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Date:      Fri, 15 Feb 2019 07:52:46 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 112arm64-quarterly][science/libccp4] Failed for libccp4-6.5.1_2 in build
Message-ID:  <201902150752.x1F7qkcw055737@thunderx1.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q1/science/libccp4/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://thunderx1.nyi.freebsd.org/data/112arm64-quarterly/492889/logs/libccp4-6.5.1_2.log
Build URL:      http://thunderx1.nyi.freebsd.org/build.html?mastername=112arm64-quarterly&build=492889
Log:

=>> Building science/libccp4
build started at Fri Feb 15 07:52:08 UTC 2019
port directory: /usr/ports/science/libccp4
package name: libccp4-6.5.1_2
building for: FreeBSD 112arm64-quarterly-job-14 11.2-RELEASE-p9 FreeBSD 11.2-RELEASE-p9 1102000 arm64
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q1/science/libccp4/Makefile 487272 2018-12-12 01:35:33Z gerald $
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=======================<phase: check-sanity   >============================
===>  License GPLv3 LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   libccp4-6.5.1_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[112arm64-quarterly-job-14] Installing pkg-1.10.5_5...
[112arm64-quarterly-job-14] Extracting pkg-1.10.5_5: .......... done
===>   libccp4-6.5.1_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of libccp4-6.5.1_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 LGPL3 accepted by the user
===> Fetching all distfiles required by libccp4-6.5.1_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 LGPL3 accepted by the user
===> Fetching all distfiles required by libccp4-6.5.1_2 for building
=> SHA256 Checksum OK for libccp4-6.5.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 LGPL3 accepted by the user
===> Fetching all distfiles required by libccp4-6.5.1_2 for building
===>  Extracting for libccp4-6.5.1_2
=> SHA256 Checksum OK for libccp4-6.5.1.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for libccp4-6.5.1_2
===========================================================================
=======================<phase: build-depends  >============================
===>   libccp4-6.5.1_2 depends on executable: gfortran8 - not found
===>   Installing existing package /packages/All/gcc8-8.2.0_4.txz
[112arm64-quarterly-job-14] Installing gcc8-8.2.0_4...
[112arm64-quarterly-job-14] `-- Installing binutils-2.30_7,1...
[112arm64-quarterly-job-14] |   `-- Installing gettext-runtime-0.19.8.1_2...
[112arm64-quarterly-job-14] |   | `-- Installing indexinfo-0.3.1...
[112arm64-quarterly-job-14] |   | `-- Extracting indexinfo-0.3.1: .... done
[112arm64-quarterly-job-14] |   `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[112arm64-quarterly-job-14] `-- Extracting binutils-2.30_7,1: .......... done
[112arm64-quarterly-job-14] `-- Installing gmp-6.1.2_1...
[112arm64-quarterly-job-14] `-- Extracting gmp-6.1.2_1: .......... done
[112arm64-quarterly-job-14] `-- Installing mpc-1.1.0_2...
[112arm64-quarterly-job-14] |   `-- Installing mpfr-4.0.1_2...
[112arm64-quarterly-job-14] |   `-- Extracting mpfr-4.0.1_2: .......... done
[112arm64-quarterly-job-14] `-- Extracting mpc-1.1.0_2: ......... done
[112arm64-quarterly-job-14] Extracting gcc8-8.2.0_4: .......... done
Message from gcc8-8.2.0_4:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   libccp4-6.5.1_2 depends on executable: gfortran8 - found
===>   Returning to build of libccp4-6.5.1_2
===>   libccp4-6.5.1_2 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[112arm64-quarterly-job-14] Installing gmake-4.2.1_3...
[112arm64-quarterly-job-14] Extracting gmake-4.2.1_3: .......... done
===>   libccp4-6.5.1_2 depends on executable: gmake - found
===>   Returning to build of libccp4-6.5.1_2
===>   libccp4-6.5.1_2 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   libccp4-6.5.1_2 depends on shared library: libmmdb2.so - not found
===>   Installing existing package /packages/All/mmdb2-2.0.19.txz
[112arm64-quarterly-job-14] Installing mmdb2-2.0.19...
[112arm64-quarterly-job-14] Extracting mmdb2-2.0.19: .......... done
===>   libccp4-6.5.1_2 depends on shared library: libmmdb2.so - found (/usr/local/lib/libmmdb2.so)
===>   Returning to build of libccp4-6.5.1_2
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for libccp4-6.5.1_2
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking whether gmake supports nested variables... yes
checking for style of include used by gmake... GNU
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking dependency style of cc... gcc3
checking the archiver (/usr/local/bin/ar) interface... ar
checking build system type... aarch64-portbld-freebsd11.2
checking host system type... aarch64-portbld-freebsd11.2
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by cc... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm
checking the name lister (/usr/local/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... no
checking how to convert aarch64-portbld-freebsd11.2 file names to aarch64-portbld-freebsd11.2 format... func_convert_file_noop
checking how to convert aarch64-portbld-freebsd11.2 file names to toolchain format... func_convert_file_noop
checking for /usr/local/bin/ld option to reload object files... -r
checking for objdump... /usr/local/bin/objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... /usr/local/bin/ranlib
checking command to parse /usr/local/bin/nm output from cc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... cpp
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... yes
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd11.2 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gcc... (cached) cc
checking whether we are using the GNU C compiler... (cached) yes
checking whether cc accepts -g... (cached) yes
checking for cc option to accept ISO C89... (cached) none needed
checking whether cc understands -c and -o together... (cached) yes
checking dependency style of cc... (cached) gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for ld used by c++... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd11.2 ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran8 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran8 option to produce PIC... -fPIC
checking if gfortran8 PIC flag -fPIC works... yes
checking if gfortran8 static flag -static works... yes
checking if gfortran8 supports -c -o file.o... yes
checking if gfortran8 supports -c -o file.o... (cached) yes
checking whether the gfortran8 linker (/usr/local/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd11.2 ld.so
checking how to hardcode library paths into programs... immediate
checking for m4... /usr/bin/m4
configure: fortran/unix.m4 will be processed with m4 
checking for library containing cos... -lm
checking for MMDB_CCIF_Init in -lmmdb2... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libccp4c.pc
config.status: creating libccp4f.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
/usr/bin/sed -i.bak -e 's| -Wl,--as-needed||; s| -Wl,--no-as-needed||' /wrkdirs/usr/ports/science/libccp4/work/libccp4-6.5.1/Makefile
/usr/bin/sed -i.bak -e 's|^archive_cmds=|wl="-Wl,"; archive_cmds=|' /wrkdirs/usr/ports/science/libccp4/work/libccp4-6.5.1/libtool # wl is missing otherwise for some reason
===========================================================================
=======================<phase: build          >============================
===>  Building for libccp4-6.5.1_2
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/libccp4/work/libccp4-6.5.1'
m4  fortran/unix.m4 > fortran/unix.f
gmake  all-am
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libccp4/work/libccp4-6.5.1'
depbase=`echo ccp4/ccp4_array.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I.   -isystem /usr/local/include  -O2 -pipe  -fPIC -isystem /usr/local/include -fno-strict-aliasing  -MT ccp4/ccp4_array.lo -MD -MP -MF $depbase.Tpo -c -o ccp4/ccp4_array.lo ccp4/ccp4_array.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fPIC -isystem /usr/local/include -fno-strict-aliasing -MT ccp4/ccp4_array.lo -MD -MP -MF ccp4/.deps/ccp4_array.Tpo -c ccp4/ccp4_array.c  -fPIC -DPIC -o ccp4/.libs/ccp4_array.o
depbase=`echo ccp4/cmap_data.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ./libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I.   -isystem /usr/local/include  -O2 -pipe  -fPIC -isystem /usr/local/include -fno-strict-aliasing  -MT ccp4/cmap_data.lo -MD -MP -MF $depbase.Tpo -c -o ccp4/cmap_data.lo ccp4/cmap_data.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fPIC -isystem /usr/local/include -fno-strict-aliasing -MT ccp4/cmap_data.lo -MD -MP -MF ccp4/.deps/cmap_data.Tpo -c ccp4/cmap_data.c  -fPIC -DPIC -o ccp4/.libs/cmap_data.o
In file included from ccp4/cmap_data.c:22:
In file included from ccp4/cmaplib.h:58:
In file included from ccp4/ccp4_utils.h:29:
In file included from ccp4/ccp4_types.h:22:
ccp4/ccp4_sysdep.h:244:4: error: "Can't determine machine number format"
#  error "Can't determine machine number format"
   ^
1 error generated.
gmake[2]: *** [Makefile:739: ccp4/cmap_data.lo] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libccp4/work/libccp4-6.5.1'
gmake[1]: *** [Makefile:491: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/libccp4/work/libccp4-6.5.1'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/libccp4



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