Date: Fri, 19 Oct 2018 02:03:40 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r482398 - in head/biology: . py-gtfparse Message-ID: <201810190203.w9J23e22077599@repo.freebsd.org>
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Author: yuri Date: Fri Oct 19 02:03:40 2018 New Revision: 482398 URL: https://svnweb.freebsd.org/changeset/ports/482398 Log: New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) files Added: head/biology/py-gtfparse/ head/biology/py-gtfparse/Makefile (contents, props changed) head/biology/py-gtfparse/distinfo (contents, props changed) head/biology/py-gtfparse/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Oct 19 01:01:34 2018 (r482397) +++ head/biology/Makefile Fri Oct 19 02:03:40 2018 (r482398) @@ -104,6 +104,7 @@ SUBDIR += py-biopython SUBDIR += py-bx-python SUBDIR += py-cutadapt + SUBDIR += py-gtfparse SUBDIR += py-loompy SUBDIR += py-macs2 SUBDIR += py-orange3-bioinformatics Added: head/biology/py-gtfparse/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-gtfparse/Makefile Fri Oct 19 02:03:40 2018 (r482398) @@ -0,0 +1,22 @@ +# $FreeBSD$ + +PORTNAME= gtfparse +DISTVERSION= 1.2.0 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Parsing tools for GTF (gene transfer format) files + +LICENSE= APACHE20 + +RUN_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=0.15:math/py-pandas@${PY_FLAVOR} + +USES= python +USE_PYTHON= distutils autoplist + +NO_ARCH= yes + +.include <bsd.port.mk> Added: head/biology/py-gtfparse/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-gtfparse/distinfo Fri Oct 19 02:03:40 2018 (r482398) @@ -0,0 +1,3 @@ +TIMESTAMP = 1539913049 +SHA256 (gtfparse-1.2.0.tar.gz) = 2f27aa2b87eb43d613edabf27f9c11147dc595c8683b440ac1d88e9acdb85873 +SIZE (gtfparse-1.2.0.tar.gz) = 12601 Added: head/biology/py-gtfparse/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-gtfparse/pkg-descr Fri Oct 19 02:03:40 2018 (r482398) @@ -0,0 +1,6 @@ +Tools to parse files in GTF (gene transfer format). + +GTF is a common format to exchange large portions of, or entire genotype +information. + +WWW: https://github.com/openvax/gtfparse
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