Date: Fri, 25 Sep 2015 18:33:18 +0000 (UTC) From: Ruslan Makhmatkhanov <rm@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r397847 - in head/biology: . fastx-toolkit Message-ID: <201509251833.t8PIXIko079932@repo.freebsd.org>
next in thread | raw e-mail | index | archive | help
Author: rm Date: Fri Sep 25 18:33:18 2015 New Revision: 397847 URL: https://svnweb.freebsd.org/changeset/ports/397847 Log: The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net> Added: head/biology/fastx-toolkit/ head/biology/fastx-toolkit/Makefile (contents, props changed) head/biology/fastx-toolkit/distinfo (contents, props changed) head/biology/fastx-toolkit/pkg-descr (contents, props changed) head/biology/fastx-toolkit/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Sep 25 18:31:28 2015 (r397846) +++ head/biology/Makefile Fri Sep 25 18:33:18 2015 (r397847) @@ -20,6 +20,7 @@ SUBDIR += fasta SUBDIR += fasta3 SUBDIR += fastdnaml + SUBDIR += fastx-toolkit SUBDIR += fluctuate SUBDIR += garlic SUBDIR += gff2ps Added: head/biology/fastx-toolkit/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/fastx-toolkit/Makefile Fri Sep 25 18:33:18 2015 (r397847) @@ -0,0 +1,27 @@ +# Created by: Jason Bacon <jwbacon@tds.net> +# $FreeBSD$ + +PORTNAME= fastx_toolkit +PORTVERSION= 0.0.14 +CATEGORIES= biology + +MAINTAINER= jwbacon@tds.net +COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing + +LICENSE= AGPLv3 + +LIB_DEPENDS= libgtextutils.so:${PORTSDIR}/biology/libgtextutils + +USES= autoreconf libtool perl5 pkgconfig shebangfix tar:bzip2 +USE_PERL5= run +SHEBANG_FILES= scripts/*.pl + +USE_GITHUB= yes +GH_ACCOUNT= agordon +GH_PROJECT= ${PORTNAME} + +GNU_CONFIGURE= yes + +CONFIGURE_ENV+= PKG_CONFIG_PATH=${PREFIX}/lib/pkgconfig + +.include <bsd.port.mk> Added: head/biology/fastx-toolkit/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/fastx-toolkit/distinfo Fri Sep 25 18:33:18 2015 (r397847) @@ -0,0 +1,2 @@ +SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.bz2) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa +SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.bz2) = 259576 Added: head/biology/fastx-toolkit/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/fastx-toolkit/pkg-descr Fri Sep 25 18:33:18 2015 (r397847) @@ -0,0 +1,4 @@ +The FASTX-Toolkit is a collection of command line tools for Short-Reads +FASTA/FASTQ files preprocessing. + +WWW: http://hannonlab.cshl.edu/fastx_toolkit/ Added: head/biology/fastx-toolkit/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/fastx-toolkit/pkg-plist Fri Sep 25 18:33:18 2015 (r397847) @@ -0,0 +1,23 @@ +bin/fasta_clipping_histogram.pl +bin/fasta_formatter +bin/fasta_nucleotide_changer +bin/fastq_masker +bin/fastq_quality_boxplot_graph.sh +bin/fastq_quality_converter +bin/fastq_quality_filter +bin/fastq_quality_trimmer +bin/fastq_to_fasta +bin/fastx_artifacts_filter +bin/fastx_barcode_splitter.pl +bin/fastx_clipper +bin/fastx_collapser +bin/fastx_nucleotide_distribution_graph.sh +bin/fastx_nucleotide_distribution_line_graph.sh +bin/fastx_quality_stats +bin/fastx_renamer +bin/fastx_reverse_complement +bin/fastx_trimmer +bin/fastx_uncollapser +share/aclocal/ax_c_long_long.m4 +share/aclocal/ax_cxx_compile_stdcxx_11.m4 +share/aclocal/ax_cxx_header_stdcxx_tr1.m4
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201509251833.t8PIXIko079932>