Date: Thu, 15 Dec 2005 11:18:31 -0800 From: "Michael C. Shultz" <ringworm01@gmail.com> To: freebsd-ports@freebsd.org Subject: Re: need help from a C programmer Message-ID: <200512151118.31539.ringworm01@gmail.com> In-Reply-To: <20051215191038.GH49639@iib.unsam.edu.ar> References: <20051215191038.GH49639@iib.unsam.edu.ar>
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On Thursday 15 December 2005 11:10, Fernan Aguero wrote: > Hi! > > I need help from someone with experience in C programming, > and knowledge of FreeBSD specifics. > > I'm trying to build Jim Kent=B4s BLAT on FreeBSD > http://www.soe.ucsc.edu/~kent/src/blat33Src.zip > > I've already got some progress, and a few patches, with help > from the author and UCSC staff. But I've come to an obstacle > that I (no C knowledge) can't fix. > > [ ... ] > cd hg/pslPretty && gmake > gmake[1]: Entering directory > `/scratch/fernan/ports/blat/work/blatSrc/hg/pslPret ty' > gcc34 -ggdb -o ../../bin/i386/pslPretty pslPretty.o ../../lib/i386/jkweb.a > -lm pslPretty.o: In function `prettyOutString': > pslPretty.o(.text+0x668): undefined reference to `__ctype_b_loc' > pslPretty.o: In function `pslPretty': > pslPretty.o(.text+0x116d): undefined reference to `stdout' > collect2: ld returned 1 exit status > gmake[1]: *** [pslPretty] Error 1 > > The authors also are intrigued: "stdout at least is about as > basic and common of a C symbol as you can get. It looks > like pslPretty isn't using ctype directly, but through > isalpha() which is nearly as common as stdout" > > I, can't help much, but perhaps someone in the list has some > clue as to what might be going on? > > My draft port is here > http://genoma.unsam.edu.ar/~fernan/freebsd/blat/blat.shar.gz > > And the complete output here > http://genoma.unsam.edu.ar/~fernan/freebsd/blat/blat.out.gz > > Thanks in advance, > > Fernan =46or the stdout seems like you aren't linking to libc. =2DMike
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