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Date: Mon, 7 May 2001 11:53:15 +0200 (SAST)
From: johann@egenetics.com
To: FreeBSD-gnats-submit@freebsd.org
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Subject: ports/27176: Port update: biology/fasta3 (MAINTAINER)
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>Number:         27176
>Category:       ports
>Synopsis:       Port update: biology/fasta3 (MAINTAINER)
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Mon May 07 03:00:01 PDT 2001
>Closed-Date:
>Last-Modified:
>Originator:     Johann Visagie
>Release:        FreeBSD 5.0-CURRENT i386
>Organization:
Electric Genetics
>Environment:
>Description:
- Updata biology/fasta3 to version 33.t08.d4
>How-To-Repeat:
>Fix:
diff -ruN fasta3.bak/Makefile fasta3/Makefile
--- fasta3.bak/Makefile	Mon May  7 11:51:51 2001
+++ fasta3/Makefile	Mon May  7 11:28:00 2001
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	fasta3
-PORTVERSION=	33.t08.d3
+PORTVERSION=	33.t08.d4
 CATEGORIES=	biology
 MASTER_SITES=	http://ftp.virginia.edu/pub/fasta/
 DISTNAME=	fasta${PORTVERSION:S/.//g}
diff -ruN fasta3.bak/distinfo fasta3/distinfo
--- fasta3.bak/distinfo	Mon May  7 11:51:51 2001
+++ fasta3/distinfo	Mon May  7 11:29:34 2001
@@ -1 +1 @@
-MD5 (fasta33t08d3.shar.Z) = 4fc71c3f7f4f8f42c3e6fb9899bf29ae
+MD5 (fasta33t08d4.shar.Z) = 66f0c4731a6ff1cf123067c6ec46e352
diff -ruN fasta3.bak/files/patch-Makefile fasta3/files/patch-Makefile
--- fasta3.bak/files/patch-Makefile	Mon May  7 11:51:51 2001
+++ fasta3/files/patch-Makefile	Mon May  7 11:40:59 2001
@@ -1,5 +1,5 @@
---- Makefile.orig	Mon Jan 29 13:44:28 2001
-+++ Makefile	Mon Jan 29 14:08:43 2001
+--- Makefile.orig	Mon May  7 11:36:23 2001
++++ Makefile	Mon May  7 11:40:36 2001
 @@ -12,13 +12,13 @@
  
  # use -DBIG_LIB64 to generate 64-bit offsets in map_db .xin files
@@ -11,8 +11,8 @@
  #CC= gcc -g -Wall
  #
  # standard line for normal searching
--CFLAGS= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN
-+CFLAGS+= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN
+-CFLAGS= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN -DUSE_MMAP
++CFLAGS+= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN -DUSE_MMAP
  # -I/usr/local/include/mysql -DMYSQL_DB 
  #(for mySQL databases)  (also requires change to Makefile33.common)
  
@@ -30,7 +30,7 @@
 +#THR_SUBS = pthr_subs
 +#THR_LIBS = -threads
 +#THR_CC =
-+
++#
  #for Sun
  #THR_SUBS = uthr_subs
  #THR_LIBS = -lthread
@@ -43,7 +43,7 @@
  
  # renamed (fasta33)  programs
 -include Makefile33.common
-+# include Makefile33.common
++#include Makefile33.common
  # conventional (fasta3) names
 -#include Makefile.common
 +include Makefile.common
>Release-Note:
>Audit-Trail:
>Unformatted:

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