Date: Wed, 16 May 2018 15:13:43 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r470124 - in head/biology/fastx-toolkit: . files Message-ID: <201805161513.w4GFDhIr046613@repo.freebsd.org>
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Author: jwb Date: Wed May 16 15:13:43 2018 New Revision: 470124 URL: https://svnweb.freebsd.org/changeset/ports/470124 Log: biology/fastx-toolkit: Fix build on FreeBSD 12 Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D15451 Added: head/biology/fastx-toolkit/files/ head/biology/fastx-toolkit/files/patch-src_libfastx_fastx.h (contents, props changed) Modified: head/biology/fastx-toolkit/Makefile Modified: head/biology/fastx-toolkit/Makefile ============================================================================== --- head/biology/fastx-toolkit/Makefile Wed May 16 14:16:09 2018 (r470123) +++ head/biology/fastx-toolkit/Makefile Wed May 16 15:13:43 2018 (r470124) @@ -15,10 +15,8 @@ LIB_DEPENDS= libgtextutils.so:biology/libgtextutils USES= autoreconf libtool perl5 pkgconfig shebangfix USE_PERL5= run SHEBANG_FILES= scripts/*.pl - USE_GITHUB= yes GH_ACCOUNT= agordon - GNU_CONFIGURE= yes .include <bsd.port.mk> Added: head/biology/fastx-toolkit/files/patch-src_libfastx_fastx.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/fastx-toolkit/files/patch-src_libfastx_fastx.h Wed May 16 15:13:43 2018 (r470124) @@ -0,0 +1,19 @@ +--- src/libfastx/fastx.h.orig 2018-05-16 14:50:08 UTC ++++ src/libfastx/fastx.h +@@ -58,7 +58,7 @@ typedef enum { + OUTPUT_SAME_AS_INPUT=3 + } OUTPUT_FILE_TYPE; + +-#pragma pack(1) ++#pragma pack(push,1) + typedef struct + { + /* Record data - common for FASTA/FASTQ */ +@@ -115,6 +115,7 @@ typedef struct + FILE* input; + FILE* output; + } FASTX ; ++#pragma pack(pop) + + + void fastx_init_reader(FASTX *pFASTX, const char* filename,
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