Date: Fri, 10 Apr 2015 15:39:01 +0000 (UTC) From: Brad Davis <brd@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r383736 - head/biology/paml Message-ID: <201504101539.t3AFd11k061262@svn.freebsd.org>
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Author: brd Date: Fri Apr 10 15:39:01 2015 New Revision: 383736 URL: https://svnweb.freebsd.org/changeset/ports/383736 Log: Update biology/paml to 4.8a and unbreak. PR: 199264 Submitted by: Joseph Mingrone <jrm@ftfl.ca> Approved by: bdrewery (mentor) Modified: head/biology/paml/Makefile head/biology/paml/distinfo Modified: head/biology/paml/Makefile ============================================================================== --- head/biology/paml/Makefile Fri Apr 10 15:23:04 2015 (r383735) +++ head/biology/paml/Makefile Fri Apr 10 15:39:01 2015 (r383736) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= paml -PORTVERSION= 4.8 +PORTVERSION= 4.8a CATEGORIES= biology MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/ DISTNAME= ${PORTNAME}${PORTVERSION} @@ -10,10 +10,8 @@ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= jrm@ftfl.ca COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) -BROKEN= Unfetchable - USES= gmake tar:tgz -WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION}/src +WRKSRC= ${WRKDIR}/${PORTNAME}4.8/src MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" BINARIES= baseml basemlg chi2 codeml evolver pamp yn00 @@ -27,7 +25,7 @@ do-install: .endfor @${MKDIR} ${STAGEDIR}${DOCSDIR} .for f in ${DOC_FILES} - ${INSTALL_DATA} ${WRKDIR}/${PORTNAME}${PORTVERSION}/doc/${f} ${STAGEDIR}${DOCSDIR} + ${INSTALL_DATA} ${WRKSRC}/../doc/${f} ${STAGEDIR}${DOCSDIR} .endfor .include <bsd.port.mk> Modified: head/biology/paml/distinfo ============================================================================== --- head/biology/paml/distinfo Fri Apr 10 15:23:04 2015 (r383735) +++ head/biology/paml/distinfo Fri Apr 10 15:39:01 2015 (r383736) @@ -1,2 +1,2 @@ -SHA256 (paml4.8.tgz) = 67498283308824cd5a3986db382bec275432e817f6719b8faf99fa2509f32781 -SIZE (paml4.8.tgz) = 4835110 +SHA256 (paml4.8a.tgz) = e45f37e1cfc1c24de276266a7bc2926fc12eac9602c56c1c025bc8f6dfb737f3 +SIZE (paml4.8a.tgz) = 5879158
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