Date: Fri, 24 Jul 2020 07:08:00 +0000 (UTC) From: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r543010 - in head/biology: . rubygem-bio-executables Message-ID: <202007240708.06O780Dn041574@repo.freebsd.org>
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Author: sunpoet Date: Fri Jul 24 07:08:00 2020 New Revision: 543010 URL: https://svnweb.freebsd.org/changeset/ports/543010 Log: Add rubygem-bio-executables 1.0.0 bio-executables is a collection of miscellaneous utilities for bioinformatics that were formerly part of the BioRuby core ("bio" gem). Because of reducing complexity, they were moved to this gem. This code has historically been part of the BioRuby gem, but has been split into its own gem as part of an effort to modularize BioRuby. bio-executables and many more plugins are available at biogems.info. WWW: https://github.com/bioruby/bioruby-executables Added: head/biology/rubygem-bio-executables/ head/biology/rubygem-bio-executables/Makefile (contents, props changed) head/biology/rubygem-bio-executables/distinfo (contents, props changed) head/biology/rubygem-bio-executables/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Jul 24 07:07:54 2020 (r543009) +++ head/biology/Makefile Fri Jul 24 07:08:00 2020 (r543010) @@ -148,6 +148,7 @@ SUBDIR += recombine SUBDIR += ruby-bio SUBDIR += rubygem-bio + SUBDIR += rubygem-bio-executables SUBDIR += samtools SUBDIR += scrm SUBDIR += seaview Added: head/biology/rubygem-bio-executables/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-executables/Makefile Fri Jul 24 07:08:00 2020 (r543010) @@ -0,0 +1,30 @@ +# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org> +# $FreeBSD$ + +PORTNAME= bio-executables +PORTVERSION= 1.0.0 +CATEGORIES= biology rubygems +MASTER_SITES= RG + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Collection of miscellaneous utilities for bioinformatics + +LICENSE= BSD2CLAUSE RUBY +LICENSE_COMB= dual +LICENSE_FILE_BSD2CLAUSE=${WRKSRC}/BSDL +LICENSE_FILE_RUBY= ${WRKSRC}/COPYING + +RUN_DEPENDS= rubygem-bio>=2.0.0:biology/rubygem-bio \ + rubygem-bio-old-biofetch-emulator>=0.0.1:biology/rubygem-bio-old-biofetch-emulator + +USES= gem +USE_RUBY= yes + +NO_ARCH= yes + +PLIST_FILES= bin/br_biofetch.rb \ + bin/br_bioflat.rb \ + bin/br_biogetseq.rb \ + bin/br_pmfetch.rb + +.include <bsd.port.mk> Added: head/biology/rubygem-bio-executables/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-executables/distinfo Fri Jul 24 07:08:00 2020 (r543010) @@ -0,0 +1,3 @@ +TIMESTAMP = 1595416507 +SHA256 (rubygem/bio-executables-1.0.0.gem) = 29f02115bc543d7f39b0c6d4c518719dcae9d112a913c215b988b599a6736b91 +SIZE (rubygem/bio-executables-1.0.0.gem) = 15360 Added: head/biology/rubygem-bio-executables/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-executables/pkg-descr Fri Jul 24 07:08:00 2020 (r543010) @@ -0,0 +1,9 @@ +bio-executables is a collection of miscellaneous utilities for bioinformatics +that were formerly part of the BioRuby core ("bio" gem). Because of reducing +complexity, they were moved to this gem. + +This code has historically been part of the BioRuby gem, but has been split into +its own gem as part of an effort to modularize BioRuby. bio-executables and many +more plugins are available at biogems.info. + +WWW: https://github.com/bioruby/bioruby-executables
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