Date: Fri, 11 Jun 2021 15:05:36 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 495634f580bd - main - biology/biolibc: Update to 0.1.3 Message-ID: <202106111505.15BF5aa2089808@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=495634f580bdb5bf7020c53ef98d348ad682bb86 commit 495634f580bdb5bf7020c53ef98d348ad682bb86 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-06-11 14:53:49 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-06-11 15:05:18 +0000 biology/biolibc: Update to 0.1.3 Changes: https://github.com/auerlab/biolibc/releases --- biology/biolibc/Makefile | 13 ++++++++++++- biology/biolibc/distinfo | 6 +++--- biology/biolibc/pkg-plist | 32 +++++++++++++++++++++++++++----- 3 files changed, 42 insertions(+), 9 deletions(-) diff --git a/biology/biolibc/Makefile b/biology/biolibc/Makefile index dfe7d0a7c32b..9c039b8f1c79 100644 --- a/biology/biolibc/Makefile +++ b/biology/biolibc/Makefile @@ -1,5 +1,7 @@ +# Created by: J. Bacon <jwb@FreeBSD.org> + PORTNAME= biolibc -DISTVERSION= 0.1.1 +DISTVERSION= 0.1.3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -8,7 +10,16 @@ COMMENT= Low-level high-performance bioinformatics library LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +LIB_DEPENDS= libxtend.so:devel/libxtend + USE_GITHUB= yes +USE_LDCONFIG= yes + GH_ACCOUNT= auerlab +INSTALL_TARGET= install-strip + +pre-build: + (cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend) + .include <bsd.port.mk> diff --git a/biology/biolibc/distinfo b/biology/biolibc/distinfo index 353580791bed..2efe35731481 100644 --- a/biology/biolibc/distinfo +++ b/biology/biolibc/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616330997 -SHA256 (auerlab-biolibc-0.1.1_GH0.tar.gz) = 0b4a5a63a17998423a583e05e6244369b0c7195c09d2c1c25f1bcde45d7d6388 -SIZE (auerlab-biolibc-0.1.1_GH0.tar.gz) = 11770 +TIMESTAMP = 1623416887 +SHA256 (auerlab-biolibc-0.1.3_GH0.tar.gz) = 746a85a0e5ce9523fb0811cdbb36b4a4c8033190a2deb7e6b7b2566c12769ab7 +SIZE (auerlab-biolibc-0.1.3_GH0.tar.gz) = 30046 diff --git a/biology/biolibc/pkg-plist b/biology/biolibc/pkg-plist index ce0fa3da78f3..5e508df38c26 100644 --- a/biology/biolibc/pkg-plist +++ b/biology/biolibc/pkg-plist @@ -1,6 +1,28 @@ -include/biostring.h -include/dsvio.h -include/samio.h -include/vcfio.h +include/biolibc/bed.h +include/biolibc/biolibc.h +include/biolibc/dsv.h +include/biolibc/gff.h +include/biolibc/plist.h +include/biolibc/sam-buff.h +include/biolibc/sam.h +include/biolibc/vcf.h lib/libbiolibc.a -man/man1/biolibc.1.gz +lib/libbiolibc.so +lib/libbiolibc.so.2 +lib/libbiolibc.so.2.0 +man/man3/bed_check_order.3.gz +man/man3/bed_gff_cmp.3.gz +man/man3/bed_read_feature.3.gz +man/man3/bed_set_chromosome.3.gz +man/man3/bed_set_end_pos.3.gz +man/man3/bed_set_fields.3.gz +man/man3/bed_set_name.3.gz +man/man3/bed_set_rgb_str.3.gz +man/man3/bed_set_score.3.gz +man/man3/bed_set_start_pos.3.gz +man/man3/bed_set_strand.3.gz +man/man3/bed_set_thick_end_pos.3.gz +man/man3/bed_set_thick_start_pos.3.gz +man/man3/bed_skip_header.3.gz +man/man3/bed_write_feature.3.gz +man/man3/biolibc.3.gz
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