Date: Fri, 10 May 2019 21:04:43 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r501199 - head/biology/stacks Message-ID: <201905102104.x4AL4h8L025905@repo.freebsd.org>
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Author: jwb Date: Fri May 10 21:04:43 2019 New Revision: 501199 URL: https://svnweb.freebsd.org/changeset/ports/501199 Log: biology/stacks: Upgrade to 2.4 Improve check to avoid outdated GCC on 2nd tier platforms Reported by: portscout Modified: head/biology/stacks/Makefile head/biology/stacks/distinfo head/biology/stacks/pkg-plist Modified: head/biology/stacks/Makefile ============================================================================== --- head/biology/stacks/Makefile Fri May 10 20:33:17 2019 (r501198) +++ head/biology/stacks/Makefile Fri May 10 21:04:43 2019 (r501199) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= stacks -DISTVERSION= 2.3 +DISTVERSION= 2.4 CATEGORIES= biology perl5 python MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/ @@ -21,7 +21,8 @@ LDFLAGS+= -lpthread .include <bsd.port.pre.mk> -.if ${ARCH} != amd64 && ${ARCH} != i386 +# Force newer GCC on platforms using GCC 4.2 as base +.if ${CHOSEN_COMPILER_TYPE} == gcc USE_GCC= yes .endif Modified: head/biology/stacks/distinfo ============================================================================== --- head/biology/stacks/distinfo Fri May 10 20:33:17 2019 (r501198) +++ head/biology/stacks/distinfo Fri May 10 21:04:43 2019 (r501199) @@ -1,3 +1,3 @@ -TIMESTAMP = 1547306940 -SHA256 (stacks-2.3.tar.gz) = 2a5befaf11ca2f191afcd42a3a3392290d6a116d7fe737b69a2c4d5b77f40c99 -SIZE (stacks-2.3.tar.gz) = 10962586 +TIMESTAMP = 1557519159 +SHA256 (stacks-2.4.tar.gz) = 30093d688a2dc62a19ea42a58065f024c8279419439049bcde186703e75641c1 +SIZE (stacks-2.4.tar.gz) = 10930616 Modified: head/biology/stacks/pkg-plist ============================================================================== --- head/biology/stacks/pkg-plist Fri May 10 20:33:17 2019 (r501198) +++ head/biology/stacks/pkg-plist Fri May 10 21:04:43 2019 (r501199) @@ -16,50 +16,3 @@ bin/stacks-gdb bin/stacks-integrate-alignments bin/tsv2bam bin/ustacks -%%DATADIR%%/php/CatalogClass.php -%%DATADIR%%/php/Locus.php -%%DATADIR%%/php/ajax.js -%%DATADIR%%/php/annotate.js -%%DATADIR%%/php/annotate_marker.php -%%DATADIR%%/php/catalog.php -%%DATADIR%%/php/catalog_genotypes.php -%%DATADIR%%/php/constants.php.dist -%%DATADIR%%/php/correct_genotype.php -%%DATADIR%%/php/correct_genotypes.php -%%DATADIR%%/php/db_functions.php -%%DATADIR%%/php/export.js -%%DATADIR%%/php/export_batch.php -%%DATADIR%%/php/fst_view.php -%%DATADIR%%/php/hapstat_view.php -%%DATADIR%%/php/header.php -%%DATADIR%%/php/images/caret-d.png -%%DATADIR%%/php/images/caret-u.png -%%DATADIR%%/php/images/excel_icon.png -%%DATADIR%%/php/images/l-arrow-disabled.png -%%DATADIR%%/php/images/l-arrow.png -%%DATADIR%%/php/images/r-arrow-disabled.png -%%DATADIR%%/php/images/r-arrow.png -%%DATADIR%%/php/images/stacks_bg.png -%%DATADIR%%/php/images/stacks_logo_rev_small.png -%%DATADIR%%/php/index.php -%%DATADIR%%/php/last_modified.php -%%DATADIR%%/php/phist_view.php -%%DATADIR%%/php/pop_view.php -%%DATADIR%%/php/population_view.js -%%DATADIR%%/php/samples.php -%%DATADIR%%/php/sequence_blast.php -%%DATADIR%%/php/stack_view.php -%%DATADIR%%/php/stacks.css -%%DATADIR%%/php/stacks.js -%%DATADIR%%/php/stacks_functions.php -%%DATADIR%%/php/sumstat_view.php -%%DATADIR%%/php/tag.php -%%DATADIR%%/php/tags.php -%%DATADIR%%/php/version.php -%%DATADIR%%/php/view_sequence.php -%%DATADIR%%/sql/catalog_index.sql -%%DATADIR%%/sql/chr_index.sql -%%DATADIR%%/sql/mysql.cnf.dist -%%DATADIR%%/sql/stacks.sql -%%DATADIR%%/sql/tag_index.sql -@dir %%DATADIR%%/php/export
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