From owner-dev-commits-ports-all@freebsd.org Fri Jun 11 15:05:39 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 3734D660590; Fri, 11 Jun 2021 15:05:39 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4G1kg70yBYz3htX; Fri, 11 Jun 2021 15:05:39 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 09C8224E38; Fri, 11 Jun 2021 15:05:39 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 15BF5cNT089859; Fri, 11 Jun 2021 15:05:38 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 15BF5c9x089858; Fri, 11 Jun 2021 15:05:38 GMT (envelope-from git) Date: Fri, 11 Jun 2021 15:05:38 GMT Message-Id: <202106111505.15BF5c9x089858@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 2d3f4b8c5484 - main - biology/vcf2hap: Update to 0.1.3 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2d3f4b8c54845e82ce500cdca0386bc5c1aa7e8b Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 11 Jun 2021 15:05:39 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=2d3f4b8c54845e82ce500cdca0386bc5c1aa7e8b commit 2d3f4b8c54845e82ce500cdca0386bc5c1aa7e8b Author: Jason W. Bacon AuthorDate: 2021-06-11 14:58:16 +0000 Commit: Jason W. Bacon CommitDate: 2021-06-11 15:05:19 +0000 biology/vcf2hap: Update to 0.1.3 Updates for new biolibc API Changes: https://github.com/auerlab/vcf2hap/releases --- biology/vcf2hap/Makefile | 6 ++++-- biology/vcf2hap/distinfo | 6 +++--- biology/vcf2hap/pkg-descr | 6 ++++-- 3 files changed, 11 insertions(+), 7 deletions(-) diff --git a/biology/vcf2hap/Makefile b/biology/vcf2hap/Makefile index ea753f4a5b81..fff9fac575ac 100644 --- a/biology/vcf2hap/Makefile +++ b/biology/vcf2hap/Makefile @@ -1,5 +1,7 @@ +# Created by: Jason Bacon + PORTNAME= vcf2hap -DISTVERSION= 0.1.2 +DISTVERSION= 0.1.3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -8,7 +10,7 @@ COMMENT= Generate .hap file from VCF for haplohseq LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= biolibc>=0.1.1:biology/biolibc +LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend USE_GITHUB= yes GH_ACCOUNT= auerlab diff --git a/biology/vcf2hap/distinfo b/biology/vcf2hap/distinfo index 7b288bf922c7..7c1a21153744 100644 --- a/biology/vcf2hap/distinfo +++ b/biology/vcf2hap/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616515046 -SHA256 (auerlab-vcf2hap-0.1.2_GH0.tar.gz) = 69804e605bdf646582cbc33bb2839387da5cb2e8a3f83a8a03b5a464d01348f1 -SIZE (auerlab-vcf2hap-0.1.2_GH0.tar.gz) = 197782 +TIMESTAMP = 1623421319 +SHA256 (auerlab-vcf2hap-0.1.3_GH0.tar.gz) = 6b6174c610fcf623f95d573e54f9007360bea3d7723c25cb624517b14bc11368 +SIZE (auerlab-vcf2hap-0.1.3_GH0.tar.gz) = 198981 diff --git a/biology/vcf2hap/pkg-descr b/biology/vcf2hap/pkg-descr index 540a5393a487..ef51e068d975 100644 --- a/biology/vcf2hap/pkg-descr +++ b/biology/vcf2hap/pkg-descr @@ -1,5 +1,7 @@ vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file -is required by haplohseq. vcf2hap is extremely fast and requires a trivial -amount of memory regardless of the size of the VCF file. +is required by haplohseq. + +vcf2hap is extremely fast and requires a trivial amount of memory regardless of +the size of the VCF file. WWW: https://github.com/auerlab/vcf2hap