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Date:      Sun, 2 Feb 2020 08:17:45 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv7-default][biology/pbcopper] Failed for pbcopper-0.4.1_4 in build
Message-ID:  <202002020817.0128HjOg075173@beefy12.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports@FreeBSD.org
Last committer: jbeich@FreeBSD.org
Ident:          $FreeBSD: head/biology/pbcopper/Makefile 519824 2019-12-11 17:53:48Z jbeich $
Log URL:        http://beefy12.nyi.freebsd.org/data/head-armv7-default/p524747_s357356/logs/pbcopper-0.4.1_4.log
Build URL:      http://beefy12.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p524747_s357356
Log:

=>> Building biology/pbcopper
build started at Sun Feb  2 08:15:43 UTC 2020
port directory: /usr/ports/biology/pbcopper
package name: pbcopper-0.4.1_4
building for: FreeBSD head-armv7-default-job-13 13.0-CURRENT FreeBSD 13.0-CURRENT 1300076 arm
maintained by: ports@FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/pbcopper/Makefile 519824 2019-12-11 17:53:48Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300076
Jail OSVERSION: 1300076
Job Id: 13

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UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
ports@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix /usr/local  --mandir man  --infodir share/info --buildtype release  --strip  _build
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  HOME=/wrkdirs/usr/ports/biology/pbcopper/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pbcopper/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pbcopper/work  HOME=/wrkdirs/usr/ports/biology/pbcopper/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pbcopper/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/pbcopper/work/stage LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  
 -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pbcopper"  EXAMPLESDIR="share/examples/pbcopper"  DATADIR="share/pbcopper"  WWWDIR="www/pbcopper"  ETCDIR="etc/pbcopper"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/pbcopper DOCSDIR=/usr/local/share/doc/pbcopper EXAMPLESDIR=/usr/local/share/examples/pbcopper  WWWDIR=/usr/local/www/pbcopper ETCDIR=/usr/local/etc/pbcopper
--End SUB_LIST--

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.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv7
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 9.0.1 (git@github.com:llvm/llvm-project.git c1a0a213378a458fbea1a5c77b315c7dce08fd05) (based on LLVM 9.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=FreeBSD clang version 9.0.1 (git@github.com:llvm/llvm-project.git c1a0a213378a458fbea1a5c77b315c7dce08fd05) (based on LLVM 9.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=yes
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CC_OUTPUT_9d218390_380987f7=yes
CC_OUTPUT_9d218390_160933ec=yes
CC_OUTPUT_9d218390_fb62803b=yes
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ARCH=armv7
OPSYS=FreeBSD
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OSREL=13.0
OSVERSION=1300076
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CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
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OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
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RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
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FLEX=/nxb-bin/usr/bin/flex
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--Resource limits--
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file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
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core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
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open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
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pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>   NOTICE:

The pbcopper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   pbcopper-0.4.1_4 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0_1.txz
[head-armv7-default-job-13] Installing pkg-1.12.0_1...
[head-armv7-default-job-13] Extracting pkg-1.12.0_1: .......... done
===>   pbcopper-0.4.1_4 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of pbcopper-0.4.1_4
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>   NOTICE:

The pbcopper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_4 for building
===========================================================================
=======================<phase: checksum       >============================
===>   NOTICE:

The pbcopper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_4 for building
=> SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>   NOTICE:

The pbcopper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_4 for building
===>  Extracting for pbcopper-0.4.1_4
=> SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for pbcopper-0.4.1_4
===>  Applying FreeBSD patches for pbcopper-0.4.1_4
===========================================================================
=======================<phase: build-depends  >============================
===>   pbcopper-0.4.1_4 depends on executable: meson - not found
===>   Installing existing package /packages/All/meson-0.53.0.txz
[head-armv7-default-job-13] Installing meson-0.53.0...
[head-armv7-default-job-13] `-- Installing ninja-1.9.0,2...
[head-armv7-default-job-13] |   `-- Installing python37-3.7.6...
[head-armv7-default-job-13] |   | `-- Installing gettext-runtime-0.20.1...
[head-armv7-default-job-13] |   |   `-- Installing indexinfo-0.3.1...
[head-armv7-default-job-13] |   |   `-- Extracting indexinfo-0.3.1: .... done
[head-armv7-default-job-13] |   | `-- Extracting gettext-runtime-0.20.1: .......... done
[head-armv7-default-job-13] |   | `-- Installing libffi-3.2.1_3...
[head-armv7-default-job-13] |   | `-- Extracting libffi-3.2.1_3: .......... done
[head-armv7-default-job-13] |   | `-- Installing readline-8.0.1...
[head-armv7-default-job-13] |   | `-- Extracting readline-8.0.1: .......... done
[head-armv7-default-job-13] |   `-- Extracting python37-3.7.6: .......... done
[head-armv7-default-job-13] `-- Extracting ninja-1.9.0,2: ......... done
[head-armv7-default-job-13] `-- Installing py37-setuptools-44.0.0...
[head-armv7-default-job-13] `-- Extracting py37-setuptools-44.0.0: .......... done
[head-armv7-default-job-13] Extracting meson-0.53.0: .......... done
=====
Message from python37-3.7.6:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py37-gdbm       databases/py-gdbm@py37
py37-sqlite3    databases/py-sqlite3@py37
py37-tkinter    x11-toolkits/py-tkinter@py37
===>   pbcopper-0.4.1_4 depends on executable: meson - found
===>   Returning to build of pbcopper-0.4.1_4
===>   pbcopper-0.4.1_4 depends on executable: ninja - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   pbcopper-0.4.1_4 depends on shared library: libboost_regex.so - not found
===>   Installing existing package /packages/All/boost-libs-1.72.0.txz
[head-armv7-default-job-13] Installing boost-libs-1.72.0...
[head-armv7-default-job-13] `-- Installing icu-65.1,1...
[head-armv7-default-job-13] `-- Extracting icu-65.1,1: .......... done
[head-armv7-default-job-13] Extracting boost-libs-1.72.0: .......... done
=====
Message from boost-libs-1.72.0:

--
You have built the Boost library with thread support.

Don't forget to add -pthread to your linker options when
linking your code.
===>   pbcopper-0.4.1_4 depends on shared library: libboost_regex.so - found (/usr/local/lib/libboost_regex.so)
===>   Returning to build of pbcopper-0.4.1_4
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for pbcopper-0.4.1_4
The Meson build system
Version: 0.53.0
Source dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1
Build dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/_build
Build type: native build
Project name: pbcopper
Project version: 0.4.1
Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include '
Appending LDFLAGS from environment: ['-fstack-protector-strong']
Appending CPPFLAGS from environment: '-isystem /usr/local/include'
Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include '
Appending LDFLAGS from environment: ['-fstack-protector-strong']
Appending CPPFLAGS from environment: '-isystem /usr/local/include'
C++ compiler for the host machine: /nxb-bin/usr/bin/c++ (clang 9.0.1 "FreeBSD clang version 9.0.1 (git@github.com:llvm/llvm-project.git c1a0a213378a458fbea1a5c77b315c7dce08fd05) (based on LLVM 9.0.1)")
C++ linker for the host machine: /nxb-bin/usr/bin/c++ lld 9.0.1
Host machine cpu family: arm
Host machine cpu: armv7
Compiler for C++ supports arguments -Wduplicated-cond: NO 
Compiler for C++ supports arguments -Wduplicated-branches: NO 
Compiler for C++ supports arguments -Wlogical-op: NO 
Compiler for C++ supports arguments -Wrestrict: NO 
Compiler for C++ supports arguments -Wnull-dereference: YES 
Compiler for C++ supports arguments -Wuseless-cast: NO 
Compiler for C++ supports arguments -Wdouble-promotion: YES 
Compiler for C++ supports arguments -Wshadow: YES 
Compiler for C++ supports arguments -Wformat=1: NO 
Run-time dependency threads found: YES
Run-time dependency Boost found: YES 1.72
Configuring PbcopperVersion.cpp using configuration
Build targets in project: 3

Found ninja-1.9.0 at /usr/local/bin/ninja
===========================================================================
=======================<phase: build          >============================
===>  Building for pbcopper-0.4.1_4
[1/22] /usr/local/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 0.4.1 /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility @COPPER_GIT_SHA1@ '(.*)' /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility/git describe --always '--dirty=*'
[2/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -c src/utility/PbcopperGitHash.cpp
[3/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -c ../src/cli/CLI.cpp
[4/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -c ../src/cli/HelpPrinter.cpp
[5/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -c ../src/cli/Interface.cpp
[6/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -c ../src/cli/Option.cpp
[7/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -c ../src/cli/Parser.cpp
[8/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -c ../src/cli/Results.cpp
[9/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -c ../src/cli/VersionPrinter.cpp
[10/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -c ../src/cli/toolcontract/JsonPrinter.cpp
[11/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -c ../src/cli/toolcontract/ResolvedToolContract.cpp
[12/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -c ../src/data/Cigar.cpp
[13/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -c ../src/data/CigarOperation.cpp
[14/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -c ../src/data/MovieName.cpp
[15/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -c ../src/data/RSMovieName.cpp
[16/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -c ../src/logging/Logging.cpp
[17/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' -c ../src/utility/CallbackTimer.cpp
[18/22] /nxb-bin/usr/bin/c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -c src/utility/PbcopperVersion.cpp
[19/22] /nxb-bin/usr/bin/c++  -o src/libpbcopper.so.0.4.1 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' 'src/25a6634@@pbcopper@sha/utility_CallbackTimer.cpp.o' 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -Wl,--as-needed -
 Wl,--no-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.0.4.1 -Wl,--end-group -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -pthread
[20/22] /usr/local/bin/meson --internal symbolextractor src/libpbcopper.so.0.4.1 'src/25a6634@@pbcopper@sha/libpbcopper.so.0.4.1.symbols' 
[21/22] /nxb-bin/usr/bin/c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c ../examples/cli_demo/main.cpp
FAILED: examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o 
/nxb-bin/usr/bin/c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c ../examples/cli_demo/main.cpp
In file included from ../examples/cli_demo/main.cpp:2:
In file included from ../include/pbcopper/cli/CLI.h:12:
In file included from ../include/pbcopper/cli/Interface.h:11:
In file included from ../include/pbcopper/cli/Option.h:14:
In file included from ../include/pbcopper/json/JSON.h:7:
./include/pbcopper/json/internal/json.hpp:1229:9: error: static_assert failed due to requirement 'sizeof(nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>) == 0' "could not find from_json() method in T's namespace"
        static_assert(sizeof(BasicJsonType) == 0,
        ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~
./include/pbcopper/json/internal/json.hpp:1244:16: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::call<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        return call(j, val, priority_tag<1> {});
               ^
./include/pbcopper/json/internal/json.hpp:10801:9: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::operator()<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        ::nlohmann::from_json(std::forward<BasicJsonType>(j), val);
        ^
./include/pbcopper/json/internal/json.hpp:13329:36: note: in instantiation of function template specialization 'nlohmann::adl_serializer<std::__1::basic_string_view<char, std::__1::char_traits<char> >, void>::from_json<const nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer> &, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
        JSONSerializer<ValueType>::from_json(*this, ret);
                                   ^
./include/pbcopper/json/internal/json.hpp:13591:16: note: in instantiation of function template specialization 'nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>::get<std::__1::basic_string_view<char, std::__1::char_traits<char> >, std::__1::basic_string_view<char, std::__1::char_traits<char> >, 0>' requested here
        return get<ValueType>();
               ^
/usr/include/c++/v1/string:887:29: note: in instantiation of function template specialization 'nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>::operator basic_string_view<std::__1::basic_string_view<char, std::__1::char_traits<char> >, 0>' requested here
        {__self_view __sv = __t; return assign(__sv);}
                            ^
./examples/cli_demo/main.cpp:82:15: note: in instantiation of function template specialization 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::operator=<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long long, unsigned long long, double, std::allocator, adl_serializer>, void>' requested here
    s.tempDir = args["temp_dir"];
              ^
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/pbcopper



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