Date: Sat, 9 Jan 2010 05:23:18 GMT From: Ben Kaduk <kaduk@mit.edu> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/142513: [update port] science/vmd -- upgrade from 1.8.3 to 1.8.7 Message-ID: <201001090523.o095NIbG012335@www.freebsd.org> Resent-Message-ID: <201001090530.o095U2rJ087920@freefall.freebsd.org>
next in thread | raw e-mail | index | archive | help
>Number: 142513 >Category: ports >Synopsis: [update port] science/vmd -- upgrade from 1.8.3 to 1.8.7 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sat Jan 09 05:30:01 UTC 2010 >Closed-Date: >Last-Modified: >Originator: Ben Kaduk >Release: 8-current >Organization: MIT Student Information Processing Board >Environment: FreeBSD periphrasis.mit.edu 8.0-CURRENT FreeBSD 8.0-CURRENT #12: Fri Jun 26 23:33:14 EDT 2009 kaduk@periphrasis.mit.edu:/usr/obj/usr/src/sys/PERIPHRASIS amd64 >Description: Upgrade from VMD 1.8.3 to 1.8.7. I'm not entirely sure what new features this provides, since I was not able to install 1.8.3 (The tachyon 0.97 that the port wanted was no longer available on the upstream site). As such, I also can't tell if there are any regressions in the new packaging. I guess I will assert maintainership and take one for ports@ ... I changed the master site for the stride tarball to one hosted on the www.ks.uiuc.edu site that is upstream for vmd. A couple of tweaks to the Makefile to make portlint less unhappy, but there are still several spurious warnings issued. Upstream has updated from Tcl/Tk 8.4 to 8.5, so we'll follow that. I have only tested on an amd64 system, as I don't have a 32-bit install with graphics handy. In addition to the patch, I'll also attach a copy of the diagnostic errors that are printed on startup (some modules can't be found); as mentioned above, I don't know if this is a regression from the 1.8.3 port. >How-To-Repeat: >Fix: Patch attached with submission follows: diff -ru vmd-old/Makefile vmd/Makefile --- vmd-old/Makefile 2009-03-10 01:30:56.000000000 -0400 +++ vmd/Makefile 2010-01-08 23:54:43.000000000 -0500 @@ -6,23 +6,23 @@ # PORTNAME= vmd -PORTVERSION= 1.8.3 -PORTREVISION= 2 +PORTVERSION= 1.8.7 CATEGORIES= science graphics python tcl tk -MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.97/:tachyon \ - ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/:stride +MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.98.7/:tachyon \ + http://www.ks.uiuc.edu/Research/vmd/extsrcs/:stride DISTFILES= ${VMD_DIST} \ ${TACHYON_DIST}:tachyon \ ${STRIDE_DIST}:stride -MAINTAINER= ports@FreeBSD.org +MAINTAINER= kaduk-fbsd@mit.edu COMMENT= A molecular visualization program BUILD_DEPENDS= makedepend:${PORTSDIR}/devel/makedepend \ ${PYNUMERIC} -LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ - tk84:${PORTSDIR}/x11-toolkits/tk84 \ - fltk:${PORTSDIR}/x11-toolkits/fltk +LIB_DEPENDS= tcl85:${PORTSDIR}/lang/tcl85 \ + tk85:${PORTSDIR}/x11-toolkits/tk85 \ + fltk:${PORTSDIR}/x11-toolkits/fltk \ + netcdf:${PORTSDIR}/science/netcdf RUN_DEPENDS= ${PYNUMERIC} USE_PERL5_BUILD= yes @@ -30,11 +30,15 @@ USE_GL= glu USE_PYTHON= yes -RESTRICTED= "License has restrictions" +RESTRICTED= License has restrictions VMD_DIST= ${PORTNAME}-${PORTVERSION}.src.tar.gz -TACHYON_DIST= tachyon-0.97.tar.gz -STRIDE_DIST= stride.tar.gz +TACHYON_DIST= tachyon-0.98.7.tar.gz +# I get stride.tar.gz from ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/ +# but the www.ks.uiuc.edu site (that gives Stride_src.tar.Z) is closer +# to vmd upstream (and google actually knows about it). +#STRIDE_DIST= stride.tar.gz +STRIDE_DIST= Stride_src.tar.Z .include <bsd.port.pre.mk> @@ -51,14 +55,13 @@ # Check for VMD sources .if !exists(${DISTDIR}/${VMD_DIST}) # && !defined(PACKAGE_BUILDING) ECHO_MSG= ${PRINTF} -IGNORE= :\n\ -Because of licensing restrictions, you must fetch the source distribution\n\ -manually. Please access\n\ +IGNORE= because of licensing restrictions, you must fetch the source\n\ +distribution manually. Please access\n\ http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\n\ with a web browser. You will be required to log in and register,\n\ but you can create an account on this page. After registration and\n\ accepting the University of Illinois agreement, download the source file,\n\ -${VMD_DIST}. Please place this file in ${DISTDIR}.\n +${VMD_DIST}. Please place this file in ${DISTDIR}. .endif do-extract: @@ -70,17 +73,20 @@ post-patch: ${REINPLACE_CMD} "s/-lpthread/${PTHREAD_LIBS}/" ${WRKSRC}/configure - ${REINPLACE_CMD} "s/-ltk8.4/-ltk84/" ${WRKSRC}/configure - ${REINPLACE_CMD} "s/-ltcl8.4/-ltcl84/" ${WRKSRC}/configure + ${REINPLACE_CMD} "s/-ltk8.5/-ltk85/" ${WRKSRC}/configure + ${REINPLACE_CMD} "s/-ltcl8.5/-ltcl85/" ${WRKSRC}/configure ${REINPLACE_CMD} "s%\$$python_dir/lib_\$$config_arch%${PREFIX}%" ${WRKSRC}/configure ${REINPLACE_CMD} "s/python2.2/${PYTHON_VERSION}/" ${WRKSRC}/configure ${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/Makefile ${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/*/Makefile + ${REINPLACE_CMD} "s%log2f(\([^ ,]*\))%logf(\1)/(float)M_LN2%g" ${WRKSRC}/src/Orbital.C + ${REINPLACE_CMD} -e "s|%%PREFIX%%|${PREFIX}|g" \ + -e "s|/usr/local|${LOCALBASE}|g" ${WRKSRC}/configure do-build: ${SETENV} ${MAKE_ENV} ${GMAKE} bsd -C ${WRKSRC}/lib/tachyon/unix && ${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon ${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH} ${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${GMAKE} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins - ${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.4 TK_INCLUDE_DIR=${PREFIX}/include/tk8.4 ${GMAKE} ${VMD_TARGET} -C ${WRKSRC} + ${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.5 TK_INCLUDE_DIR=${PREFIX}/include/tk8.5 ${GMAKE} ${VMD_TARGET} -C ${WRKSRC} ${SETENV} ${MAKE_ENV} ${GMAKE} all -C ${WRKSRC}/src ${SETENV} ${MAKE_ENV} ${GMAKE} depend -C ${WRKSRC}/lib/surf && ${SETENV} ${MAKE_ENV} ${GMAKE} surf -C ${WRKSRC}/lib/surf && ${MV} ${WRKSRC}/lib/surf/surf ${WRKSRC}/lib/surf/surf_${VMD_ARCH} ${SETENV} ${MAKE_ENV} ${GMAKE} -C ${WRKSRC}/lib/stride && ${MV} ${WRKSRC}/lib/stride/stride ${WRKSRC}/lib/stride/stride_${VMD_ARCH} diff -ru vmd-old/distinfo vmd/distinfo --- vmd-old/distinfo 2005-05-06 11:19:35.000000000 -0400 +++ vmd/distinfo 2010-01-08 23:49:29.000000000 -0500 @@ -1,6 +1,9 @@ -MD5 (vmd-1.8.3.src.tar.gz) = 8fb3fa55a54bcc3e41dbbd53c1c2cc59 -SIZE (vmd-1.8.3.src.tar.gz) = 8590337 -MD5 (tachyon-0.97.tar.gz) = 198953aea283a7158eef2ee079e909f6 -SIZE (tachyon-0.97.tar.gz) = 2485223 -MD5 (stride.tar.gz) = bdef3a3e1af8cbdf8fbfefacfa9a929f -SIZE (stride.tar.gz) = 56441 +MD5 (vmd-1.8.7.src.tar.gz) = e8da2f2a5ffd5b4b2562eec77bbea8a3 +SHA256 (vmd-1.8.7.src.tar.gz) = 72fe2fb7eff4c805a886ea929c7e143a3a1be57cc817b5d1719d29e591d80316 +SIZE (vmd-1.8.7.src.tar.gz) = 23853864 +MD5 (tachyon-0.98.7.tar.gz) = 17b41c7042a2d3a75531a4979f643d15 +SHA256 (tachyon-0.98.7.tar.gz) = f22b86ed8c85bb12abc20c703f01238bce676c097dae66c81a6bbb7c08a60341 +SIZE (tachyon-0.98.7.tar.gz) = 3269840 +MD5 (Stride_src.tar.Z) = 96507c2bdc16d4b152278ad7a0cb0389 +SHA256 (Stride_src.tar.Z) = c40f7de64947ebab7ec49511c0d264b08bc0fcbc703014bdc85d83a7389be230 +SIZE (Stride_src.tar.Z) = 100329 Only in vmd/files: old-patch-configure diff -ru vmd-old/files/patch-AtomParser.C vmd/files/patch-AtomParser.C --- vmd-old/files/patch-AtomParser.C 2005-03-14 07:21:32.000000000 -0500 +++ vmd/files/patch-AtomParser.C 2010-01-07 18:50:58.000000000 -0500 @@ -1,11 +1,11 @@ --- src/AtomParser.C-xxx Fri Dec 5 13:21:53 2003 +++ src/AtomParser.C Thu Aug 12 00:24:00 2004 -@@ -109,7 +109,7 @@ +@@ -114,7 +114,7 @@ #define YYCONST #endif --#if !defined(_MSC_VER) && !defined(ARCH_MACOSX) -+#if !defined(_MSC_VER) && !defined(ARCH_MACOSX) && !defined(ARCH_FREEBSD) && !defined(ARCH_FREEBSDAMD64) +-#if !defined(_MSC_VER) && !defined(__APPLE__) ++#if !defined(_MSC_VER) && !defined(__APPLE__) && !defined(ARCH_FREEBSD) && !defined(ARCH_FREEBSDAMD64) #include <values.h> #endif diff -ru vmd-old/files/patch-Make-arch vmd/files/patch-Make-arch --- vmd-old/files/patch-Make-arch 2005-05-06 11:19:35.000000000 -0400 +++ vmd/files/patch-Make-arch 2010-01-08 14:48:33.000000000 -0500 @@ -1,22 +1,24 @@ --- Make-arch.orig Mon Feb 7 13:09:55 2005 +++ ../plugins/Make-arch Fri Mar 25 16:54:01 2005 -@@ -9,6 +9,7 @@ - @echo "--------------------------------------" - @echo " AIX4" +@@ -12,6 +12,7 @@ + @echo " AIX5_64" + @echo " AIX6_64" @echo " FREEBSD" + @echo " FREEBSDAMD64" @echo " HPUX11" @echo " IRIX6" @echo " IRIX6_64" -@@ -142,8 +143,22 @@ - "LOPTO = -o " \ +@@ -259,8 +260,25 @@ "CC = gcc" \ "CXX = g++" \ -- "CCFLAGS = -O2 -Wall -I/usr/local/include/tcl8.4" \ + "DEF = -D" \ +- "CCFLAGS = -O2 -Wall -I/usr/local/include/tcl8.5" \ - "CXXFLAGS = -O2 -Wall" \ -+ "CCFLAGS = ${CFLAGS} -O2 -Wall -I/usr/local/include/tcl8.4" \ -+ "CXXFLAGS = ${CFLAGS} -O2 -Wall" \ -+ "TCLLDFLAGS = -L/usr/local/lib -ltcl84" \ ++ "CCFLAGS = ${CFLAGS} -O2 -Wall -I/usr/local/include/tcl8.5" \ ++ "CXXFLAGS = ${CFLAGS} -O2 -Wall -I/usr/local/include/tcl8.5" \ ++ "TCLLDFLAGS = -L/usr/local/lib -ltcl85" \ ++ "NETCDFLDFLAGS = -lnetcdf " \ ++ "AR = ar" \ + "NM = nm -p" \ + "RANLIB = touch" \ + "SHLD = gcc -shared" @@ -28,8 +30,9 @@ + "LOPTO = -fPIC -m64 -o " \ + "CC = gcc" \ + "CXX = g++" \ -+ "CCFLAGS = ${CFLAGS} -m64 -O2 -Wall -I/usr/local/include/tcl8.4" \ -+ "CXXFLAGS = ${CFLAGS} -m64 -O2 -Wall" \ - "TCLLDFLAGS = -L/usr/local/lib -ltcl84" \ - "NM = nm -p" \ - "RANLIB = touch" \ ++ "DEF = -D" \ ++ "CCFLAGS = ${CFLAGS} -m64 -O2 -Wall -I/usr/local/include/tcl8.5" \ ++ "CXXFLAGS = ${CFLAGS} -m64 -O2 -Wall -I/usr/local/include/tcl8.5" \ + "TCLLDFLAGS = -L/usr/local/lib -ltcl85" \ + "NETCDFLDFLAGS = -lnetcdf " \ + "AR = ar" \ diff -ru vmd-old/files/patch-Makefile vmd/files/patch-Makefile --- vmd-old/files/patch-Makefile 2005-05-06 11:19:35.000000000 -0400 +++ vmd/files/patch-Makefile 2010-01-07 21:54:06.000000000 -0500 @@ -1,19 +1,18 @@ --- Makefile.orig Sat Dec 6 04:20:58 2003 +++ Makefile Wed Feb 2 21:30:13 2005 -@@ -52,11 +52,14 @@ - +@@ -86,10 +86,13 @@ ## FreeBSD builds + ## freebsd.mesa: -- ./configure FREEBSD MESA FLTK TK TCL IMD VRPN PYTHON PTHREADS LIBTACHYON NUMPY SILENT -+ ./configure FREEBSD MESA FLTK TK TCL IMD PYTHON PTHREADS LIBTACHYON NUMPY +- ./configure FREEBSD MESA FLTK TK TCL IMD VRPN PTHREADS LIBTACHYON NETCDF SILENT ++ ./configure FREEBSD MESA FLTK TK TCL IMD PTHREADS LIBTACHYON NETCDF - # FreeBSD doesn't have hardware good accelleration support freebsd.opengl: -- ./configure FREEBSD OPENGL FLTK TK IMD VRPN SILENT SPACEBALL TCL PTHREADS ACTC LIBTACHYON PYTHON NUMPY -+ ./configure FREEBSD OPENGL FLTK TK IMD TCL PTHREADS LIBTACHYON PYTHON NUMPY +- ./configure FREEBSD OPENGL FLTK TK IMD VRPN SILENT LIBSBALL TCL PTHREADS ACTC LIBTACHYON NETCDF ++ ./configure FREEBSD OPENGL FLTK TK IMD TCL PTHREADS LIBTACHYON NETCDF + +freebsd.amd64.opengl: -+ ./configure FREEBSDAMD64 OPENGL FLTK TK IMD SILENT TCL PTHREADS LIBTACHYON PYTHON NUMPY ++ ./configure FREEBSDAMD64 OPENGL FLTK TK IMD TCL PTHREADS LIBTACHYON NETCDF diff -ru vmd-old/files/patch-OpenGLExtensions.C vmd/files/patch-OpenGLExtensions.C --- vmd-old/files/patch-OpenGLExtensions.C 2004-09-03 05:02:31.000000000 -0400 +++ vmd/files/patch-OpenGLExtensions.C 2010-01-07 22:01:22.000000000 -0500 @@ -1,10 +1,10 @@ --- src/OpenGLExtensions.C-xxx Fri Dec 5 13:21:59 2003 +++ src/OpenGLExtensions.C Fri Aug 27 16:42:14 2004 -@@ -117,7 +117,17 @@ +@@ -157,7 +157,17 @@ #endif #if !defined(_MSC_VER) && !defined(__APPLE__) --#if !defined(ARCH_LINUX) && !defined(ARCH_LINUXALPHA) && !defined(ARCH_LINUXAMD64) && !defined(ARCH_LINUXPPC) && (defined(GLX_VERSION_1_4) || defined(ARCH_SOLARIS2)) +-#if !defined(__linux) && !defined(ARCH_SOLARISX86) && !defined(ARCH_SOLARISX86_64) && (defined(GLX_VERSION_1_4) || defined(ARCH_SOLARIS2)) +/* + Why the !defined(ARCH_FREEBSD)? Typically the X libraries that + come with FreeBSD work with glXGetProcAddress. However, if the @@ -15,7 +15,7 @@ + that bridge when we come to it - email me at stephen@math.missouri.edu + about it.) +*/ -+#if !defined(ARCH_FREEBSD) && !defined(ARCH_LINUX) && !defined(ARCH_LINUXALPHA) && !defined(ARCH_LINUXAMD64) && !defined(ARCH_LINUXPPC) && (defined(GLX_VERSION_1_4) || defined(ARCH_SOLARIS2)) ++#if !defined(ARCH_FREEBSD) && !defined(__linux) && !defined(ARCH_SOLARISX86) && !defined(ARCH_SOLARISX86_64) && (defined(GLX_VERSION_1_4) || defined(ARCH_SOLARIS2)) // GLX 1.4 form found on commercial Unix systems that // don't bother providing the ARB extension version that Linux prefers. return glXGetProcAddress((const GLubyte *) procname); diff -ru vmd-old/files/patch-configure vmd/files/patch-configure --- vmd-old/files/patch-configure 2005-05-06 11:19:35.000000000 -0400 +++ vmd/files/patch-configure 2010-01-08 22:01:57.000000000 -0500 @@ -1,39 +1,54 @@ ---- configure.orig Sat Dec 6 04:20:58 2003 -+++ configure Wed Feb 2 21:16:23 2005 -@@ -46,6 +46,7 @@ - # --------------------------------------------------------------- - # AIX4 - compile on an RS/6000 machine (gcc/g++/xlc/xlC) - # FREEBSD - compile on a FreeBSD machine (gcc/g++) -+# FREEBSDAMD64- compile on a FreeBSD machine (gcc/g++) - # HPUX11 - compile on an HP-UX 11.0 machine (cc/CC/cc/aCC) - # IRIX6 - compile on an SGI, IRIX 6.X or later, 32-bit ABI - # IRIX6_64 - compile on an SGI, IRIX 6.X or later, 64-bit ABI -@@ -116,7 +117,7 @@ +--- configure.orig 2009-08-01 03:19:34.000000000 -0400 ++++ configure 2010-01-08 22:01:38.000000000 -0500 +@@ -13,10 +13,10 @@ + $install_name = "vmd"; + + # Directory where VMD startup script is installed, should be in users' paths. +-$install_bin_dir="/usr/local/bin"; ++$install_bin_dir="%%PREFIX%%/bin"; + + # Directory where VMD files and executables are installed +-$install_library_dir="/usr/local/lib/$install_name"; ++$install_library_dir="%%PREFIX%%/lib/$install_name"; + + + # optionally override hard-coded defaults above with environment variables +@@ -48,6 +48,7 @@ + # AIX5 - compile on an RS/6000 machine (gcc/g++/xlc/xlC) + # AIX6 - compile on an RS/6000 machine (gcc/g++/xlc/xlC) + # FREEBSD - compile on a FreeBSD machine (gcc/g++) ++# FREEBSDAMD64 - compile on a FreeBSD machine (gcc/g++) + # HPUX11 - compile on an HP-UX 11.0 machine (cc/CC/cc/aCC) + # IRIX6 - compile on an SGI, IRIX 6.X or later, 32-bit ABI + # IRIX6_64 - compile on an SGI, IRIX 6.X or later, 64-bit ABI +@@ -153,7 +154,7 @@ #################### Parse command line options ########### # list of allowed architectures --@archlist=('IRIX6', 'IRIX6_64', 'FREEBSD', 'HPUX11', 'AIX4', 'LINUX', 'LINUXALPHA', 'LINUXAMD64', 'LINUXPPC', 'MACOSX', 'TRU64', 'SOLARIS2', 'SOLARIS2_64', 'SOLARISX86', 'WIN32'); -+@archlist=('IRIX6', 'IRIX6_64', 'FREEBSD', 'FREEBSDAMD64', 'HPUX11', 'AIX4', 'LINUX', 'LINUXALPHA', 'LINUXAMD64', 'LINUXPPC', 'MACOSX', 'TRU64', 'SOLARIS2', 'SOLARIS2_64', 'SOLARISX86', 'WIN32'); +-@archlist=('IRIX6', 'IRIX6_64', 'FREEBSD', 'HPUX11', 'AIX4', 'AIX5', 'AIX5_64', 'AIX6_64', 'LINUX', 'LINUXALPHA', 'LINUXAMD64', 'LINUXIA64', 'LINUXPPC', 'LINUXPPC64', 'MACOSX', 'MACOSXX86', 'MACOSXX86_64', 'TRU64', 'SOLARIS2', 'SOLARIS2_64', 'SOLARISX86', 'SOLARISX86_64', 'WIN32', 'WIN64'); ++@archlist=('IRIX6', 'IRIX6_64', 'FREEBSD', 'FREEBSDAMD64', 'HPUX11', 'AIX4', 'AIX5', 'AIX5_64', 'AIX6_64', 'LINUX', 'LINUXALPHA', 'LINUXAMD64', 'LINUXIA64', 'LINUXPPC', 'LINUXPPC64', 'MACOSX', 'MACOSXX86', 'MACOSXX86_64', 'TRU64', 'SOLARIS2', 'SOLARIS2_64', 'SOLARISX86', 'SOLARISX86_64', 'WIN32', 'WIN64'); if ($#ARGV == -1) { $text = `cat configure.options`; -@@ -624,8 +625,8 @@ +@@ -747,8 +748,8 @@ # This may be commented out if not required. - $libtachyon_defines = "-DVMDLIBTACHYON"; + $libtachyon_defines = "-DVMDLIBTACHYON"; $libtachyon_dir = "$vmd_library_dir/tachyon"; -$libtachyon_include = "-I$libtachyon_dir/include"; -$libtachyon_library = "-L$libtachyon_dir/lib_$config_arch"; +$libtachyon_include = "-I$libtachyon_dir/src"; +$libtachyon_library = "-L$libtachyon_dir/compile/bsd"; $libtachyon_libs = "-ltachyon"; - @libtachyon_cc = (); - @libtachyon_ccpp = ('LibTachyonDisplayDevice.C' -@@ -1174,8 +1175,10 @@ + @libtachyon_cc = (); + @libtachyon_cu = (); +@@ -1478,9 +1479,11 @@ + $def_imageviewer="display %s"; # XFree 4.0 Direct Rendering Interface and GLX - $opengl_dir = "/usr/X11R6"; +- $opengl_dir = "/usr/X11R6"; - $opengl_include = "-I$opengl_dir/include"; - $opengl_library = "-L$opengl_dir/lib"; ++ $opengl_dir = "/usr/local"; +# -DGLX_GLXEXT_LEGACY is required for patched OpenGLExtensions.C to compile. +# See patched OpenGLExtensions.C for explanation. + $opengl_include = "-DGLX_GLXEXT_LEGACY -I$opengl_dir/include"; @@ -41,7 +56,28 @@ $opengl_libs = "-lGL -lGLU"; $arch_lex = "flex"; -@@ -1209,7 +1212,66 @@ +@@ -1492,17 +1495,17 @@ + $arch_shld = "g++ -shared"; + $arch_shlibname = "so"; + $arch_shcppopts = "-fPIC"; +- $arch_shldopts = "-L/usr/local/lib -L/usr/X11R6/lib"; ++ $arch_shldopts = "-L/usr/local/lib"; + + $arch_opt_flag = "-m32 -fno-for-scope -Wno-deprecated -Wall -O3"; + $arch_copts = "-m32 -Wall -O3"; + + if ($config_static) { + $arch_lopts = "-static"; +- $mesa_libs = "-lMesaGL -lMesaGLU -L/usr/X11R6/lib -lXext -lX11"; ++ $mesa_libs = "-lMesaGL -lMesaGLU -L/usr/local/lib -lXext -lX11"; + } else { + $arch_lopts = ""; +- $mesa_libs = "-lGL -lGLU -L/usr/X11R6/lib -lXext -lX11"; ++ $mesa_libs = "-lGL -lGLU -L/usr/local/lib -lXext -lX11"; + } + + if ($config_shared) { +@@ -1515,7 +1518,66 @@ # this is to make tcl happy, # also needed for plugins @@ -67,7 +103,7 @@ + } + + # XFree 4.0 Direct Rendering Interface and GLX -+ $opengl_dir = "/usr/X11R6"; ++ $opengl_dir = "/usr/local"; +# -DGLX_GLXEXT_LEGACY is required for patched OpenGLExtensions.C to compile. +# See patched OpenGLExtensions.C for explanation. + $opengl_include = "-DGLX_GLXEXT_LEGACY -I$opengl_dir/include"; @@ -83,17 +119,17 @@ + $arch_shld = "ld -shared"; + $arch_shlibname = "so"; + $arch_shcppopts = "-fPIC"; -+ $arch_shldopts = "-L/usr/local/lib -L/usr/X11R6/lib"; ++ $arch_shldopts = "-L/usr/local/lib -L/usr/local/lib"; + -+ $arch_opt_flag = "-m64 -Wall -O6 -ffast-math"; -+ $arch_copts = "-m64 -Wall -O6 -ffast-math"; ++ $arch_opt_flag = "-m64 -Wall -O3 -ffast-math"; ++ $arch_copts = "-m64 -Wall -O3 -ffast-math"; + + if ($config_static) { + $arch_lopts = "-static"; -+ $mesa_libs = "-lMesaGL -lMesaGLU -L/usr/X11R6/lib -lXext -lX11"; ++ $mesa_libs = "-lMesaGL -lMesaGLU -L/usr/local/lib -lXext -lX11"; + } else { + $arch_lopts = ""; -+ $mesa_libs = "-lGL -lGLU -L/usr/X11R6/lib -lXext -lX11"; ++ $mesa_libs = "-lGL -lGLU -L/usr/local/lib -lXext -lX11"; + } + + if ($config_shared) { @@ -109,17 +145,16 @@ if ($config_python) { # this is to make python happy -@@ -2052,11 +2114,11 @@ +@@ -2715,10 +2777,10 @@ # compiler and compiler directives CC = $arch_cc --CFLAGS = $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) - COMPILERC = $arch_compilerc - RCFLAGS = $arch_rcflags +-CFLAGS = $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) $rpm_optflags ++CFLAGS += $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) + CCPP = $arch_ccpp --CPPFLAGS = $arch_opt_flag $arch_cppopts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) +-CPPFLAGS = $arch_opt_flag $arch_cppopts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) $rpm_optflags +CPPFLAGS = \${CXXFLAGS} $arch_opt_flag $arch_cppopts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) -+CFLAGS += $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) - DEPEND = $arch_depend_flag - DEPENDFILE = Makedata.depend + NVCC = $arch_nvcc + NVCCFLAGS = $arch_nvccflags -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) diff -ru vmd-old/files/patch-lib_tachyon_unix_Make-arch vmd/files/patch-lib_tachyon_unix_Make-arch --- vmd-old/files/patch-lib_tachyon_unix_Make-arch 2005-05-06 11:19:35.000000000 -0400 +++ vmd/files/patch-lib_tachyon_unix_Make-arch 2010-01-08 13:12:00.000000000 -0500 @@ -1,11 +1,11 @@ --- Make-arch-orig Fri Mar 25 14:34:38 2005 +++ lib/tachyon/unix/Make-arch Fri Mar 25 14:34:50 2005 -@@ -859,7 +859,7 @@ +@@ -950,7 +950,7 @@ $(MAKE) all \ "ARCH = bsd" \ "CC = gcc" \ -- "CFLAGS = -O6 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ -+ "CFLAGS += -O6 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ +- "CFLAGS = -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ ++ "CFLAGS += -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ "AR = ar" \ "ARFLAGS = r" \ "STRIP = strip" \ diff -ru vmd-old/files/patch-stride.h vmd/files/patch-stride.h --- vmd-old/files/patch-stride.h 2005-01-30 17:42:12.000000000 -0500 +++ vmd/files/patch-stride.h 2010-01-08 13:18:40.000000000 -0500 @@ -3,7 +3,7 @@ @@ -40,7 +40,7 @@ #define MAX_BOND 100 #define MAX_ASSIGN 300 - #define MAX_INFO 1000 + #define MAX_INFO 100 -#define MAX_AT_IN_RES 50 +#define MAX_AT_IN_RES 75 #define MAX_AT_IN_HETERORES 200 diff -ru vmd-old/files/patch-utilities.C vmd/files/patch-utilities.C --- vmd-old/files/patch-utilities.C 2005-03-14 07:21:32.000000000 -0500 +++ vmd/files/patch-utilities.C 2010-01-08 13:24:30.000000000 -0500 @@ -1,11 +1,11 @@ --- src/utilities.C.orig Sat Jan 22 16:15:24 2005 +++ src/utilities.C Sat Jan 22 16:15:45 2005 -@@ -275,7 +275,7 @@ +@@ -396,7 +396,7 @@ return stringdup("Windows User"); } #else --#if defined(ARCH_FREEBSD) || defined(ARCH_MACOSX) || defined(ARCH_LINUX) || defined(ARCH_LINUXALPHA) || defined(ARCH_LINUXAMD64) || defined(ARCH_LINUXPPC) -+#if defined(ARCH_FREEBSD) || defined(ARCH_FREEBSDAMD64) || defined(ARCH_MACOSX) || defined(ARCH_LINUX) || defined(ARCH_LINUXALPHA) || defined(ARCH_LINUXAMD64) || defined(ARCH_LINUXPPC) +-#if defined(ARCH_FREEBSD) || defined(__APPLE__) || defined(__linux) ++#if defined(ARCH_FREEBSD) || defined(ARCH_FREEBSDAMD64) || defined(__APPLE__) || defined(__linux) return stringdup(getlogin()); #else return stringdup(cuserid(NULL)); Only in vmd-old/files: patch-vmd Only in vmd/files: patch-vmd.csh Only in vmd/files: sub-patch-configure.in diff -ru vmd-old/pkg-plist vmd/pkg-plist --- vmd-old/pkg-plist 2005-05-06 11:19:35.000000000 -0400 +++ vmd/pkg-plist 2010-01-08 20:30:16.000000000 -0500 @@ -1,14 +1,16 @@ bin/vmd +lib/vmd/.vmdrc +lib/vmd/.vmdsensors lib/vmd/Announcement lib/vmd/LICENSE lib/vmd/README -lib/vmd/.vmdrc -lib/vmd/.vmdsensors lib/vmd/doc/ug.pdf -lib/vmd/plugins/%%VMD_ARCH%%/bin/catdcd4.0/catdcd lib/vmd/plugins/%%VMD_ARCH%%/molfile/avsplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/babelplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/basissetplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/bgfplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/binposplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/biomoccaplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/brixplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/carplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/ccp4plugin.so @@ -19,6 +21,7 @@ lib/vmd/plugins/%%VMD_ARCH%%/molfile/dcdplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/dlpolyplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/dsn6plugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/dtrplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/dxplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/edmplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/fs4plugin.so @@ -27,16 +30,20 @@ lib/vmd/plugins/%%VMD_ARCH%%/molfile/grdplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/gridplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/gromacsplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/jsplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/lammpsplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/libmolfile_plugin.a lib/vmd/plugins/%%VMD_ARCH%%/molfile/libmolfile_plugin.h +lib/vmd/plugins/%%VMD_ARCH%%/molfile/maeffplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/mapplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/mdfplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/mol2plugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/moldenplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/msmsplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/namdbinplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/parm7plugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/parmplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/pbeqplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/pdbplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/phiplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/pltplugin.so @@ -44,43 +51,146 @@ lib/vmd/plugins/%%VMD_ARCH%%/molfile/psfplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/raster3dplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/rst7plugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/situsplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/spiderplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/stlplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/tinkerplugin.so -lib/vmd/plugins/%%VMD_ARCH%%/molfile/webpdbplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/uhbdplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspchgcarplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspoutcarplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspparchgplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspposcarplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspxdatcarplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/vaspxmlplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/vtfplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/xbgfplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/xsfplugin.so lib/vmd/plugins/%%VMD_ARCH%%/molfile/xyzplugin.so -lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/libpmepot.so -lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pkgIndex.tcl -lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pmepot.tcl -lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pmepot_gui.tcl -lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.3/libpsfgen.so -lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.3/pkgIndex.tcl -lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.3/ug.pdf +lib/vmd/plugins/%%VMD_ARCH%%/tcl/hesstrans1.0/hessTest.tcl +lib/vmd/plugins/%%VMD_ARCH%%/tcl/hesstrans1.0/hesstrans.so +lib/vmd/plugins/%%VMD_ARCH%%/tcl/hesstrans1.0/hesstrans.tcl +lib/vmd/plugins/%%VMD_ARCH%%/tcl/hesstrans1.0/pkgIndex.tcl +lib/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so +lib/vmd/plugins/LINUX/tcl/intersurf1.1/color_func.tcl +lib/vmd/plugins/LINUX/tcl/intersurf1.1/intersurf_gui.tcl +lib/vmd/plugins/LINUX/tcl/intersurf1.1/license.txt +lib/vmd/plugins/LINUX/tcl/intersurf1.1/nicostuf.tcl +lib/vmd/plugins/LINUX/tcl/intersurf1.1/pkgIndex.tcl +lib/vmd/plugins/WIN32/tcl/intersurf1.1/bin/intersurf.dll +lib/vmd/plugins/WIN32/tcl/intersurf1.1/color_func.tcl +lib/vmd/plugins/WIN32/tcl/intersurf1.1/intersurf_gui.tcl +lib/vmd/plugins/WIN32/tcl/intersurf1.1/license.txt +lib/vmd/plugins/WIN32/tcl/intersurf1.1/nicostuf.tcl +lib/vmd/plugins/WIN32/tcl/intersurf1.1/pkgIndex.tcl lib/vmd/plugins/include/molfile_plugin.h +lib/vmd/plugins/include/vmdconio.h lib/vmd/plugins/include/vmdplugin.h -lib/vmd/plugins/noarch/tcl/apbsrun1.0/apbsrun.tcl -lib/vmd/plugins/noarch/tcl/apbsrun1.0/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/apbsrun1.0/radii.dat -lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd-api.tcl -lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd-gui.tcl -lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd-settings.tcl -lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd-template.namd -lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd.tcl -lib/vmd/plugins/noarch/tcl/autoimd1.4/namdrun.tcl -lib/vmd/plugins/noarch/tcl/autoimd1.4/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/autoimd1.4/ug.pdf -lib/vmd/plugins/noarch/tcl/autoionize1.1/autoionize.tcl -lib/vmd/plugins/noarch/tcl/autoionize1.1/ions.top -lib/vmd/plugins/noarch/tcl/autoionize1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/apbsrun1.3/apbsrun.tcl +lib/vmd/plugins/noarch/tcl/apbsrun1.3/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/apbsrun1.3/radii.dat +lib/vmd/plugins/noarch/tcl/atomedit1.0/atomedit.tcl +lib/vmd/plugins/noarch/tcl/atomedit1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.6/autoimd-api.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.6/autoimd-gui.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.6/autoimd-settings.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.6/autoimd-template.namd +lib/vmd/plugins/noarch/tcl/autoimd1.6/autoimd.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.6/namdrun.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.6/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.6/ug.pdf +lib/vmd/plugins/noarch/tcl/autoionize1.2/autoionize.tcl +lib/vmd/plugins/noarch/tcl/autoionize1.2/autoionizegui.tcl +lib/vmd/plugins/noarch/tcl/autoionize1.2/ions.top +lib/vmd/plugins/noarch/tcl/autoionize1.2/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/bignum1.0/bignum.tcl +lib/vmd/plugins/noarch/tcl/bignum1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/biocore1.1/biocore.tcl +lib/vmd/plugins/noarch/tcl/biocore1.1/biocoreHelper.tcl +lib/vmd/plugins/noarch/tcl/biocore1.1/biocorechat.tcl +lib/vmd/plugins/noarch/tcl/biocore1.1/biocorelogin.tcl +lib/vmd/plugins/noarch/tcl/biocore1.1/biocorepubsync.tcl +lib/vmd/plugins/noarch/tcl/biocore1.1/biocoreutil.tcl +lib/vmd/plugins/noarch/tcl/biocore1.1/locked.gif +lib/vmd/plugins/noarch/tcl/biocore1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/biocore1.1/unlocked.gif +lib/vmd/plugins/noarch/tcl/blast1.1/blast.tcl +lib/vmd/plugins/noarch/tcl/blast1.1/blast_resultviewer.tcl +lib/vmd/plugins/noarch/tcl/blast1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/cgtools1.0/cggui.tcl +lib/vmd/plugins/noarch/tcl/cgtools1.0/cgnetworking.tcl +lib/vmd/plugins/noarch/tcl/cgtools1.0/cgtools.tcl +lib/vmd/plugins/noarch/tcl/cgtools1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/cgtools1.0/protein.cgc +lib/vmd/plugins/noarch/tcl/cgtools1.0/rbcg-2007.par +lib/vmd/plugins/noarch/tcl/cgtools1.0/rbcg-2007.top +lib/vmd/plugins/noarch/tcl/cgtools1.0/water.cgc lib/vmd/plugins/noarch/tcl/cliptool1.0/cliptool.tcl lib/vmd/plugins/noarch/tcl/cliptool1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/clonerep1.1/clonerep.tcl +lib/vmd/plugins/noarch/tcl/clonerep1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/colorscalebar1.2/colorscalebar.tcl +lib/vmd/plugins/noarch/tcl/colorscalebar1.2/pkgIndex.tcl lib/vmd/plugins/noarch/tcl/contactmap1.1/contactmap.tcl lib/vmd/plugins/noarch/tcl/contactmap1.1/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/exectool1.0/exectool.tcl -lib/vmd/plugins/noarch/tcl/exectool1.0/jobmanager.tcl -lib/vmd/plugins/noarch/tcl/exectool1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/dataimport1.0/dataimport.tcl +lib/vmd/plugins/noarch/tcl/dataimport1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/demomaster1.0/demomaster.tcl +lib/vmd/plugins/noarch/tcl/demomaster1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/dipwatch1.2/dipwatch.tcl +lib/vmd/plugins/noarch/tcl/dipwatch1.2/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/dowser1.0/dowser.tcl +lib/vmd/plugins/noarch/tcl/dowser1.0/dowser_gui.tcl +lib/vmd/plugins/noarch/tcl/dowser1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/exectool1.2/exectool.tcl +lib/vmd/plugins/noarch/tcl/exectool1.2/jobmanager.tcl +lib/vmd/plugins/noarch/tcl/exectool1.2/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/extendedpdb1.0/extendedpdb.tcl +lib/vmd/plugins/noarch/tcl/extendedpdb1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/gofrgui1.1/gofrgui.tcl +lib/vmd/plugins/noarch/tcl/gofrgui1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/hbonds1.1/hbonds.tcl +lib/vmd/plugins/noarch/tcl/hbonds1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/idatm0.1/idatm.tcl +lib/vmd/plugins/noarch/tcl/idatm0.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/ilstools1.2/acetylene.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/carbondioxide.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/carbonmonoxide.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/ethene.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/hydrogen.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/ilstools.tcl +lib/vmd/plugins/noarch/tcl/ilstools1.2/methane.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/nitricoxide.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/nitrogen.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/nitrogendioxide.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/nitrousoxide.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/oxygen.xyz +lib/vmd/plugins/noarch/tcl/ilstools1.2/pkgIndex.tcl lib/vmd/plugins/noarch/tcl/imdmenu1.0/imdmenu.tcl lib/vmd/plugins/noarch/tcl/imdmenu1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/inorganicbuilder.tcl +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/CVS/Entries +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/CVS/Repository +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/CVS/Root +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/asio2.inp +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/asio2.pdb +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/asio2.top +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/au.pdb +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/au.top +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/graphite.pdb +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/graphite.top +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/quartz_alpha.pdb +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/quartz_alpha.top +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/si.pdb +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/si.top +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/si3n4.inp +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/si3n4.pdb +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/si3n4.top +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/sio2.inp +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/sio2.pdb +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/sio2.top +lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/irspecgui1.1/irspecgui.tcl +lib/vmd/plugins/noarch/tcl/irspecgui1.1/pkgIndex.tcl lib/vmd/plugins/noarch/tcl/membrane1.0/membrane.tcl lib/vmd/plugins/noarch/tcl/membrane1.0/pkgIndex.tcl lib/vmd/plugins/noarch/tcl/membrane1.0/popc_box.pdb @@ -88,59 +198,404 @@ lib/vmd/plugins/noarch/tcl/membrane1.0/pope_box.pdb lib/vmd/plugins/noarch/tcl/membrane1.0/pope_box.psf lib/vmd/plugins/noarch/tcl/membrane1.0/top_all27_prot_lipid.inp +lib/vmd/plugins/noarch/tcl/mergestructs1.0/mergestructs.tcl +lib/vmd/plugins/noarch/tcl/mergestructs1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/ATOMTYPE_OPLS.DEF +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/CVS/Entries +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/CVS/Repository +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/CVS/Root +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/ALA.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/ARG.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/ASN.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/ASP.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/CVS/Entries +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/CVS/Repository +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/CVS/Root +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/CYS.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/GLN.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/GLU.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/GLY-end.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/GLY.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/HIS.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/HSE.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/ILE.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/LEU.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/LYS.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/MET.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/PHE.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/PRO.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/SER.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/THR.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/TRP.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/TYR.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/VAL.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/CVS/Entries +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/CVS/Repository +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/CVS/Root +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/acetone.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/ammonia.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/basefrag.mdb +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/benzene.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/benzene.pdb +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/butane.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/cyclobutane.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/cyclohexane.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/cyclopentane.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/cyclopropane.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/furan.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/isoprene.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/methane.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/naphthalene.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/thf.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/thiophene.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/water.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/convert_xbgf_to_frags.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/CVS/Entries +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/CVS/Repository +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/CVS/Root +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/amino.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/butyl.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/carboxyl.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/chloride.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/formyl.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/frag.mdb +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/furan_1C.frag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/furan_2C.frag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/hydroxyl.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/methyl.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/methyl.pdb +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/phenyl.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/tbutyl.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/thiol.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/thiophene_1C.frag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/thiophene_2C.frag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/vinyl.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/A.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/C.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/CVS/Entries +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/CVS/Repository +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/CVS/Root +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/G.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/T.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/U.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/dna_backbone.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/dna_dihedrals.gif +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/rna_backbone.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/rna_backbone_added.mfrag +lib/vmd/plugins/noarch/tcl/molefacture1.1/molefacture.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/molefacture_builder.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/molefacture_edit.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/molefacture_geometry.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/molefacture_gui.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/molefacture_internals.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/molefacture_state.tcl +lib/vmd/plugins/noarch/tcl/molefacture1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/moltoptools0.1/moltoptools.tcl +lib/vmd/plugins/noarch/tcl/moltoptools0.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/multimolanim1.0/multimolanim.tcl +lib/vmd/plugins/noarch/tcl/multimolanim1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/multiplot1.4/multiplot.tcl +lib/vmd/plugins/noarch/tcl/multiplot1.4/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/colormap_vmd.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/export_options.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/find.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/get_input.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/import_options.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/multiseq.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/phylotree_options.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/plot.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/select_contactshell.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/select_nrset.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/select_residues.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/stamp_options.tcl +lib/vmd/plugins/noarch/tcl/multiseq2.1/versions.txt +lib/vmd/plugins/noarch/tcl/multiseq2.1/versions_WIN32.txt +lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/download_updates.tcl +lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/multiseqdialog.tcl +lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/scrolledframe.tcl +lib/vmd/plugins/noarch/tcl/multiseqdialog1.1/wait_dialog.tcl +lib/vmd/plugins/noarch/tcl/multitext1.0/multitext.tcl +lib/vmd/plugins/noarch/tcl/multitext1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/namdenergy1.2/namdenergy.tcl +lib/vmd/plugins/noarch/tcl/namdenergy1.2/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/namdgui1.2/namdgui.tcl +lib/vmd/plugins/noarch/tcl/namdgui1.2/namdgui_tclforces.tcl +lib/vmd/plugins/noarch/tcl/namdgui1.2/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/namdplot1.0/namdplot.tcl +lib/vmd/plugins/noarch/tcl/namdplot1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/namdserver1.1/namdserver.tcl +lib/vmd/plugins/noarch/tcl/namdserver1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/nanotube1.0/nanotube.tcl +lib/vmd/plugins/noarch/tcl/nanotube1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/navfly1.0/navfly.tcl +lib/vmd/plugins/noarch/tcl/navfly1.0/pkgIndex.tcl lib/vmd/plugins/noarch/tcl/navigate1.0/navigate.tcl lib/vmd/plugins/noarch/tcl/navigate1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/optimization1.0/optimization.tcl +lib/vmd/plugins/noarch/tcl/optimization1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/palettetool1.0/palettetool.tcl +lib/vmd/plugins/noarch/tcl/palettetool1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_atomedit.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_aux.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_charmmcharges.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_components.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_energies.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_hessian.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_intcoor.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_lists.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_parameters.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_potscan.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_readwrite.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_refinement.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_respcharges.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_tmcomplex.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/paratool_topology.tcl +lib/vmd/plugins/noarch/tcl/paratool1.4/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/pbctools2.5/pbcbox.tcl +lib/vmd/plugins/noarch/tcl/pbctools2.5/pbcgui.tcl +lib/vmd/plugins/noarch/tcl/pbctools2.5/pbcjoin.tcl +lib/vmd/plugins/noarch/tcl/pbctools2.5/pbcset.tcl +lib/vmd/plugins/noarch/tcl/pbctools2.5/pbctools.tcl +lib/vmd/plugins/noarch/tcl/pbctools2.5/pbcunwrap.tcl +lib/vmd/plugins/noarch/tcl/pbctools2.5/pbcwrap.tcl +lib/vmd/plugins/noarch/tcl/pbctools2.5/pkgIndex.tcl lib/vmd/plugins/noarch/tcl/pdbtool1.0/pdbtool.tcl lib/vmd/plugins/noarch/tcl/pdbtool1.0/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/ramaplot1.0/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/ramaplot1.0/ramaplot.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_analysis.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_data.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_export.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_je.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_matrixviewer.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_newick.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_nexus.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_nodeprops.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/phylotree_widget.tcl +lib/vmd/plugins/noarch/tcl/phylotree1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/psipred1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/psipred1.1/psipred.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/qmtool.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/qmtool_analysis.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/qmtool_atomedit.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/qmtool_aux.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/qmtool_charges.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/qmtool_intcoor.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/qmtool_readwrite.tcl +lib/vmd/plugins/noarch/tcl/qmtool1.1/qmtool_setup.tcl +lib/vmd/plugins/noarch/tcl/ramaplot1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/ramaplot1.1/ramaplot.tcl +lib/vmd/plugins/noarch/tcl/readcharmmpar1.1/par_all27_prot_lipid_na.inp +lib/vmd/plugins/noarch/tcl/readcharmmpar1.1/par_amber2charmm.inp +lib/vmd/plugins/noarch/tcl/readcharmmpar1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/readcharmmpar1.1/readcharmmpar.tcl +lib/vmd/plugins/noarch/tcl/readcharmmtop1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/readcharmmtop1.0/readcharmmtop.tcl +lib/vmd/plugins/noarch/tcl/readcharmmtop1.0/top_all27_hybrid.inp +lib/vmd/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp +lib/vmd/plugins/noarch/tcl/readcharmmtop1.0/top_amber2charmm.inp +lib/vmd/plugins/noarch/tcl/resptool1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/resptool1.1/resptool.tcl lib/vmd/plugins/noarch/tcl/rmsd1.0/pkgIndex.tcl lib/vmd/plugins/noarch/tcl/rmsd1.0/rmsd.tcl -lib/vmd/plugins/noarch/tcl/solvate1.2/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/solvate1.2/solvate.tcl -lib/vmd/plugins/noarch/tcl/solvate1.2/wat.pdb -lib/vmd/plugins/noarch/tcl/solvate1.2/wat.psf -lib/vmd/plugins/noarch/tcl/solvate1.2/wat.top -lib/vmd/plugins/noarch/tcl/timeline1.0/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/timeline1.0/timeline.tcl -lib/vmd/plugins/noarch/tcl/viewmaster2.1/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/viewmaster2.1/viewmaster.tcl -lib/vmd/plugins/noarch/tcl/vmdmovie1.2/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/vmdmovie1.2/vmdmovie.tcl -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/README -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/CVS/Entries -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/CVS/Repository -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/CVS/Root -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/ChangeLog -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/README.txt -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/CVS/Entries -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/CVS/Repository -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/CVS/Root -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/bindings.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/changes.txt -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/demopic.gif -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/dump.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/idebug.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/index.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/license.terms -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/limits.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/nontcl.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/observe.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/perl.txt -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/plugin.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/procs.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/purpose.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/start.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/style.css -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/tkcon.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/todo.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/index.html -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/tkcon.tcl -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-modified.tcl -lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/vmdtkcon.tcl -lib/vmd/plugins/noarch/tcl/zoomseq1.0/pkgIndex.tcl -lib/vmd/plugins/noarch/tcl/zoomseq1.0/zoomseq.tcl +lib/vmd/plugins/noarch/tcl/rmsdtt2.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/rmsdtt2.0/rmsdtt.tcl +lib/vmd/plugins/noarch/tcl/rnaview1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/rnaview1.0/rnaview.tcl +lib/vmd/plugins/noarch/tcl/ruler1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/ruler1.0/ruler.tcl +lib/vmd/plugins/noarch/tcl/runante0.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/runante0.1/runante.tcl +lib/vmd/plugins/noarch/tcl/saltbr1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/saltbr1.0/saltbr.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_aln.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_astral.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_enzyme.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_fasta.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_genbank.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_nex.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_notes.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_pdb.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_phy.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_pir.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_scop.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_swissprot.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_taxonomy.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_temperature.tcl +lib/vmd/plugins/noarch/tcl/seqdata1.1/seqdata_vmd.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum100.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum30.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum35.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum40.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum45.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum50.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum55.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum60.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum62.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum65.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum70.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum75.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum80.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum85.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum90.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosum95.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum/blosumn.bla +lib/vmd/plugins/noarch/tcl/seqedit1.1/clustalw_preferences.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/colormap_default.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/consensus_builder.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/customize_groups.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/get_groupname.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_conservation.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_element.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_entropy.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_import.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_insertions.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_mutualinfo.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_percentid.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_selection.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_signatures.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_similarity.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/metric_type.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/removegaps_options.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit_preview.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit_widget.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit_widget_edit.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit_widget_select.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/seqedit_widget_statusbar.tcl +lib/vmd/plugins/noarch/tcl/seqedit1.1/taxonomy_options.tcl +lib/vmd/plugins/noarch/tcl/solvate1.3/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/solvate1.3/solvate.tcl +lib/vmd/plugins/noarch/tcl/solvate1.3/wat.pdb +lib/vmd/plugins/noarch/tcl/solvate1.3/wat.psf +lib/vmd/plugins/noarch/tcl/solvate1.3/wat.top +lib/vmd/plugins/noarch/tcl/ssrestraints1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/ssrestraints1.0/ssrestraints.tcl +lib/vmd/plugins/noarch/tcl/ssrestraints1.0/ssrestraints_stride.tcl +lib/vmd/plugins/noarch/tcl/stingtool1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/stingtool1.0/stingtool.tcl +lib/vmd/plugins/noarch/tcl/symmetrytool1.2/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/symmetrytool1.2/symmetry.tcl +lib/vmd/plugins/noarch/tcl/timeline2.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/timeline2.0/timeline.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/README +lib/vmd/plugins/noarch/tcl/topotools1.0/par_CG.prm +lib/vmd/plugins/noarch/tcl/topotools1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/top_CG.prm +lib/vmd/plugins/noarch/tcl/topotools1.0/topoangles.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topoatoms.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topobonds.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topocgcmm.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topodihedrals.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topohelpers.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topoimpropers.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topolammps.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topotools.tcl +lib/vmd/plugins/noarch/tcl/topotools1.0/topoutils.tcl +lib/vmd/plugins/noarch/tcl/trunctraj1.5/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/acepar19.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/acepar22_prot.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/acepar27_na.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm/par_amber_98.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm/par_amber_cornell.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm/par_bms_dec03.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm/par_opls_aa.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm/par_opls_ligand.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm/top_amber_cornell.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm/top_bms_dec03.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm/top_opls_aa.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all22_prot.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all22_prot_cmap.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all22_sugar.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all27_lipid.prm +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all27_na.prm +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all27_na_lipid.prm +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all27_prot_lipid.prm +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all27_prot_na.prm +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_all30_cheq_prot.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/par_hbond.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/param19.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/pardna10_22.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all22_prot_aldehydes.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all22_prot_aliphatic_c27.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all22_prot_fluoro_alkanes.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all22_prot_heme.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all22_prot_model.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all22_prot_pyridines.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all27_lipid_cholesterol.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all27_lipid_model.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all27_na_base_modifications.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all27_na_bkb_modifications.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all27_na_carbocyclic.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all27_na_model.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_all27_na_nad_ppi.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_amines.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_dum_nobel_gases.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_hbond.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_prot_na_all.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream/toppar_water_ions.str +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all22_prot.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all22_prot_cmap.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all22_sugar.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all27_lipid.rtf +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all27_na.rtf +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all27_na_lipid.rtf +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all27_prot_lipid.rtf +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all27_prot_na.rtf +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/top_all30_cheq_prot.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/toph19.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/toprna10r_22.inp +lib/vmd/plugins/noarch/tcl/trunctraj1.5/trunctraj.tcl +lib/vmd/plugins/noarch/tcl/utilities1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/utilities1.0/utilities.tcl +lib/vmd/plugins/noarch/tcl/vdna2.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/vdna2.0/vdna.tcl +lib/vmd/plugins/noarch/tcl/viewmaster2.2/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/viewmaster2.2/viewmaster.tcl +lib/vmd/plugins/noarch/tcl/vmdmovie1.7/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/vmdmovie1.7/vmdmovie.tcl +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/README +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/CVS/Entries +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/CVS/Repository +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/CVS/Root +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/ChangeLog +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/README.txt +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/CVS/Entries +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/CVS/Repository +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/CVS/Root +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/bindings.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/changes.txt +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/demopic.gif +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/dump.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/idebug.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/index.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/license.terms +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/limits.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/nontcl.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/observe.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/perl.txt +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/plugin.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/procs.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/purpose.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/start.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/style.css +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/tkcon.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/todo.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/index.html +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/tkcon.tcl +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-modified.tcl +lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/vmdtkcon.tcl +lib/vmd/plugins/noarch/tcl/volmapgui1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/volmapgui1.1/volmapgui.tcl +lib/vmd/plugins/noarch/tcl/zoomseq1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/zoomseq1.1/zoomseq.tcl lib/vmd/scripts/CVS/Entries lib/vmd/scripts/CVS/Repository lib/vmd/scripts/CVS/Root @@ -151,241 +606,414 @@ lib/vmd/scripts/python/Molecule.py lib/vmd/scripts/python/Tkinter.py lib/vmd/scripts/python/VMD.py +lib/vmd/scripts/python/hotkeys.py lib/vmd/scripts/python/startvmd.py lib/vmd/scripts/python/testMolecule.py lib/vmd/scripts/python/testdisplay.py -lib/vmd/scripts/tcl -lib/vmd/scripts/tcl8.0 -lib/vmd/scripts/tk -lib/vmd/scripts/tk8.0 -lib/vmd/scripts/tcl8.4/auto.tcl -lib/vmd/scripts/tcl8.4/encoding/ascii.enc -lib/vmd/scripts/tcl8.4/encoding/big5.enc -lib/vmd/scripts/tcl8.4/encoding/cp1250.enc -lib/vmd/scripts/tcl8.4/encoding/cp1251.enc -lib/vmd/scripts/tcl8.4/encoding/cp1252.enc -lib/vmd/scripts/tcl8.4/encoding/cp1253.enc -lib/vmd/scripts/tcl8.4/encoding/cp1254.enc -lib/vmd/scripts/tcl8.4/encoding/cp1255.enc -lib/vmd/scripts/tcl8.4/encoding/cp1256.enc -lib/vmd/scripts/tcl8.4/encoding/cp1257.enc -lib/vmd/scripts/tcl8.4/encoding/cp1258.enc -lib/vmd/scripts/tcl8.4/encoding/cp437.enc -lib/vmd/scripts/tcl8.4/encoding/cp737.enc -lib/vmd/scripts/tcl8.4/encoding/cp775.enc -lib/vmd/scripts/tcl8.4/encoding/cp850.enc -lib/vmd/scripts/tcl8.4/encoding/cp852.enc -lib/vmd/scripts/tcl8.4/encoding/cp855.enc -lib/vmd/scripts/tcl8.4/encoding/cp857.enc -lib/vmd/scripts/tcl8.4/encoding/cp860.enc -lib/vmd/scripts/tcl8.4/encoding/cp861.enc -lib/vmd/scripts/tcl8.4/encoding/cp862.enc -lib/vmd/scripts/tcl8.4/encoding/cp863.enc -lib/vmd/scripts/tcl8.4/encoding/cp864.enc -lib/vmd/scripts/tcl8.4/encoding/cp865.enc -lib/vmd/scripts/tcl8.4/encoding/cp866.enc -lib/vmd/scripts/tcl8.4/encoding/cp869.enc -lib/vmd/scripts/tcl8.4/encoding/cp874.enc -lib/vmd/scripts/tcl8.4/encoding/cp932.enc -lib/vmd/scripts/tcl8.4/encoding/cp936.enc -lib/vmd/scripts/tcl8.4/encoding/cp949.enc -lib/vmd/scripts/tcl8.4/encoding/cp950.enc -lib/vmd/scripts/tcl8.4/encoding/dingbats.enc -lib/vmd/scripts/tcl8.4/encoding/ebcdic.enc -lib/vmd/scripts/tcl8.4/encoding/euc-cn.enc -lib/vmd/scripts/tcl8.4/encoding/euc-jp.enc -lib/vmd/scripts/tcl8.4/encoding/euc-kr.enc -lib/vmd/scripts/tcl8.4/encoding/gb12345.enc -lib/vmd/scripts/tcl8.4/encoding/gb1988.enc -lib/vmd/scripts/tcl8.4/encoding/gb2312.enc -lib/vmd/scripts/tcl8.4/encoding/iso2022-jp.enc -lib/vmd/scripts/tcl8.4/encoding/iso2022-kr.enc -lib/vmd/scripts/tcl8.4/encoding/iso2022.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-1.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-10.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-13.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-14.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-15.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-16.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-2.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-3.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-4.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-5.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-6.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-7.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-8.enc -lib/vmd/scripts/tcl8.4/encoding/iso8859-9.enc -lib/vmd/scripts/tcl8.4/encoding/jis0201.enc -lib/vmd/scripts/tcl8.4/encoding/jis0208.enc -lib/vmd/scripts/tcl8.4/encoding/jis0212.enc -lib/vmd/scripts/tcl8.4/encoding/koi8-r.enc -lib/vmd/scripts/tcl8.4/encoding/koi8-u.enc -lib/vmd/scripts/tcl8.4/encoding/ksc5601.enc -lib/vmd/scripts/tcl8.4/encoding/macCentEuro.enc -lib/vmd/scripts/tcl8.4/encoding/macCroatian.enc -lib/vmd/scripts/tcl8.4/encoding/macCyrillic.enc -lib/vmd/scripts/tcl8.4/encoding/macDingbats.enc -lib/vmd/scripts/tcl8.4/encoding/macGreek.enc -lib/vmd/scripts/tcl8.4/encoding/macIceland.enc -lib/vmd/scripts/tcl8.4/encoding/macJapan.enc -lib/vmd/scripts/tcl8.4/encoding/macRoman.enc -lib/vmd/scripts/tcl8.4/encoding/macRomania.enc -lib/vmd/scripts/tcl8.4/encoding/macThai.enc -lib/vmd/scripts/tcl8.4/encoding/macTurkish.enc -lib/vmd/scripts/tcl8.4/encoding/macUkraine.enc -lib/vmd/scripts/tcl8.4/encoding/shiftjis.enc -lib/vmd/scripts/tcl8.4/encoding/symbol.enc -lib/vmd/scripts/tcl8.4/encoding/tis-620.enc -lib/vmd/scripts/tcl8.4/history.tcl -lib/vmd/scripts/tcl8.4/http1.0/http.tcl -lib/vmd/scripts/tcl8.4/http1.0/pkgIndex.tcl -lib/vmd/scripts/tcl8.4/http2.4/http.tcl -lib/vmd/scripts/tcl8.4/http2.4/pkgIndex.tcl -lib/vmd/scripts/tcl8.4/init.tcl -lib/vmd/scripts/tcl8.4/ldAix -lib/vmd/scripts/tcl8.4/ldAout.tcl -lib/vmd/scripts/tcl8.4/msgcat1.3/msgcat.tcl -lib/vmd/scripts/tcl8.4/msgcat1.3/pkgIndex.tcl -lib/vmd/scripts/tcl8.4/opt0.4/optparse.tcl -lib/vmd/scripts/tcl8.4/opt0.4/pkgIndex.tcl -lib/vmd/scripts/tcl8.4/package.tcl -lib/vmd/scripts/tcl8.4/parray.tcl -lib/vmd/scripts/tcl8.4/safe.tcl -lib/vmd/scripts/tcl8.4/tclAppInit.c -lib/vmd/scripts/tcl8.4/tclIndex -lib/vmd/scripts/tcl8.4/tcltest2.2/pkgIndex.tcl -lib/vmd/scripts/tcl8.4/tcltest2.2/tcltest.tcl -lib/vmd/scripts/tcl8.4/word.tcl -lib/vmd/scripts/tk8.4/bgerror.tcl -lib/vmd/scripts/tk8.4/button.tcl -lib/vmd/scripts/tk8.4/choosedir.tcl -lib/vmd/scripts/tk8.4/clrpick.tcl -lib/vmd/scripts/tk8.4/comdlg.tcl -lib/vmd/scripts/tk8.4/console.tcl -lib/vmd/scripts/tk8.4/demos/README -lib/vmd/scripts/tk8.4/demos/arrow.tcl -lib/vmd/scripts/tk8.4/demos/bind.tcl -lib/vmd/scripts/tk8.4/demos/bitmap.tcl -lib/vmd/scripts/tk8.4/demos/browse -lib/vmd/scripts/tk8.4/demos/button.tcl -lib/vmd/scripts/tk8.4/demos/check.tcl -lib/vmd/scripts/tk8.4/demos/clrpick.tcl -lib/vmd/scripts/tk8.4/demos/colors.tcl -lib/vmd/scripts/tk8.4/demos/cscroll.tcl -lib/vmd/scripts/tk8.4/demos/ctext.tcl -lib/vmd/scripts/tk8.4/demos/dialog1.tcl -lib/vmd/scripts/tk8.4/demos/dialog2.tcl -lib/vmd/scripts/tk8.4/demos/entry1.tcl -lib/vmd/scripts/tk8.4/demos/entry2.tcl -lib/vmd/scripts/tk8.4/demos/entry3.tcl -lib/vmd/scripts/tk8.4/demos/filebox.tcl -lib/vmd/scripts/tk8.4/demos/floor.tcl -lib/vmd/scripts/tk8.4/demos/form.tcl -lib/vmd/scripts/tk8.4/demos/hello -lib/vmd/scripts/tk8.4/demos/hscale.tcl -lib/vmd/scripts/tk8.4/demos/icon.tcl -lib/vmd/scripts/tk8.4/demos/image1.tcl -lib/vmd/scripts/tk8.4/demos/image2.tcl -lib/vmd/scripts/tk8.4/demos/images/earth.gif -lib/vmd/scripts/tk8.4/demos/images/earthris.gif -lib/vmd/scripts/tk8.4/demos/images/face.bmp -lib/vmd/scripts/tk8.4/demos/images/flagdown.bmp -lib/vmd/scripts/tk8.4/demos/images/flagup.bmp -lib/vmd/scripts/tk8.4/demos/images/gray25.bmp -lib/vmd/scripts/tk8.4/demos/images/letters.bmp -lib/vmd/scripts/tk8.4/demos/images/noletter.bmp -lib/vmd/scripts/tk8.4/demos/images/pattern.bmp -lib/vmd/scripts/tk8.4/demos/images/tcllogo.gif -lib/vmd/scripts/tk8.4/demos/images/teapot.ppm -lib/vmd/scripts/tk8.4/demos/items.tcl -lib/vmd/scripts/tk8.4/demos/ixset -lib/vmd/scripts/tk8.4/demos/label.tcl -lib/vmd/scripts/tk8.4/demos/labelframe.tcl -lib/vmd/scripts/tk8.4/demos/license.terms -lib/vmd/scripts/tk8.4/demos/menu.tcl -lib/vmd/scripts/tk8.4/demos/menubu.tcl -lib/vmd/scripts/tk8.4/demos/msgbox.tcl -lib/vmd/scripts/tk8.4/demos/paned1.tcl -lib/vmd/scripts/tk8.4/demos/paned2.tcl -lib/vmd/scripts/tk8.4/demos/plot.tcl -lib/vmd/scripts/tk8.4/demos/puzzle.tcl -lib/vmd/scripts/tk8.4/demos/radio.tcl -lib/vmd/scripts/tk8.4/demos/rmt -lib/vmd/scripts/tk8.4/demos/rolodex -lib/vmd/scripts/tk8.4/demos/ruler.tcl -lib/vmd/scripts/tk8.4/demos/sayings.tcl -lib/vmd/scripts/tk8.4/demos/search.tcl -lib/vmd/scripts/tk8.4/demos/spin.tcl -lib/vmd/scripts/tk8.4/demos/square -lib/vmd/scripts/tk8.4/demos/states.tcl -lib/vmd/scripts/tk8.4/demos/style.tcl -lib/vmd/scripts/tk8.4/demos/tclIndex -lib/vmd/scripts/tk8.4/demos/tcolor -lib/vmd/scripts/tk8.4/demos/text.tcl -lib/vmd/scripts/tk8.4/demos/timer -lib/vmd/scripts/tk8.4/demos/twind.tcl -lib/vmd/scripts/tk8.4/demos/vscale.tcl -lib/vmd/scripts/tk8.4/demos/widget -lib/vmd/scripts/tk8.4/dialog.tcl -lib/vmd/scripts/tk8.4/entry.tcl -lib/vmd/scripts/tk8.4/focus.tcl -lib/vmd/scripts/tk8.4/images/README -lib/vmd/scripts/tk8.4/images/logo.eps -lib/vmd/scripts/tk8.4/images/logo100.gif -lib/vmd/scripts/tk8.4/images/logo64.gif -lib/vmd/scripts/tk8.4/images/logoLarge.gif -lib/vmd/scripts/tk8.4/images/logoMed.gif -lib/vmd/scripts/tk8.4/images/pwrdLogo.eps -lib/vmd/scripts/tk8.4/images/pwrdLogo100.gif -lib/vmd/scripts/tk8.4/images/pwrdLogo150.gif -lib/vmd/scripts/tk8.4/images/pwrdLogo175.gif -lib/vmd/scripts/tk8.4/images/pwrdLogo200.gif -lib/vmd/scripts/tk8.4/images/pwrdLogo75.gif -lib/vmd/scripts/tk8.4/images/tai-ku.gif -lib/vmd/scripts/tk8.4/listbox.tcl -lib/vmd/scripts/tk8.4/menu.tcl -lib/vmd/scripts/tk8.4/mkpsenc.tcl -lib/vmd/scripts/tk8.4/msgbox.tcl -lib/vmd/scripts/tk8.4/msgs/cs.msg -lib/vmd/scripts/tk8.4/msgs/de.msg -lib/vmd/scripts/tk8.4/msgs/el.msg -lib/vmd/scripts/tk8.4/msgs/en.msg -lib/vmd/scripts/tk8.4/msgs/en_gb.msg -lib/vmd/scripts/tk8.4/msgs/es.msg -lib/vmd/scripts/tk8.4/msgs/fr.msg -lib/vmd/scripts/tk8.4/msgs/it.msg -lib/vmd/scripts/tk8.4/msgs/nl.msg -lib/vmd/scripts/tk8.4/msgs/ru.msg -lib/vmd/scripts/tk8.4/obsolete.tcl -lib/vmd/scripts/tk8.4/optMenu.tcl -lib/vmd/scripts/tk8.4/palette.tcl -lib/vmd/scripts/tk8.4/panedwindow.tcl -lib/vmd/scripts/tk8.4/prolog.ps -lib/vmd/scripts/tk8.4/safetk.tcl -lib/vmd/scripts/tk8.4/scale.tcl -lib/vmd/scripts/tk8.4/scrlbar.tcl -lib/vmd/scripts/tk8.4/spinbox.tcl -lib/vmd/scripts/tk8.4/tclIndex -lib/vmd/scripts/tk8.4/tearoff.tcl -lib/vmd/scripts/tk8.4/text.tcl -lib/vmd/scripts/tk8.4/tk.tcl -lib/vmd/scripts/tk8.4/tkAppInit.c -lib/vmd/scripts/tk8.4/tkfbox.tcl -lib/vmd/scripts/tk8.4/unsupported.tcl -lib/vmd/scripts/tk8.4/xmfbox.tcl +lib/vmd/scripts/tcl8.5/auto.tcl +lib/vmd/scripts/tcl8.5/clock.tcl +lib/vmd/scripts/tcl8.5/encoding/ascii.enc +lib/vmd/scripts/tcl8.5/encoding/big5.enc +lib/vmd/scripts/tcl8.5/encoding/cp1250.enc +lib/vmd/scripts/tcl8.5/encoding/cp1251.enc +lib/vmd/scripts/tcl8.5/encoding/cp1252.enc +lib/vmd/scripts/tcl8.5/encoding/cp1253.enc +lib/vmd/scripts/tcl8.5/encoding/cp1254.enc +lib/vmd/scripts/tcl8.5/encoding/cp1255.enc +lib/vmd/scripts/tcl8.5/encoding/cp1256.enc +lib/vmd/scripts/tcl8.5/encoding/cp1257.enc +lib/vmd/scripts/tcl8.5/encoding/cp1258.enc +lib/vmd/scripts/tcl8.5/encoding/cp437.enc +lib/vmd/scripts/tcl8.5/encoding/cp737.enc +lib/vmd/scripts/tcl8.5/encoding/cp775.enc +lib/vmd/scripts/tcl8.5/encoding/cp850.enc +lib/vmd/scripts/tcl8.5/encoding/cp852.enc +lib/vmd/scripts/tcl8.5/encoding/cp855.enc +lib/vmd/scripts/tcl8.5/encoding/cp857.enc +lib/vmd/scripts/tcl8.5/encoding/cp860.enc +lib/vmd/scripts/tcl8.5/encoding/cp861.enc +lib/vmd/scripts/tcl8.5/encoding/cp862.enc +lib/vmd/scripts/tcl8.5/encoding/cp863.enc +lib/vmd/scripts/tcl8.5/encoding/cp864.enc +lib/vmd/scripts/tcl8.5/encoding/cp865.enc +lib/vmd/scripts/tcl8.5/encoding/cp866.enc +lib/vmd/scripts/tcl8.5/encoding/cp869.enc +lib/vmd/scripts/tcl8.5/encoding/cp874.enc +lib/vmd/scripts/tcl8.5/encoding/cp932.enc +lib/vmd/scripts/tcl8.5/encoding/cp936.enc +lib/vmd/scripts/tcl8.5/encoding/cp949.enc +lib/vmd/scripts/tcl8.5/encoding/cp950.enc +lib/vmd/scripts/tcl8.5/encoding/dingbats.enc +lib/vmd/scripts/tcl8.5/encoding/ebcdic.enc +lib/vmd/scripts/tcl8.5/encoding/euc-cn.enc +lib/vmd/scripts/tcl8.5/encoding/euc-jp.enc +lib/vmd/scripts/tcl8.5/encoding/euc-kr.enc +lib/vmd/scripts/tcl8.5/encoding/gb12345.enc +lib/vmd/scripts/tcl8.5/encoding/gb1988.enc +lib/vmd/scripts/tcl8.5/encoding/gb2312-raw.enc +lib/vmd/scripts/tcl8.5/encoding/gb2312.enc +lib/vmd/scripts/tcl8.5/encoding/iso2022-jp.enc +lib/vmd/scripts/tcl8.5/encoding/iso2022-kr.enc +lib/vmd/scripts/tcl8.5/encoding/iso2022.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-1.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-10.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-13.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-14.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-15.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-16.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-2.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-3.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-4.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-5.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-6.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-7.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-8.enc +lib/vmd/scripts/tcl8.5/encoding/iso8859-9.enc +lib/vmd/scripts/tcl8.5/encoding/jis0201.enc +lib/vmd/scripts/tcl8.5/encoding/jis0208.enc +lib/vmd/scripts/tcl8.5/encoding/jis0212.enc +lib/vmd/scripts/tcl8.5/encoding/koi8-r.enc +lib/vmd/scripts/tcl8.5/encoding/koi8-u.enc +lib/vmd/scripts/tcl8.5/encoding/ksc5601.enc +lib/vmd/scripts/tcl8.5/encoding/macCentEuro.enc +lib/vmd/scripts/tcl8.5/encoding/macCroatian.enc +lib/vmd/scripts/tcl8.5/encoding/macCyrillic.enc +lib/vmd/scripts/tcl8.5/encoding/macDingbats.enc +lib/vmd/scripts/tcl8.5/encoding/macGreek.enc +lib/vmd/scripts/tcl8.5/encoding/macIceland.enc +lib/vmd/scripts/tcl8.5/encoding/macJapan.enc +lib/vmd/scripts/tcl8.5/encoding/macRoman.enc +lib/vmd/scripts/tcl8.5/encoding/macRomania.enc +lib/vmd/scripts/tcl8.5/encoding/macThai.enc +lib/vmd/scripts/tcl8.5/encoding/macTurkish.enc +lib/vmd/scripts/tcl8.5/encoding/macUkraine.enc +lib/vmd/scripts/tcl8.5/encoding/shiftjis.enc +lib/vmd/scripts/tcl8.5/encoding/symbol.enc +lib/vmd/scripts/tcl8.5/encoding/tis-620.enc +lib/vmd/scripts/tcl8.5/history.tcl +lib/vmd/scripts/tcl8.5/http1.0/http.tcl +lib/vmd/scripts/tcl8.5/http1.0/pkgIndex.tcl +lib/vmd/scripts/tcl8.5/init.tcl +lib/vmd/scripts/tcl8.5/ldAix +lib/vmd/scripts/tcl8.5/msgs/af.msg +lib/vmd/scripts/tcl8.5/msgs/af_za.msg +lib/vmd/scripts/tcl8.5/msgs/ar.msg +lib/vmd/scripts/tcl8.5/msgs/ar_in.msg +lib/vmd/scripts/tcl8.5/msgs/ar_jo.msg +lib/vmd/scripts/tcl8.5/msgs/ar_lb.msg +lib/vmd/scripts/tcl8.5/msgs/ar_sy.msg +lib/vmd/scripts/tcl8.5/msgs/be.msg +lib/vmd/scripts/tcl8.5/msgs/bg.msg +lib/vmd/scripts/tcl8.5/msgs/bn.msg +lib/vmd/scripts/tcl8.5/msgs/bn_in.msg +lib/vmd/scripts/tcl8.5/msgs/ca.msg +lib/vmd/scripts/tcl8.5/msgs/cs.msg +lib/vmd/scripts/tcl8.5/msgs/da.msg +lib/vmd/scripts/tcl8.5/msgs/de.msg +lib/vmd/scripts/tcl8.5/msgs/de_at.msg +lib/vmd/scripts/tcl8.5/msgs/de_be.msg +lib/vmd/scripts/tcl8.5/msgs/el.msg +lib/vmd/scripts/tcl8.5/msgs/en_au.msg +lib/vmd/scripts/tcl8.5/msgs/en_be.msg +lib/vmd/scripts/tcl8.5/msgs/en_bw.msg +lib/vmd/scripts/tcl8.5/msgs/en_ca.msg +lib/vmd/scripts/tcl8.5/msgs/en_gb.msg +lib/vmd/scripts/tcl8.5/msgs/en_hk.msg +lib/vmd/scripts/tcl8.5/msgs/en_ie.msg +lib/vmd/scripts/tcl8.5/msgs/en_in.msg +lib/vmd/scripts/tcl8.5/msgs/en_nz.msg +lib/vmd/scripts/tcl8.5/msgs/en_ph.msg +lib/vmd/scripts/tcl8.5/msgs/en_sg.msg +lib/vmd/scripts/tcl8.5/msgs/en_za.msg +lib/vmd/scripts/tcl8.5/msgs/en_zw.msg +lib/vmd/scripts/tcl8.5/msgs/eo.msg +lib/vmd/scripts/tcl8.5/msgs/es.msg +lib/vmd/scripts/tcl8.5/msgs/es_ar.msg +lib/vmd/scripts/tcl8.5/msgs/es_bo.msg +lib/vmd/scripts/tcl8.5/msgs/es_cl.msg +lib/vmd/scripts/tcl8.5/msgs/es_co.msg +lib/vmd/scripts/tcl8.5/msgs/es_cr.msg +lib/vmd/scripts/tcl8.5/msgs/es_do.msg +lib/vmd/scripts/tcl8.5/msgs/es_ec.msg +lib/vmd/scripts/tcl8.5/msgs/es_gt.msg +lib/vmd/scripts/tcl8.5/msgs/es_hn.msg +lib/vmd/scripts/tcl8.5/msgs/es_mx.msg +lib/vmd/scripts/tcl8.5/msgs/es_ni.msg +lib/vmd/scripts/tcl8.5/msgs/es_pa.msg +lib/vmd/scripts/tcl8.5/msgs/es_pe.msg +lib/vmd/scripts/tcl8.5/msgs/es_pr.msg +lib/vmd/scripts/tcl8.5/msgs/es_py.msg +lib/vmd/scripts/tcl8.5/msgs/es_sv.msg +lib/vmd/scripts/tcl8.5/msgs/es_uy.msg +lib/vmd/scripts/tcl8.5/msgs/es_ve.msg +lib/vmd/scripts/tcl8.5/msgs/et.msg +lib/vmd/scripts/tcl8.5/msgs/eu.msg +lib/vmd/scripts/tcl8.5/msgs/eu_es.msg +lib/vmd/scripts/tcl8.5/msgs/fa.msg +lib/vmd/scripts/tcl8.5/msgs/fa_in.msg +lib/vmd/scripts/tcl8.5/msgs/fa_ir.msg +lib/vmd/scripts/tcl8.5/msgs/fi.msg +lib/vmd/scripts/tcl8.5/msgs/fo.msg +lib/vmd/scripts/tcl8.5/msgs/fo_fo.msg +lib/vmd/scripts/tcl8.5/msgs/fr.msg +lib/vmd/scripts/tcl8.5/msgs/fr_be.msg +lib/vmd/scripts/tcl8.5/msgs/fr_ca.msg +lib/vmd/scripts/tcl8.5/msgs/fr_ch.msg +lib/vmd/scripts/tcl8.5/msgs/ga.msg +lib/vmd/scripts/tcl8.5/msgs/ga_ie.msg +lib/vmd/scripts/tcl8.5/msgs/gl.msg +lib/vmd/scripts/tcl8.5/msgs/gl_es.msg +lib/vmd/scripts/tcl8.5/msgs/gv.msg +lib/vmd/scripts/tcl8.5/msgs/gv_gb.msg +lib/vmd/scripts/tcl8.5/msgs/he.msg +lib/vmd/scripts/tcl8.5/msgs/hi.msg +lib/vmd/scripts/tcl8.5/msgs/hi_in.msg +lib/vmd/scripts/tcl8.5/msgs/hr.msg +lib/vmd/scripts/tcl8.5/msgs/hu.msg +lib/vmd/scripts/tcl8.5/msgs/id.msg +lib/vmd/scripts/tcl8.5/msgs/id_id.msg +lib/vmd/scripts/tcl8.5/msgs/is.msg +lib/vmd/scripts/tcl8.5/msgs/it.msg +lib/vmd/scripts/tcl8.5/msgs/it_ch.msg +lib/vmd/scripts/tcl8.5/msgs/ja.msg +lib/vmd/scripts/tcl8.5/msgs/kl.msg +lib/vmd/scripts/tcl8.5/msgs/kl_gl.msg +lib/vmd/scripts/tcl8.5/msgs/ko.msg +lib/vmd/scripts/tcl8.5/msgs/ko_kr.msg +lib/vmd/scripts/tcl8.5/msgs/kok.msg +lib/vmd/scripts/tcl8.5/msgs/kok_in.msg +lib/vmd/scripts/tcl8.5/msgs/kw.msg +lib/vmd/scripts/tcl8.5/msgs/kw_gb.msg +lib/vmd/scripts/tcl8.5/msgs/lt.msg +lib/vmd/scripts/tcl8.5/msgs/lv.msg +lib/vmd/scripts/tcl8.5/msgs/mk.msg +lib/vmd/scripts/tcl8.5/msgs/mr.msg +lib/vmd/scripts/tcl8.5/msgs/mr_in.msg +lib/vmd/scripts/tcl8.5/msgs/ms.msg +lib/vmd/scripts/tcl8.5/msgs/ms_my.msg +lib/vmd/scripts/tcl8.5/msgs/mt.msg +lib/vmd/scripts/tcl8.5/msgs/nb.msg +lib/vmd/scripts/tcl8.5/msgs/nl.msg +lib/vmd/scripts/tcl8.5/msgs/nl_be.msg +lib/vmd/scripts/tcl8.5/msgs/nn.msg +lib/vmd/scripts/tcl8.5/msgs/pl.msg +lib/vmd/scripts/tcl8.5/msgs/pt.msg +lib/vmd/scripts/tcl8.5/msgs/pt_br.msg +lib/vmd/scripts/tcl8.5/msgs/ro.msg +lib/vmd/scripts/tcl8.5/msgs/ru.msg +lib/vmd/scripts/tcl8.5/msgs/ru_ua.msg +lib/vmd/scripts/tcl8.5/msgs/sh.msg +lib/vmd/scripts/tcl8.5/msgs/sk.msg +lib/vmd/scripts/tcl8.5/msgs/sl.msg +lib/vmd/scripts/tcl8.5/msgs/sq.msg +lib/vmd/scripts/tcl8.5/msgs/sr.msg +lib/vmd/scripts/tcl8.5/msgs/sv.msg +lib/vmd/scripts/tcl8.5/msgs/sw.msg +lib/vmd/scripts/tcl8.5/msgs/ta.msg +lib/vmd/scripts/tcl8.5/msgs/ta_in.msg +lib/vmd/scripts/tcl8.5/msgs/te.msg +lib/vmd/scripts/tcl8.5/msgs/te_in.msg +lib/vmd/scripts/tcl8.5/msgs/th.msg +lib/vmd/scripts/tcl8.5/msgs/tr.msg +lib/vmd/scripts/tcl8.5/msgs/uk.msg +lib/vmd/scripts/tcl8.5/msgs/vi.msg +lib/vmd/scripts/tcl8.5/msgs/zh.msg +lib/vmd/scripts/tcl8.5/msgs/zh_cn.msg +lib/vmd/scripts/tcl8.5/msgs/zh_hk.msg +lib/vmd/scripts/tcl8.5/msgs/zh_sg.msg +lib/vmd/scripts/tcl8.5/msgs/zh_tw.msg +lib/vmd/scripts/tcl8.5/opt0.4/optparse.tcl +lib/vmd/scripts/tcl8.5/opt0.4/pkgIndex.tcl +lib/vmd/scripts/tcl8.5/package.tcl +lib/vmd/scripts/tcl8.5/parray.tcl +lib/vmd/scripts/tcl8.5/safe.tcl +lib/vmd/scripts/tcl8.5/tclAppInit.c +lib/vmd/scripts/tcl8.5/tclIndex +lib/vmd/scripts/tcl8.5/tm.tcl +lib/vmd/scripts/tcl8.5/word.tcl +lib/vmd/scripts/tcl8/8.4/http-2.7.2.tm +lib/vmd/scripts/tcl8/8.4/platform-1.0.3.tm +lib/vmd/scripts/tcl8/8.4/platform/shell-1.1.4.tm +lib/vmd/scripts/tcl8/8.5/msgcat-1.4.2.tm +lib/vmd/scripts/tcl8/8.5/tcltest-2.3.0.tm +lib/vmd/scripts/tk8.5/bgerror.tcl +lib/vmd/scripts/tk8.5/button.tcl +lib/vmd/scripts/tk8.5/choosedir.tcl +lib/vmd/scripts/tk8.5/clrpick.tcl +lib/vmd/scripts/tk8.5/comdlg.tcl +lib/vmd/scripts/tk8.5/console.tcl +lib/vmd/scripts/tk8.5/demos/README +lib/vmd/scripts/tk8.5/demos/anilabel.tcl +lib/vmd/scripts/tk8.5/demos/aniwave.tcl +lib/vmd/scripts/tk8.5/demos/arrow.tcl +lib/vmd/scripts/tk8.5/demos/bind.tcl +lib/vmd/scripts/tk8.5/demos/bitmap.tcl +lib/vmd/scripts/tk8.5/demos/browse +lib/vmd/scripts/tk8.5/demos/button.tcl +lib/vmd/scripts/tk8.5/demos/check.tcl +lib/vmd/scripts/tk8.5/demos/clrpick.tcl +lib/vmd/scripts/tk8.5/demos/colors.tcl +lib/vmd/scripts/tk8.5/demos/combo.tcl +lib/vmd/scripts/tk8.5/demos/cscroll.tcl +lib/vmd/scripts/tk8.5/demos/ctext.tcl +lib/vmd/scripts/tk8.5/demos/dialog1.tcl +lib/vmd/scripts/tk8.5/demos/dialog2.tcl +lib/vmd/scripts/tk8.5/demos/en.msg +lib/vmd/scripts/tk8.5/demos/entry1.tcl +lib/vmd/scripts/tk8.5/demos/entry2.tcl +lib/vmd/scripts/tk8.5/demos/entry3.tcl +lib/vmd/scripts/tk8.5/demos/filebox.tcl +lib/vmd/scripts/tk8.5/demos/floor.tcl +lib/vmd/scripts/tk8.5/demos/form.tcl +lib/vmd/scripts/tk8.5/demos/goldberg.tcl +lib/vmd/scripts/tk8.5/demos/hello +lib/vmd/scripts/tk8.5/demos/hscale.tcl +lib/vmd/scripts/tk8.5/demos/icon.tcl +lib/vmd/scripts/tk8.5/demos/image1.tcl +lib/vmd/scripts/tk8.5/demos/image2.tcl +lib/vmd/scripts/tk8.5/demos/images/earth.gif +lib/vmd/scripts/tk8.5/demos/images/earthris.gif +lib/vmd/scripts/tk8.5/demos/images/face.xbm +lib/vmd/scripts/tk8.5/demos/images/flagdown.xbm +lib/vmd/scripts/tk8.5/demos/images/flagup.xbm +lib/vmd/scripts/tk8.5/demos/images/gray25.xbm +lib/vmd/scripts/tk8.5/demos/images/letters.xbm +lib/vmd/scripts/tk8.5/demos/images/noletter.xbm +lib/vmd/scripts/tk8.5/demos/images/pattern.xbm +lib/vmd/scripts/tk8.5/demos/images/tcllogo.gif +lib/vmd/scripts/tk8.5/demos/images/teapot.ppm +lib/vmd/scripts/tk8.5/demos/items.tcl +lib/vmd/scripts/tk8.5/demos/ixset +lib/vmd/scripts/tk8.5/demos/knightstour.tcl +lib/vmd/scripts/tk8.5/demos/label.tcl +lib/vmd/scripts/tk8.5/demos/labelframe.tcl +lib/vmd/scripts/tk8.5/demos/license.terms +lib/vmd/scripts/tk8.5/demos/mclist.tcl +lib/vmd/scripts/tk8.5/demos/menu.tcl +lib/vmd/scripts/tk8.5/demos/menubu.tcl +lib/vmd/scripts/tk8.5/demos/msgbox.tcl +lib/vmd/scripts/tk8.5/demos/nl.msg +lib/vmd/scripts/tk8.5/demos/paned1.tcl +lib/vmd/scripts/tk8.5/demos/paned2.tcl +lib/vmd/scripts/tk8.5/demos/pendulum.tcl +lib/vmd/scripts/tk8.5/demos/plot.tcl +lib/vmd/scripts/tk8.5/demos/puzzle.tcl +lib/vmd/scripts/tk8.5/demos/radio.tcl +lib/vmd/scripts/tk8.5/demos/rmt +lib/vmd/scripts/tk8.5/demos/rolodex +lib/vmd/scripts/tk8.5/demos/ruler.tcl +lib/vmd/scripts/tk8.5/demos/sayings.tcl +lib/vmd/scripts/tk8.5/demos/search.tcl +lib/vmd/scripts/tk8.5/demos/spin.tcl +lib/vmd/scripts/tk8.5/demos/square +lib/vmd/scripts/tk8.5/demos/states.tcl +lib/vmd/scripts/tk8.5/demos/style.tcl +lib/vmd/scripts/tk8.5/demos/tclIndex +lib/vmd/scripts/tk8.5/demos/tcolor +lib/vmd/scripts/tk8.5/demos/text.tcl +lib/vmd/scripts/tk8.5/demos/textpeer.tcl +lib/vmd/scripts/tk8.5/demos/timer +lib/vmd/scripts/tk8.5/demos/toolbar.tcl +lib/vmd/scripts/tk8.5/demos/tree.tcl +lib/vmd/scripts/tk8.5/demos/ttkbut.tcl +lib/vmd/scripts/tk8.5/demos/ttkmenu.tcl +lib/vmd/scripts/tk8.5/demos/ttknote.tcl +lib/vmd/scripts/tk8.5/demos/ttkpane.tcl +lib/vmd/scripts/tk8.5/demos/ttkprogress.tcl +lib/vmd/scripts/tk8.5/demos/twind.tcl +lib/vmd/scripts/tk8.5/demos/unicodeout.tcl +lib/vmd/scripts/tk8.5/demos/vscale.tcl +lib/vmd/scripts/tk8.5/demos/widget +lib/vmd/scripts/tk8.5/dialog.tcl +lib/vmd/scripts/tk8.5/entry.tcl +lib/vmd/scripts/tk8.5/focus.tcl +lib/vmd/scripts/tk8.5/images/README +lib/vmd/scripts/tk8.5/images/logo.eps +lib/vmd/scripts/tk8.5/images/logo100.gif +lib/vmd/scripts/tk8.5/images/logo64.gif +lib/vmd/scripts/tk8.5/images/logoLarge.gif +lib/vmd/scripts/tk8.5/images/logoMed.gif +lib/vmd/scripts/tk8.5/images/pwrdLogo.eps +lib/vmd/scripts/tk8.5/images/pwrdLogo100.gif +lib/vmd/scripts/tk8.5/images/pwrdLogo150.gif +lib/vmd/scripts/tk8.5/images/pwrdLogo175.gif +lib/vmd/scripts/tk8.5/images/pwrdLogo200.gif +lib/vmd/scripts/tk8.5/images/pwrdLogo75.gif +lib/vmd/scripts/tk8.5/images/tai-ku.gif +lib/vmd/scripts/tk8.5/listbox.tcl +lib/vmd/scripts/tk8.5/menu.tcl +lib/vmd/scripts/tk8.5/mkpsenc.tcl +lib/vmd/scripts/tk8.5/msgbox.tcl +lib/vmd/scripts/tk8.5/msgs/cs.msg +lib/vmd/scripts/tk8.5/msgs/da.msg +lib/vmd/scripts/tk8.5/msgs/de.msg +lib/vmd/scripts/tk8.5/msgs/el.msg +lib/vmd/scripts/tk8.5/msgs/en.msg +lib/vmd/scripts/tk8.5/msgs/en_gb.msg +lib/vmd/scripts/tk8.5/msgs/eo.msg +lib/vmd/scripts/tk8.5/msgs/es.msg +lib/vmd/scripts/tk8.5/msgs/fr.msg +lib/vmd/scripts/tk8.5/msgs/hu.msg +lib/vmd/scripts/tk8.5/msgs/it.msg +lib/vmd/scripts/tk8.5/msgs/nl.msg +lib/vmd/scripts/tk8.5/msgs/pl.msg +lib/vmd/scripts/tk8.5/msgs/pt.msg +lib/vmd/scripts/tk8.5/msgs/ru.msg +lib/vmd/scripts/tk8.5/msgs/sv.msg +lib/vmd/scripts/tk8.5/obsolete.tcl +lib/vmd/scripts/tk8.5/optMenu.tcl +lib/vmd/scripts/tk8.5/palette.tcl +lib/vmd/scripts/tk8.5/panedwindow.tcl +lib/vmd/scripts/tk8.5/prolog.ps +lib/vmd/scripts/tk8.5/safetk.tcl +lib/vmd/scripts/tk8.5/scale.tcl +lib/vmd/scripts/tk8.5/scrlbar.tcl +lib/vmd/scripts/tk8.5/spinbox.tcl +lib/vmd/scripts/tk8.5/tclIndex +lib/vmd/scripts/tk8.5/tearoff.tcl +lib/vmd/scripts/tk8.5/text.tcl +lib/vmd/scripts/tk8.5/tk.tcl +lib/vmd/scripts/tk8.5/tkAppInit.c +lib/vmd/scripts/tk8.5/tkfbox.tcl +lib/vmd/scripts/tk8.5/ttk/altTheme.tcl +lib/vmd/scripts/tk8.5/ttk/aquaTheme.tcl +lib/vmd/scripts/tk8.5/ttk/button.tcl +lib/vmd/scripts/tk8.5/ttk/clamTheme.tcl +lib/vmd/scripts/tk8.5/ttk/classicTheme.tcl +lib/vmd/scripts/tk8.5/ttk/combobox.tcl +lib/vmd/scripts/tk8.5/ttk/cursors.tcl +lib/vmd/scripts/tk8.5/ttk/defaults.tcl +lib/vmd/scripts/tk8.5/ttk/entry.tcl +lib/vmd/scripts/tk8.5/ttk/fonts.tcl +lib/vmd/scripts/tk8.5/ttk/menubutton.tcl +lib/vmd/scripts/tk8.5/ttk/notebook.tcl +lib/vmd/scripts/tk8.5/ttk/panedwindow.tcl +lib/vmd/scripts/tk8.5/ttk/progress.tcl +lib/vmd/scripts/tk8.5/ttk/scale.tcl +lib/vmd/scripts/tk8.5/ttk/scrollbar.tcl +lib/vmd/scripts/tk8.5/ttk/sizegrip.tcl +lib/vmd/scripts/tk8.5/ttk/treeview.tcl +lib/vmd/scripts/tk8.5/ttk/ttk.tcl +lib/vmd/scripts/tk8.5/ttk/utils.tcl +lib/vmd/scripts/tk8.5/ttk/winTheme.tcl +lib/vmd/scripts/tk8.5/ttk/xpTheme.tcl +lib/vmd/scripts/tk8.5/unsupported.tcl +lib/vmd/scripts/tk8.5/xmfbox.tcl lib/vmd/scripts/vmd/CVS/Entries lib/vmd/scripts/vmd/CVS/Repository lib/vmd/scripts/vmd/CVS/Root lib/vmd/scripts/vmd/README.chemical2vmd lib/vmd/scripts/vmd/atomselect.tcl -lib/vmd/scripts/vmd/atomselmacros.tcl +lib/vmd/scripts/vmd/atomselmacros.dat lib/vmd/scripts/vmd/biocore.tcl lib/vmd/scripts/vmd/chemical2vmd lib/vmd/scripts/vmd/colordefs.dat lib/vmd/scripts/vmd/draw.tcl lib/vmd/scripts/vmd/graphlabels.tcl lib/vmd/scripts/vmd/hotkeys.tcl +lib/vmd/scripts/vmd/loadplugins.tcl lib/vmd/scripts/vmd/logfile.tcl +lib/vmd/scripts/vmd/materials.dat lib/vmd/scripts/vmd/openURL.tcl lib/vmd/scripts/vmd/restypes.dat lib/vmd/scripts/vmd/save_state.tcl @@ -404,57 +1032,142 @@ lib/vmd/surf_%%VMD_ARCH%% lib/vmd/tachyon_%%VMD_ARCH%% lib/vmd/vmd_%%VMD_ARCH%% -@dirrm lib/vmd/shaders/CVS -@dirrm lib/vmd/shaders -@dirrm lib/vmd/scripts/vmd/CVS -@dirrm lib/vmd/scripts/vmd -@dirrm lib/vmd/scripts/tk8.4/msgs -@dirrm lib/vmd/scripts/tk8.4/images -@dirrm lib/vmd/scripts/tk8.4/demos/images -@dirrm lib/vmd/scripts/tk8.4/demos -@dirrm lib/vmd/scripts/tk8.4 -@dirrm lib/vmd/scripts/tcl8.4/tcltest2.2 -@dirrm lib/vmd/scripts/tcl8.4/opt0.4 -@dirrm lib/vmd/scripts/tcl8.4/msgcat1.3 -@dirrm lib/vmd/scripts/tcl8.4/http2.4 -@dirrm lib/vmd/scripts/tcl8.4/http1.0 -@dirrm lib/vmd/scripts/tcl8.4/encoding -@dirrm lib/vmd/scripts/tcl8.4 -@dirrm lib/vmd/scripts/python -@dirrm lib/vmd/scripts/CVS -@dirrm lib/vmd/scripts -@dirrm lib/vmd/plugins/noarch/tcl/zoomseq1.0 -@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs/CVS -@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/docs -@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/CVS -@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3 -@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.0 -@dirrm lib/vmd/plugins/noarch/tcl/vmdmovie1.2 -@dirrm lib/vmd/plugins/noarch/tcl/viewmaster2.1 -@dirrm lib/vmd/plugins/noarch/tcl/timeline1.0 -@dirrm lib/vmd/plugins/noarch/tcl/solvate1.2 -@dirrm lib/vmd/plugins/noarch/tcl/rmsd1.0 -@dirrm lib/vmd/plugins/noarch/tcl/ramaplot1.0 -@dirrm lib/vmd/plugins/noarch/tcl/pdbtool1.0 -@dirrm lib/vmd/plugins/noarch/tcl/navigate1.0 -@dirrm lib/vmd/plugins/noarch/tcl/membrane1.0 -@dirrm lib/vmd/plugins/noarch/tcl/imdmenu1.0 -@dirrm lib/vmd/plugins/noarch/tcl/exectool1.0 -@dirrm lib/vmd/plugins/noarch/tcl/contactmap1.1 +lib/vmd/vmd_completion.dat + +@dirrm lib/vmd/doc +@dirrm lib/vmd/plugins/%%VMD_ARCH%%/molfile +@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/hesstrans1.0 +@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl +@dirrm lib/vmd/plugins/%%VMD_ARCH%% +@dirrm lib/vmd/plugins/LINUX/tcl/intersurf1.1/bin +@dirrm lib/vmd/plugins/LINUX/tcl/intersurf1.1 +@dirrm lib/vmd/plugins/LINUX/tcl +@dirrm lib/vmd/plugins/LINUX +@dirrm lib/vmd/plugins/WIN32/tcl/intersurf1.1/bin +@dirrm lib/vmd/plugins/WIN32/tcl/intersurf1.1 +@dirrm lib/vmd/plugins/WIN32/tcl +@dirrm lib/vmd/plugins/WIN32 +@dirrm lib/vmd/plugins/include +@dirrm lib/vmd/plugins/noarch/tcl/apbsrun1.3 +@dirrm lib/vmd/plugins/noarch/tcl/atomedit1.0 +@dirrm lib/vmd/plugins/noarch/tcl/autoimd1.6 +@dirrm lib/vmd/plugins/noarch/tcl/autoionize1.2 +@dirrm lib/vmd/plugins/noarch/tcl/bignum1.0 +@dirrm lib/vmd/plugins/noarch/tcl/biocore1.1 +@dirrm lib/vmd/plugins/noarch/tcl/blast1.1 +@dirrm lib/vmd/plugins/noarch/tcl/cgtools1.0 @dirrm lib/vmd/plugins/noarch/tcl/cliptool1.0 -@dirrm lib/vmd/plugins/noarch/tcl/autoionize1.1 -@dirrm lib/vmd/plugins/noarch/tcl/autoimd1.4 -@dirrm lib/vmd/plugins/noarch/tcl/apbsrun1.0 +@dirrm lib/vmd/plugins/noarch/tcl/clonerep1.1 +@dirrm lib/vmd/plugins/noarch/tcl/colorscalebar1.2 +@dirrm lib/vmd/plugins/noarch/tcl/contactmap1.1 +@dirrm lib/vmd/plugins/noarch/tcl/dataimport1.0 +@dirrm lib/vmd/plugins/noarch/tcl/demomaster1.0 +@dirrm lib/vmd/plugins/noarch/tcl/dipwatch1.2 +@dirrm lib/vmd/plugins/noarch/tcl/dowser1.0 +@dirrm lib/vmd/plugins/noarch/tcl/exectool1.2 +@dirrm lib/vmd/plugins/noarch/tcl/extendedpdb1.0 +@dirrm lib/vmd/plugins/noarch/tcl/gofrgui1.1 +@dirrm lib/vmd/plugins/noarch/tcl/hbonds1.1 +@dirrm lib/vmd/plugins/noarch/tcl/idatm0.1 +@dirrm lib/vmd/plugins/noarch/tcl/ilstools1.2 +@dirrm lib/vmd/plugins/noarch/tcl/imdmenu1.0 +@dirrm lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials/CVS +@dirrm lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1/materials +@dirrm lib/vmd/plugins/noarch/tcl/inorganicbuilder0.1 +@dirrm lib/vmd/plugins/noarch/tcl/irspecgui1.1 +@dirrm lib/vmd/plugins/noarch/tcl/membrane1.0 +@dirrm lib/vmd/plugins/noarch/tcl/mergestructs1.0 +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/CVS +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids/CVS +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/amino_acids +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol/CVS +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/basemol +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments/CVS +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/fragments +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids/CVS +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib/nucleic_acids +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1/lib +@dirrm lib/vmd/plugins/noarch/tcl/molefacture1.1 +@dirrm lib/vmd/plugins/noarch/tcl/moltoptools0.1 +@dirrm lib/vmd/plugins/noarch/tcl/multimolanim1.0 +@dirrm lib/vmd/plugins/noarch/tcl/multiplot1.4 +@dirrm lib/vmd/plugins/noarch/tcl/multiseq2.1 +@dirrm lib/vmd/plugins/noarch/tcl/multiseqdialog1.1 +@dirrm lib/vmd/plugins/noarch/tcl/multitext1.0 +@dirrm lib/vmd/plugins/noarch/tcl/namdenergy1.2 +@dirrm lib/vmd/plugins/noarch/tcl/namdgui1.2 +@dirrm lib/vmd/plugins/noarch/tcl/namdplot1.0 +@dirrm lib/vmd/plugins/noarch/tcl/namdserver1.1 +@dirrm lib/vmd/plugins/noarch/tcl/nanotube1.0 +@dirrm lib/vmd/plugins/noarch/tcl/navfly1.0 +@dirrm lib/vmd/plugins/noarch/tcl/navigate1.0 +@dirrm lib/vmd/plugins/noarch/tcl/optimization1.0 +@dirrm lib/vmd/plugins/noarch/tcl/palettetool1.0 +@dirrm lib/vmd/plugins/noarch/tcl/paratool1.4 +@dirrm lib/vmd/plugins/noarch/tcl/pbctools2.5 +@dirrm lib/vmd/plugins/noarch/tcl/pdbtool1.0 +@dirrm lib/vmd/plugins/noarch/tcl/phylotree1.1 +@dirrm lib/vmd/plugins/noarch/tcl/psipred1.1 +@dirrm lib/vmd/plugins/noarch/tcl/qmtool1.1 +@dirrm lib/vmd/plugins/noarch/tcl/ramaplot1.1 +@dirrm lib/vmd/plugins/noarch/tcl/readcharmmpar1.1 +@dirrm lib/vmd/plugins/noarch/tcl/readcharmmtop1.0 +@dirrm lib/vmd/plugins/noarch/tcl/resptool1.1 +@dirrm lib/vmd/plugins/noarch/tcl/rmsd1.0 +@dirrm lib/vmd/plugins/noarch/tcl/rmsdtt2.0 +@dirrm lib/vmd/plugins/noarch/tcl/rnaview1.0 +@dirrm lib/vmd/plugins/noarch/tcl/ruler1.0 +@dirrm lib/vmd/plugins/noarch/tcl/runante0.1 +@dirrm lib/vmd/plugins/noarch/tcl/saltbr1.0 +@dirrm lib/vmd/plugins/noarch/tcl/seqdata1.1 +@dirrm lib/vmd/plugins/noarch/tcl/seqedit1.1/blosum +@dirrm lib/vmd/plugins/noarch/tcl/seqedit1.1 +@dirrm lib/vmd/plugins/noarch/tcl/solvate1.3 +@dirrm lib/vmd/plugins/noarch/tcl/ssrestraints1.0 +@dirrm lib/vmd/plugins/noarch/tcl/stingtool1.0 +@dirrm lib/vmd/plugins/noarch/tcl/symmetrytool1.2 +@dirrm lib/vmd/plugins/noarch/tcl/timeline2.0 +@dirrm lib/vmd/plugins/noarch/tcl/topotools1.0 +@dirrm lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/non_charmm +@dirrm lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar/stream +@dirrm lib/vmd/plugins/noarch/tcl/trunctraj1.5/toppar +@dirrm lib/vmd/plugins/noarch/tcl/trunctraj1.5 +@dirrm lib/vmd/plugins/noarch/tcl/utilities1.0 +@dirrm lib/vmd/plugins/noarch/tcl/vdna2.0 +@dirrm lib/vmd/plugins/noarch/tcl/viewmaster2.2 +@dirrm lib/vmd/plugins/noarch/tcl/vmdmovie1.7 +@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/CVS +@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs/CVS +@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3/docs +@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.1/tkcon-2.3 +@dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.1 +@dirrm lib/vmd/plugins/noarch/tcl/volmapgui1.1 +@dirrm lib/vmd/plugins/noarch/tcl/zoomseq1.1 @dirrm lib/vmd/plugins/noarch/tcl @dirrm lib/vmd/plugins/noarch -@dirrm lib/vmd/plugins/include -@dirrm lib/vmd/plugins/%%VMD_ARCH%%/bin/catdcd4.0 -@dirrm lib/vmd/plugins/%%VMD_ARCH%%/bin -@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.3 -@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0 -@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl -@dirrm lib/vmd/plugins/%%VMD_ARCH%%/molfile -@dirrm lib/vmd/plugins/%%VMD_ARCH%% @dirrm lib/vmd/plugins -@dirrm lib/vmd/doc +@dirrm lib/vmd/scripts/CVS +@dirrm lib/vmd/scripts/python +@dirrm lib/vmd/scripts/tcl8.5/encoding +@dirrm lib/vmd/scripts/tcl8.5/http1.0 +@dirrm lib/vmd/scripts/tcl8.5/msgs +@dirrm lib/vmd/scripts/tcl8.5/opt0.4 +@exec mkdir -p %D/lib/vmd/scripts/tcl8/8.3 +@dirrm lib/vmd/scripts/tcl8/8.3 +@dirrm lib/vmd/scripts/tcl8/8.4/platform +@dirrm lib/vmd/scripts/tcl8/8.4 +@dirrm lib/vmd/scripts/tcl8/8.5 +@dirrm lib/vmd/scripts/tcl8 +@dirrm lib/vmd/scripts/tcl8.5 +@dirrm lib/vmd/scripts/tk8.5/demos/images +@dirrm lib/vmd/scripts/tk8.5/demos +@dirrm lib/vmd/scripts/tk8.5/images +@dirrm lib/vmd/scripts/tk8.5/msgs +@dirrm lib/vmd/scripts/tk8.5/ttk +@dirrm lib/vmd/scripts/tk8.5 +@dirrm lib/vmd/scripts/vmd/CVS +@dirrm lib/vmd/scripts/vmd +@dirrm lib/vmd/scripts +@dirrm lib/vmd/shaders/CVS +@dirrm lib/vmd/shaders @dirrm lib/vmd >Release-Note: >Audit-Trail: >Unformatted:
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201001090523.o095NIbG012335>