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Date:      Sun, 18 Nov 2012 04:34:54 +0000 (UTC)
From:      TAKATSU Tomonari <tota@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r307527 - in head/math: . R-cran-MCMCpack
Message-ID:  <201211180434.qAI4YsgI051911@svn.freebsd.org>

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Author: tota
Date: Sun Nov 18 04:34:53 2012
New Revision: 307527
URL: http://svnweb.freebsd.org/changeset/ports/307527

Log:
  - Add a new port: math/R-cran-MCMCpack
  
    This package contains functions to perform Bayesian inference using
    posterior simulation for a number of statistical models. Most
    simulation is done in compiled C++ written in the Scythe Statistical
    Library Version 1.0.3. All models return coda mcmc objects that can
    then be summarized using the coda package. MCMCpack also contains
    some useful utility functions, including some additional density
    functions and pseudo-random number generators for statistical
    distributions, a general purpose Metropolis sampling algorithm, and
    tools for visualization.
  
    WWW: http://cran.r-project.org/web/packages/MCMCpack/
  
  Feature safe:	yes

Added:
  head/math/R-cran-MCMCpack/
  head/math/R-cran-MCMCpack/Makefile   (contents, props changed)
  head/math/R-cran-MCMCpack/distinfo   (contents, props changed)
  head/math/R-cran-MCMCpack/pkg-descr   (contents, props changed)
Modified:
  head/math/Makefile

Modified: head/math/Makefile
==============================================================================
--- head/math/Makefile	Sun Nov 18 04:26:33 2012	(r307526)
+++ head/math/Makefile	Sun Nov 18 04:34:53 2012	(r307527)
@@ -8,6 +8,7 @@
     SUBDIR += R
     SUBDIR += R-cran-Formula
     SUBDIR += R-cran-KFAS
+    SUBDIR += R-cran-MCMCpack
     SUBDIR += R-cran-RSvgDevice
     SUBDIR += R-cran-SuppDists
     SUBDIR += R-cran-Zelig

Added: head/math/R-cran-MCMCpack/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/math/R-cran-MCMCpack/Makefile	Sun Nov 18 04:34:53 2012	(r307527)
@@ -0,0 +1,21 @@
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME=	MCMCpack
+DISTVERSION=	1.2-4
+CATEGORIES=	math
+DISTNAME=	${PORTNAME}_${DISTVERSION}
+
+MAINTAINER=	tota@FreeBSD.org
+COMMENT=	Markov chain Monte Carlo Package
+
+LICENSE=	GPLv3
+
+RUN_DEPENDS=	R-cran-coda>0.11.3:${PORTSDIR}/math/R-cran-coda
+
+# Actually required 4.0 or later, but at least 4.2 in the FreeBSD ports tree
+USE_GCC=	4.2+
+USE_R_MOD=	yes
+R_MOD_AUTOPLIST=	yes
+
+.include <bsd.port.mk>

Added: head/math/R-cran-MCMCpack/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/math/R-cran-MCMCpack/distinfo	Sun Nov 18 04:34:53 2012	(r307527)
@@ -0,0 +1,2 @@
+SHA256 (MCMCpack_1.2-4.tar.gz) = 5c9aea9329371ab5e8488ad29aff67fbb6a4eca7e4ad25802aed168bcc0b84ba
+SIZE (MCMCpack_1.2-4.tar.gz) = 493078

Added: head/math/R-cran-MCMCpack/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/math/R-cran-MCMCpack/pkg-descr	Sun Nov 18 04:34:53 2012	(r307527)
@@ -0,0 +1,11 @@
+This package contains functions to perform Bayesian inference using
+posterior simulation for a number of statistical models. Most
+simulation is done in compiled C++ written in the Scythe Statistical
+Library Version 1.0.2. All models return coda mcmc objects that can
+then be summarized using the coda package. MCMCpack also contains
+some useful utility functions, including some additional density
+functions and pseudo-random number generators for statistical
+distributions, a general purpose Metropolis sampling algorithm, and
+tools for visualization.
+
+WWW: http://cran.r-project.org/web/packages/MCMCpack/



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