Date: Fri, 21 Dec 2018 15:16:43 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 112i386-default][science/pcmsolver] Failed for pcmsolver-1.2.1_3 in build Message-ID: <201812211516.wBLFGhD9082197@beefy10.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/pcmsolver/Makefile 487784 2018-12-19 06:09:26Z yuri $ Log URL: http://beefy10.nyi.freebsd.org/data/112i386-default/487820/logs/pcmsolver-1.2.1_3.log Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=112i386-default&build=487820 Log: =>> Building science/pcmsolver build started at Fri Dec 21 15:12:59 UTC 2018 port directory: /usr/ports/science/pcmsolver package name: pcmsolver-1.2.1_3 building for: FreeBSD 112i386-default-job-11 11.2-RELEASE-p7 FreeBSD 11.2-RELEASE-p7 i386 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/pcmsolver/Makefile 487784 2018-12-19 06:09:26Z yuri $ Poudriere version: 3.2.8 Host OSVERSION: 1300002 Jail OSVERSION: 1102000 Job Id: 11 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1102000 UNAME_v=FreeBSD 11.2-RELEASE-p7 UNAME_r=11.2-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/112i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/112i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=112i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/112i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/pcmsolver/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/pcmsolver/work HOME=/wrkdirs/usr/ports/science/pcmsolver/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/pcmsolver/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/pcmsolver/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/pcmsolver/work HOME=/wrkdirs/usr/ports/science/pcmsolver/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/pcmsolver/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " CPP="cpp" CPPFLA GS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pcmsolver" EXAMPLESDIR="share/examples/pcmsolver" DATADIR="share/pcmsolver" WWWDIR="www/pcmsolver" ETCDIR="etc/pcmsolver" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pcmsolver DOCSDIR=/usr/local/share/doc/pcmsolver EXAMPLESDIR=/usr/local/share/examples/pcmsolver WWWDIR=/usr/local/www/pcmsolver ETCDIR=/usr/local/etc/pcmsolver --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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[112i386-default-job-11] Extracting pkg-1.10.5_5: .......... done ===> pcmsolver-1.2.1_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of pcmsolver-1.2.1_3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user => PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/PCMSolver/pcmsolver/tar.gz/v1.2.1?dummy=/PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz fetch: https://codeload.github.com/PCMSolver/pcmsolver/tar.gz/v1.2.1?dummy=/PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz: size unknown fetch: https://codeload.github.com/PCMSolver/pcmsolver/tar.gz/v1.2.1?dummy=/PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz: size of remote file is not known PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz 0 B 0 Bps ===> Fetching all distfiles required by pcmsolver-1.2.1_3 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by pcmsolver-1.2.1_3 for building => SHA256 Checksum OK for PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by pcmsolver-1.2.1_3 for building ===> Extracting for pcmsolver-1.2.1_3 => SHA256 Checksum OK for PCMSolver-pcmsolver-v1.2.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for pcmsolver-1.2.1_3 ===> Applying FreeBSD patches for pcmsolver-1.2.1_3 =========================================================================== =======================<phase: build-depends >============================ ===> pcmsolver-1.2.1_3 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.13.1_1.txz [112i386-default-job-11] Installing cmake-3.13.1_1... [112i386-default-job-11] `-- Installing curl-7.62.0... <snip> [112i386-default-job-11] `-- Installing gmp-6.1.2_1... [112i386-default-job-11] `-- Extracting gmp-6.1.2_1: .......... done [112i386-default-job-11] `-- Installing mpc-1.1.0_2... [112i386-default-job-11] | `-- Installing mpfr-4.0.1_2... [112i386-default-job-11] | `-- Extracting mpfr-4.0.1_2: .......... done [112i386-default-job-11] `-- Extracting mpc-1.1.0_2: ......... done [112i386-default-job-11] Extracting gcc8-8.2.0_4: .......... done Message from gcc8-8.2.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> pcmsolver-1.2.1_3 depends on executable: gfortran8 - found ===> Returning to build of pcmsolver-1.2.1_3 ===> pcmsolver-1.2.1_3 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.15.txz [112i386-default-job-11] Installing python27-2.7.15... [112i386-default-job-11] `-- Installing libffi-3.2.1_3... [112i386-default-job-11] `-- Extracting libffi-3.2.1_3: .......... done [112i386-default-job-11] `-- Installing readline-7.0.5... [112i386-default-job-11] `-- Extracting readline-7.0.5: .......... done [112i386-default-job-11] Extracting python27-2.7.15: .......... done Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> pcmsolver-1.2.1_3 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of pcmsolver-1.2.1_3 ===> pcmsolver-1.2.1_3 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for pcmsolver-1.2.1_3 -- The CXX compiler identification is Clang 6.0.0 -- The C compiler identification is Clang 6.0.0 -- The Fortran compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- yes -- FCFLAGS is set to '-Wl,-rpath=/usr/local/lib/gcc8'. -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Verifying Fortran/CXX Compiler Compatibility -- Verifying Fortran/CXX Compiler Compatibility - Success -- Setting (unspecified) option ENABLE_CXX11_SUPPORT: ON -- Using C++11 standard -- Setting (unspecified) option ENABLE_GPERFTOOLS: OFF -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.15") -- Setting (unspecified) option PYMOD_INSTALL_LIBDIR: python -- Could NOT find Boost -- No libraries required, installing headers -- Eigen 3.3.2 is located here: /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/external/eigen3/include/eigen3 -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done -- Generating done -- Build files have been written to: /wrkdirs/usr/ports/science/pcmsolver/work/.build =========================================================================== =======================<phase: build >============================ ===> Building for pcmsolver-1.2.1_3 Scanning dependencies of target update_version [ 2%] Generating version info Blindly (no git) accepting release version: 1.2.1+zzzzzzz (recorded) 1.2.1 {} zzzzzzz 1.2.1.0 release 1.2.1 <-- 1.2.1+zzzzzzz [ 2%] Built target update_version Scanning dependencies of target generate-config-hpp [ 2%] Built target generate-config-hpp Scanning dependencies of target custom_boost [ 4%] Unpacking Boost [ 6%] Generating user-config.jam [ 8%] Installing Boost headers [ 10%] Clean-up Boost [ 10%] Built target custom_boost Scanning dependencies of target pcm-objlib [ 12%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/metal/metal_sphere.F90.o [ 14%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_precision.f90.o [ 16%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_dblas.f90.o [ 18%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_print.f90.o [ 20%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_symmetry.f90.o [ 22%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_dlapack.f90.o [ 24%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_utils.f90.o [ 26%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_cavity.F90.o [ 28%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/Element.cpp.o [ 30%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/GePolCavity.cpp.o [ 32%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/ICavity.cpp.o [ 34%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/RestartCavity.cpp.o [ 36%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/AnisotropicLiquid.cpp.o [ 38%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/IonicLiquid.cpp.o [ 40%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/SphericalDiffuse.cpp.o [ 42%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/UniformDielectric.cpp.o [ 44%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/Vacuum.cpp.o [ 46%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/SphericalSharp.cpp.o [ 48%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/Input.cpp.o [ 50%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/Meddle.cpp.o [ 52%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/PhysicalConstants.cpp.o [ 54%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Collocation.cpp.o [ 56%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/IBoundaryIntegralOperator.cpp.o [ 58%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Numerical.cpp.o [ 60%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Purisima.cpp.o [ 62%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_cavity_interface.F90.o [ 64%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/CPCMSolver.cpp.o [ 66%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/IEFSolver.cpp.o [ 68%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/SolverImpl.cpp.o [ 70%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Atom.cpp.o [ 72%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/ChargeDistribution.cpp.o [ 74%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Molecule.cpp.o [ 76%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/QuadratureRules.cpp.o [ 78%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Solvent.cpp.o [ 80%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Sphere.cpp.o [ 82%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Symmetry.cpp.o [ 84%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/cnpy.cpp.o [ 86%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/Getkw.cpp.o [ 88%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/GetkwError.cpp.o [ 90%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/Section.cpp.o [1m/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/utils/getkw/Section.cpp:110:5: [0m[0;1;35mwarning: [0m[1m'~Section' has a non-throwing exception specification but can still throw [-Wexceptions][0m THROW_GETKW("Error! Unknown key type!"); [0;1;32m ^ [0m[1m/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/utils/getkw/GetkwError.h:27:5: [0m[0;1;30mnote: [0mexpanded from macro 'THROW_GETKW'[0m throw GetkwError(_err); \ [0;1;32m ^ [0m[1m/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.2.1/src/utils/getkw/Section.cpp:58:10: [0m[0;1;30mnote: [0mdestructor has a implicit non-throwing exception specification[0m Section::~Section() { [0;1;32m ^ [0m1 warning generated. [ 92%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/messages.cpp.o [ 92%] Built target pcm-objlib Scanning dependencies of target pcm-static [ 94%] Linking CXX static library ../lib/libpcm.a [ 94%] Built target pcm-static Scanning dependencies of target pcm-shared [ 96%] Linking CXX shared library ../lib/libpcm.so [ 96%] Built target pcm-shared Scanning dependencies of target run_pcm [ 98%] Building CXX object src/bin/CMakeFiles/run_pcm.dir/run_pcm.cpp.o [100%] Linking CXX executable ../../bin/run_pcm //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__getf2@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__floatunditf@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__subtf3@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__multf3@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__unordtf2@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__lttf2@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__addtf3@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__gttf2@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__divtf3@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__letf2@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__cpu_model@GCC_4.8.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__netf2@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__eqtf2@GCC_4.6.0' //usr/local/lib/gcc8/libgfortran.so.5: undefined reference to `__floatsitf@GCC_4.6.0' c++: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build *** Error code 1 Stop. make: stopped in /usr/ports/science/pcmsolver
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