucmer_cmdline.yaggo
/usr/local/bin/yaggo -o tests/generate_sequences_cmdline.hpp tests/generate_sequences_cmdline.yaggo
/usr/local/bin/yaggo -o tests/ufasta_src/dsort_cmdline.hpp tests/ufasta_src/dsort_cmdline.yaggo
/usr/local/bin/yaggo -o tests/ufasta_src/sort_cmdline.hpp tests/ufasta_src/sort_cmdline.yaggo
/usr/local/bin/yaggo -o tests/check_cigar_cmdline.hpp tests/check_cigar_cmdline.yaggo
/usr/local/bin/yaggo -o tests/check_LCP_cmdline.hpp tests/check_LCP_cmdline.yaggo
gmake  all-am
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/mummer/work/mummer-4.0.0beta2-2-g277dac5'
depbase=`echo src/essaMEM/fasta.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe -fno-strict-aliasing   -MT src/essaMEM/fasta.o -MD -MP -MF $depbase.Tpo -c -o src/essaMEM/fasta.o src/essaMEM/fasta.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo src/essaMEM/mummer.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
c++ -DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe -fno-strict-aliasing   -MT src/essaMEM/mummer.o -MD -MP -MF $depbase.Tpo -c -o src/essaMEM/mummer.o src/essaMEM/mummer.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo src/essaMEM/sparseSA.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CXX   --mode=compile c++ -DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe -fno-strict-aliasing   -MT src/essaMEM/sparseSA.lo -MD -MP -MF $depbase.Tpo -c -o src/essaMEM/sparseSA.lo src/essaMEM/sparseSA.cpp &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  c++ -DHAVE_CONFIG_H -I. -Wall -I./include -std=c++11 -std=c++0x -O2 -pipe -fno-strict-aliasing -MT src/essaMEM/sparseSA.lo -MD -MP -MF src/essaMEM/.deps/sparseSA.Tpo -c src/essaMEM/sparseSA.cpp  -fPIC -DPIC -o src/essaMEM/.libs/sparseSA.o
depbase=`echo src/essaMEM/sssort_compact.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CXX   --mode=compile c++ -DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe -fno-strict-aliasing   -MT src/essaMEM/sssort_compact.lo -MD -MP -MF $depbase.Tpo -c -o src/essaMEM/sssort_compact.lo src/essaMEM/sssort_compact.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  c++ -DHAVE_CONFIG_H -I. -Wall -I./include -std=c++11 -std=c++0x -O2 -pipe -fno-strict-aliasing -MT src/essaMEM/sssort_compact.lo -MD -MP -MF src/essaMEM/.deps/sssort_compact.Tpo -c src/essaMEM/sssort_compact.cc  -fPIC -DPIC -o src/essaMEM/.libs/sssort_compact.o
depbase=`echo src/tigr/mgaps.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CXX   --mode=compile c++ -DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe -fno-strict-aliasing   -MT src/tigr/mgaps.lo -MD -MP -MF $depbase.Tpo -c -o src/tigr/mgaps.lo src/tigr/mgaps.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  c++ -DHAVE_CONFIG_H -I. -Wall -I./include -std=c++11 -std=c++0x -O2 -pipe -fno-strict-aliasing -MT src/tigr/mgaps.lo -MD -MP -MF src/tigr/.deps/mgaps.Tpo -c src/tigr/mgaps.cc  -fPIC -DPIC -o src/tigr/.libs/mgaps.o
depbase=`echo src/tigr/postnuc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CXX   --mode=compile c++ -DHAVE_CONFIG_H -I.  -Wall -I./include  -std=c++11  -std=c++0x -O2 -pipe -fno-strict-aliasing   -MT src/tigr/postnuc.lo -MD -MP -MF $depbase.Tpo -c -o src/tigr/postnuc.lo src/tigr/postnuc.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  c++ -DHAVE_CONFIG_H -I. -Wall -I./include -std=c++11 -std=c++0x -O2 -pipe -fno-strict-aliasing -MT src/tigr/postnuc.lo -MD -MP -MF src/tigr/.deps/postnuc.Tpo -c src/tigr/postnuc.cc  -fPIC -DPIC -o src/tigr/.libs/postnuc.o
src/tigr/postnuc.cc:174:37: error: non-constant-expression cannot be narrowed from type 'signed char' to 'char' in initializer list [-Wc++11-narrowing]
        Alignments.push_back({ *Mp, CurrCp->dirB } );
                                    ^~~~~~~~~~~~
src/tigr/postnuc.cc:174:37: note: insert an explicit cast to silence this issue
        Alignments.push_back({ *Mp, CurrCp->dirB } );
                                    ^~~~~~~~~~~~
                                    static_cast<char>( )
1 error generated.
gmake[2]: *** [Makefile:1903: src/tigr/postnuc.lo] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/mummer/work/mummer-4.0.0beta2-2-g277dac5'
gmake[1]: *** [Makefile:1110: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/mummer/work/mummer-4.0.0beta2-2-g277dac5'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/mummer



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