Date: Sat, 24 Feb 2018 06:02:52 GMT From: pkg-fallout@FreeBSD.org To: tota@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][math/R-cran-recipes] Failed for R-cran-recipes-0.1.0 in stage Message-ID: <201802240602.w1O62qZr077600@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Last committer: tota@FreeBSD.org Ident: $FreeBSD: head/math/R-cran-recipes/Makefile 449574 2017-09-10 14:19:58Z tota $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p462764_s329886/logs/R-cran-recipes-0.1.0.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p462764_s329886 Log: =>> Building math/R-cran-recipes build started at Sat Feb 24 06:01:48 UTC 2018 port directory: /usr/ports/math/R-cran-recipes package name: R-cran-recipes-0.1.0 building for: FreeBSD head-amd64-default-job-09 12.0-CURRENT FreeBSD 12.0-CURRENT 1200058 amd64 maintained by: tota@FreeBSD.org Makefile ident: $FreeBSD: head/math/R-cran-recipes/Makefile 449574 2017-09-10 14:19:58Z tota $ Poudriere version: 3.2.4-56-g0fd5b0e3 Host OSVERSION: 1200054 Jail OSVERSION: 1200058 Job Id: 09 !!! Jail is newer than host. (Jail: 1200058, Host: 1200054) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200058 UNAME_v=FreeBSD 12.0-CURRENT 1200058 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.4-56-g0fd5b0e3 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-recipes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-recipes/work HOME=/wrkdirs/usr/ports/math/R-cran-recipes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-recipes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-recipes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-recipes/work HOME=/wrkdirs/usr/ports/math/R-cran-recipes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-recipes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" R_MOD_DIR=lib/R/library/recipes OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/recipes" EXAMPLESDIR="share/examples/recipes" DATADIR="share/recipes" WWWDIR="www/recipes" ETCDIR="etc/recipes" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/recipes DOCSDIR=/usr/local/share/doc/recipes EXAMPLESDIR=/usr/local/share/examples/recipes WWWDIR=/usr/local/www/recipes ETCDIR=/usr/local/etc/recipes --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=amd64 CONFIGURE_MAX_CMD_LEN=262144 HAVE_COMPAT_IA32_KERN=YES OPSYS=FreeBSD OSREL=12.0 OSVERSION=1200058 PYTHONBASE=/usr/local UID=0 _OSRELEASE=12.0-CURRENT #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-recipes-0.1.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5.txz [head-amd64-default-job-09] Installing pkg-1.10.5... [head-amd64-default-job-09] Extracting pkg-1.10.5: .......... done ===> R-cran-recipes-0.1.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-recipes-0.1.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-recipes-0.1.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-recipes-0.1.0 for building => SHA256 Checksum OK for recipes_0.1.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-recipes-0.1.0 for building ===> Extracting for R-cran-recipes-0.1.0 => SHA256 Checksum OK for recipes_0.1.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-recipes-0.1.0 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-recipes-0.1.0 depends on package: R-cran-dplyr>0 - not found ===> Installing existing package /packages/All/R-cran-dplyr-0.7.4.txz [head-amd64-default-job-09] Installing R-cran-dplyr-0.7.4... [head-amd64-default-job-09] `-- Installing R-3.4.3_1... [head-amd64-default-job-09] | `-- Installing cairo-1.14.8_1,2... [head-amd64-default-job-09] | | `-- Installing dri2proto-2.8... [head-amd64-default-job-09] | | `-- Extracting dri2proto-2.8: .... done [head-amd64-default-job-09] | | `-- Installing fontconfig-2.12.1,1... [head-amd64-default-job-09] | | `-- Installing expat-2.2.5... [head-amd64-default-job-09] | | `-- Extracting expat-2.2.5: .......... done [head-amd64-default-job-09] | | `-- Installing freetype2-2.8_1... [head-amd64-default-job-09] | | `-- Extracting freetype2-2.8_1: .......... done [head-amd64-default-job-09] | | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [head-amd64-default-job-09] | | `-- Installing gettext-runtime-0.19.8.1_1... [head-amd64-default-job-09] | | `-- Installing indexinfo-0.3.1... [head-amd64-default-job-09] | | `-- Extracting indexinfo-0.3.1: .... done [head-amd64-default-job-09] | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [head-amd64-default-job-09] | | `-- Installing glib-2.50.3_1,1... [head-amd64-default-job-09] | | `-- Installing libffi-3.2.1_2... [head-amd64-default-job-09] | | `-- Extracting libffi-3.2.1_2: .......... done [head-amd64-default-job-09] | | `-- Installing libiconv-1.14_11... [head-amd64-default-job-09] | | `-- Extracting libiconv-1.14_11: .......... done [head-amd64-default-job-09] | | `-- Installing pcre-8.40_1... [head-amd64-default-job-09] | | `-- Extracting pcre-8.40_1: .......... done [head-amd64-default-job-09] | | `-- Installing perl5-5.24.3... [head-amd64-default-job-09] | | `-- Extracting perl5-5.24.3: .......... done <snip> ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc6-6.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-recipes-0.1.0 depends on package: R-cran-dplyr>0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-tibble>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-ipred>0 - not found ===> Installing existing package /packages/All/R-cran-ipred-0.9.6.txz [head-amd64-default-job-09] Installing R-cran-ipred-0.9.6... [head-amd64-default-job-09] `-- Installing R-cran-prodlim-1.6.1... [head-amd64-default-job-09] | `-- Installing R-cran-lava-1.5.1... [head-amd64-default-job-09] | | `-- Installing R-cran-numDeriv-2016.8.1... [head-amd64-default-job-09] | | `-- Extracting R-cran-numDeriv-2016.8.1: .......... done [head-amd64-default-job-09] | `-- Extracting R-cran-lava-1.5.1: .......... done [head-amd64-default-job-09] `-- Extracting R-cran-prodlim-1.6.1: .......... done [head-amd64-default-job-09] Extracting R-cran-ipred-0.9.6: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-ipred>0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-dimRed>=0.1.0 - not found ===> Installing existing package /packages/All/R-cran-dimRed-0.1.0.txz [head-amd64-default-job-09] Installing R-cran-dimRed-0.1.0... [head-amd64-default-job-09] `-- Installing R-cran-DRR-0.0.2... [head-amd64-default-job-09] | `-- Installing R-cran-CVST-0.2.1... [head-amd64-default-job-09] | | `-- Installing R-cran-kernlab-0.9.25... [head-amd64-default-job-09] | | `-- Extracting R-cran-kernlab-0.9.25: .......... done [head-amd64-default-job-09] | `-- Extracting R-cran-CVST-0.2.1: .......... done [head-amd64-default-job-09] `-- Extracting R-cran-DRR-0.0.2: .......... done [head-amd64-default-job-09] Extracting R-cran-dimRed-0.1.0: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-dimRed>=0.1.0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-lubridate>0 - not found ===> Installing existing package /packages/All/R-cran-lubridate-1.6.0.txz [head-amd64-default-job-09] Installing R-cran-lubridate-1.6.0... [head-amd64-default-job-09] `-- Installing R-cran-stringr-1.2.0... [head-amd64-default-job-09] | `-- Installing R-cran-stringi-1.1.5_2... [head-amd64-default-job-09] | `-- Extracting R-cran-stringi-1.1.5_2: .......... done [head-amd64-default-job-09] `-- Extracting R-cran-stringr-1.2.0: .......... done [head-amd64-default-job-09] Extracting R-cran-lubridate-1.6.0: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-lubridate>0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-timeDate>0 - not found ===> Installing existing package /packages/All/R-cran-timeDate-3042.101.txz [head-amd64-default-job-09] Installing R-cran-timeDate-3042.101... [head-amd64-default-job-09] Extracting R-cran-timeDate-3042.101: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-timeDate>0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-ddalpha>0 - not found ===> Installing existing package /packages/All/R-cran-ddalpha-1.3.1.txz [head-amd64-default-job-09] Installing R-cran-ddalpha-1.3.1... [head-amd64-default-job-09] `-- Installing R-cran-robustbase-0.92.7... [head-amd64-default-job-09] | `-- Installing R-cran-DEoptimR-1.0.8... [head-amd64-default-job-09] | `-- Extracting R-cran-DEoptimR-1.0.8: .......... done [head-amd64-default-job-09] `-- Extracting R-cran-robustbase-0.92.7: .......... done [head-amd64-default-job-09] `-- Installing R-cran-sfsmisc-1.1.1... [head-amd64-default-job-09] `-- Extracting R-cran-sfsmisc-1.1.1: .......... done [head-amd64-default-job-09] Extracting R-cran-ddalpha-1.3.1: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-ddalpha>0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-purrr>0 - not found ===> Installing existing package /packages/All/R-cran-purrr-0.2.3.txz [head-amd64-default-job-09] Installing R-cran-purrr-0.2.3... [head-amd64-default-job-09] Extracting R-cran-purrr-0.2.3: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-purrr>0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-rlang>=0.1.1 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-gower>0 - not found ===> Installing existing package /packages/All/R-cran-gower-0.1.2.txz [head-amd64-default-job-09] Installing R-cran-gower-0.1.2... [head-amd64-default-job-09] Extracting R-cran-gower-0.1.2: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-gower>0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-RcppRoll>0 - not found ===> Installing existing package /packages/All/R-cran-RcppRoll-0.2.2.txz [head-amd64-default-job-09] Installing R-cran-RcppRoll-0.2.2... [head-amd64-default-job-09] Extracting R-cran-RcppRoll-0.2.2: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-RcppRoll>0 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-tidyselect>=0.1.1 - not found ===> Installing existing package /packages/All/R-cran-tidyselect-0.2.0.txz [head-amd64-default-job-09] Installing R-cran-tidyselect-0.2.0... [head-amd64-default-job-09] Extracting R-cran-tidyselect-0.2.0: .......... done ===> R-cran-recipes-0.1.0 depends on package: R-cran-tidyselect>=0.1.1 - found ===> Returning to build of R-cran-recipes-0.1.0 ===> R-cran-recipes-0.1.0 depends on package: R-cran-magrittr>0 - found ===> R-cran-recipes-0.1.0 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-recipes-0.1.0 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-recipes-0.1.0 depends on package: R-cran-dplyr>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-tibble>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-ipred>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-dimRed>=0.1.0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-lubridate>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-timeDate>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-ddalpha>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-purrr>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-rlang>=0.1.1 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-gower>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-RcppRoll>0 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-tidyselect>=0.1.1 - found ===> R-cran-recipes-0.1.0 depends on package: R-cran-magrittr>0 - found ===> R-cran-recipes-0.1.0 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-recipes-0.1.0 ===> Generating temporary packing list * installing *source* package 'recipes' ... ** package 'recipes' successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (recipes) Floating point exception (core dumped) *** Error code 136 Stop. make: stopped in /usr/ports/math/R-cran-recipes
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