Date: Sun, 17 Sep 2017 01:45:27 GMT From: pkg-fallout@FreeBSD.org To: thierry@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 103amd64-default][science/gnudatalanguage] Failed for gnudatalanguage-0.9.7_8 in build Message-ID: <201709170145.v8H1jRZg068321@beefy6.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: thierry@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/science/gnudatalanguage/Makefile 449591 2017-09-10 20:55:38Z gerald $ Log URL: http://beefy6.nyi.freebsd.org/data/103amd64-default/449977/logs/gnudatalanguage-0.9.7_8.log Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=103amd64-default&build=449977 Log: ====>> Building science/gnudatalanguage build started at Sun Sep 17 01:26:08 UTC 2017 port directory: /usr/ports/science/gnudatalanguage building for: FreeBSD 103amd64-default-job-06 10.3-RELEASE-p21 FreeBSD 10.3-RELEASE-p21 amd64 maintained by: thierry@FreeBSD.org Makefile ident: $FreeBSD: head/science/gnudatalanguage/Makefile 449591 2017-09-10 20:55:38Z gerald $ Poudriere version: 3.1.19-63-g681eaae7 Host OSVERSION: 1200040 Jail OSVERSION: 1003000 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1003000 UNAME_v=FreeBSD 10.3-RELEASE-p21 UNAME_r=10.3-RELEASE-p21 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/103amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=gnudatalanguage-0.9.7_8 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/103amd64-default/ref/.p/pool MASTERNAME=103amd64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-63-g681eaae7 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gnudatalanguage-0.9.7_8: EIGEN=on: Eigen3 support (boost performance) EXAMPLES=on: Build and/or install examples FFTW=on: Discrete Fourier Transform support GRAPHICSMAGICK=on: Support GraphicsMagick GRIB=on: Support GRIB messages HDF5=on: HDF-5 data format support LIBPROJ4=on: Support cartographic processes MPICH2=off: Parallel processing support via MPICH2 NETCDF=on: NetCDF data format support PYTHON=on: Python bindings or support QHULL=off: Enable Qhull support UDUNITS=on: Unidata units library (udunits) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh WX_CONFIG=/usr/local/bin/wxgtk2u-3.0-config --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DESTDIR=/wrkdirs/usr/ports/science/gnudatalanguage/work/stage WX_CONFIG=/usr/local/bin/wxgtk2u-3.0-config PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc6" CFLAGS="-O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing" CPP="cpp6" CPPFLAGS="-O2 -pipe -fstack-protector -Wl,-rpath=/usr/l ocal/lib/gcc6 -fno-strict-aliasing -fno-inline -DNPY_NO_DEPRECATED_API -DNPY_1_7_API_VERSION" LDFLAGS=" -lpthread -L/usr/local/lib -L/wrkdirs/usr/ports/science/gnudatalanguage/work -fstack-protector -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6" LIBS="" CXX="g++6" CXXFLAGS="-O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -nostdinc++ -isystem /usr/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc6" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/gnudatalanguage" EXAMPLESDIR="share/examples/gnudatalanguage" DATADIR="share/gnudatalanguage" WWWDIR="www/gnudatalanguage" ETCDIR="etc/gnudatalanguage" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gnudatalanguage DOCSDIR=/usr/local/share/doc/gnudatalanguage EXAMPLESDIR=/usr/local/share/examples/gnudatalanguage WWWDIR=/usr/local/www/gnudatalanguage ETCDIR=/usr/local/etc/gnudatalanguage --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=amd64 CONFIGURE_MAX_CMD_LEN=262144 HAVE_COMPAT_IA32_KERN=YES OPSYS=FreeBSD OSREL=10.3 OSVERSION=1003000 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=10.3-RELEASE-p21 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited sbsize (bytes, -b) unlimited pseudo-terminals (-p) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> gnudatalanguage-0.9.7_8 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [103amd64-default-job-06] Installing pkg-1.10.1... [103amd64-default-job-06] Extracting pkg-1.10.1: .......... done ===> gnudatalanguage-0.9.7_8 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gnudatalanguage-0.9.7_8 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by gnudatalanguage-0.9.7_8 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by gnudatalanguage-0.9.7_8 for building => SHA256 Checksum OK for gdl-0.9.7.tgz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by gnudatalanguage-0.9.7_8 for building ===> Extracting for gnudatalanguage-0.9.7_8 => SHA256 Checksum OK for gdl-0.9.7.tgz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for gnudatalanguage-0.9.7_8 ===> Converting DOS text files to UNIX text files ===> Applying FreeBSD patches for gnudatalanguage-0.9.7_8 =========================================================================== =======================<phase: build-depends >============================ ===> gnudatalanguage-0.9.7_8 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.4.txz [103amd64-default-job-06] Installing eigen-3.3.4... [103amd64-default-job-06] Extracting eigen-3.3.4: .......... done ===> gnudatalanguage-0.9.7_8 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found <snip> [8/163] /usr/local/bin/g++6 -DHAVE_CONFIG_H -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.7/src -I/usr/local/include -I/usr/local/include/GraphicsMagick -I/usr/local/lib/wx/include/gtk2-unicode-3.0 -I/usr/local/include/wx-3.0 -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.7 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.7/src/antlr -I. -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -nostdinc++ -isystem /usr/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc6 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing -nostdinc++ -isystem /usr/include/c++/v1 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/usr/local/lib/libsz.so -lz -lm /usr/local/lib/libfftw3.so /usr/local/lib/libfftw3f.so /usr/local/lib/libproj.so /usr/local/lib/libpython2.7.so /usr/local/lib/libudunits2.so -lps /usr/local/lib/libgrib_api.so /usr/local/lib/libSM.so /usr/local/lib/libICE.so /usr/local/lib/libX11.so /usr/local/lib/libXext.so /usr/local/lib/libpng.so /usr/local/lib/libgsl.so /usr/local/lib/libgslcblas.so /usr/local/lib/libplplot.so /usr/local/lib/libplplotcxx.so /usr/local/lib/libGraphicsMagick.so /usr/local/lib/libGraphicsMagick++.so -lwx_baseu-3.0 -lwx_gtk2u_core-3.0 -lwx_gtk2u_adv-3.0 -lnetcdf /usr/local/lib/libhdf5.so /usr/local/lib/libsz.so -lm /usr/local/lib/libfftw3.so /usr/local/lib/libfftw3f.so /usr/local/lib/libproj.so /usr/local/lib/libpython2.7.so /usr/local/lib/libudunits2.so -lps /usr/local/lib/libgrib_api.so /usr/local/lib/libSM.so /usr/local/lib/libICE.so /usr/local/lib/libX11.so /usr/local/lib/libXext.so && : src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_decinc_dot_expr(ProgNode*, int)': GDLInterpreter.cpp:(.text+0x4720): undefined reference to `operator delete(void*, unsigned long)' GDLInterpreter.cpp:(.text+0x4a31): undefined reference to `operator delete(void*, unsigned long)' src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_arrayexpr_mfcall_as_arrayexpr(ProgNode*, BaseGDL*)': GDLInterpreter.cpp:(.text+0x4ca8): undefined reference to `operator delete(void*, unsigned long)' GDLInterpreter.cpp:(.text+0x4eff): undefined reference to `operator delete(void*, unsigned long)' src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_arrayexpr_mfcall(ProgNode*, BaseGDL*)': GDLInterpreter.cpp:(.text+0x5297): undefined reference to `operator delete(void*, unsigned long)' src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o:GDLInterpreter.cpp:(.text._ZN5antlr15CharInputBufferD0Ev[_ZN5antlr15CharInputBufferD5Ev]+0x5c): more undefined references to `operator delete(void*, unsigned long)' follow src/CMakeFiles/gdl.dir/basic_fun.cpp.o: In function `ForInfoListT<ForLoopInfoT, 32ull>::resize(unsigned long long)': basic_fun.cpp:(.text._ZN12ForInfoListTI12ForLoopInfoTLy32EE6resizeEy[_ZN12ForInfoListTI12ForLoopInfoTLy32EE6resizeEy]+0x1ba): undefined reference to `operator delete[](void*, unsigned long)' src/CMakeFiles/gdl.dir/datatypes.cpp.o: In function `Data_<SpDByte>::OFmtCal(std::__1::basic_ostream<char, std::__1::char_traits<char> >*, unsigned long long, unsigned long long, int, int, char*, BaseGDL::Cal_IOMode)': datatypes.cpp:(.text._ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE[_ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE]+0x163): undefined reference to `operator delete(void*, unsigned long)' datatypes.cpp:(.text._ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE[_ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE]+0x174): undefined reference to `operator delete(void*, unsigned long)' datatypes.cpp:(.text._ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE[_ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE]+0x185): undefined reference to `operator delete(void*, unsigned long)' datatypes.cpp:(.text._ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE[_ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE]+0x196): undefined reference to `operator delete(void*, unsigned long)' datatypes.cpp:(.text._ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE[_ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE]+0x1a7): undefined reference to `operator delete(void*, unsigned long)' src/CMakeFiles/gdl.dir/datatypes.cpp.o:datatypes.cpp:(.text._ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE[_ZN5Data_I7SpDByteE7OFmtCalEPNSt3__113basic_ostreamIcNS2_11char_traitsIcEEEEyyiiPcN7BaseGDL10Cal_IOModeE]+0x1b8): more undefined references to `operator delete(void*, unsigned long)' follow src/CMakeFiles/gdl.dir/envt.cpp.o: In function `ForInfoListT<ForLoopInfoT, 32ull>::~ForInfoListT()': envt.cpp:(.text._ZN12ForInfoListTI12ForLoopInfoTLy32EED2Ev[_ZN12ForInfoListTI12ForLoopInfoTLy32EED5Ev]+0x8a): undefined reference to `operator delete[](void*, unsigned long)' src/CMakeFiles/gdl.dir/envt.cpp.o: In function `EnvUDT::~EnvUDT()': envt.cpp:(.text._ZN6EnvUDTD2Ev[_ZN6EnvUDTD5Ev]+0xdb): undefined reference to `operator delete(void*, unsigned long)' src/CMakeFiles/gdl.dir/envt.cpp.o: In function `EnvUDT::~EnvUDT()': envt.cpp:(.text._ZN6EnvUDTD0Ev[_ZN6EnvUDTD5Ev]+0xdb): undefined reference to `operator delete(void*, unsigned long)' src/CMakeFiles/gdl.dir/extrat.cpp.o: In function `ExtraT::ResolveExtra(EnvBaseT*)': extrat.cpp:(.text+0x1688): undefined reference to `operator delete(void*, unsigned long)' src/CMakeFiles/gdl.dir/gdlexception.cpp.o: In function `WarnAboutObsoleteRoutine(antlr::ASTRefCount<DNode>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)': gdlexception.cpp:(.text+0x1d22): undefined reference to `operator delete(void*, unsigned long)' gdlexception.cpp:(.text+0x1f2c): undefined reference to `operator delete(void*, unsigned long)' src/CMakeFiles/gdl.dir/basic_pro.cpp.o:basic_pro.cpp:(.text+0x33a6): more undefined references to `operator delete(void*, unsigned long)' follow collect2: error: ld returned 1 exit status ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/gnudatalanguage
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