Date: Fri, 17 Feb 2006 14:15:35 -0600 (CST) From: Jason Bacon <bacon@smithers.neuro.mcw.edu> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/93495: New port: MINC 2 Message-ID: <200602172015.k1HKFZmv027241@smithers.neuro.mcw.edu> Resent-Message-ID: <200602172020.k1HKK8r9047693@freefall.freebsd.org>
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>Number: 93495 >Category: ports >Synopsis: New port: MINC 2 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Fri Feb 17 20:20:08 GMT 2006 >Closed-Date: >Last-Modified: >Originator: Jason Bacon >Release: FreeBSD 5.4-RELEASE i386 >Organization: Medical College of Wisconsin >Environment: System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005 bacon@clone.neuro.mcw.edu:/usr/obj/usr/src/sys/clone i386 >Description: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # science/minc2 # science/minc2/pkg-descr # science/minc2/distinfo # science/minc2/pkg-message # science/minc2/pkg-plist # science/minc2/Makefile # echo c - science/minc2 mkdir -p science/minc2 > /dev/null 2>&1 echo x - science/minc2/pkg-descr sed 's/^X//' >science/minc2/pkg-descr << 'END-of-science/minc2/pkg-descr' XMINC (Medical Imaging NetCDF) is a medical imaging data format and an Xassociated set of tools and libraries. MINC was created in 1993 by Peter XNeelin at the McConnell Brain Imaging Centre of the Montreal Neurological XInstitute. Many others have contributed to the design and implementation XMINC over the years. X XWWW: http://www.bic.mni.mcgill.ca/software/minc/ X XPort maintainer: Jason W. Bacon X bacon@smithers.neuro.mcw.edu END-of-science/minc2/pkg-descr echo x - science/minc2/distinfo sed 's/^X//' >science/minc2/distinfo << 'END-of-science/minc2/distinfo' XMD5 (minc-2.0.09.tar.gz) = 8a8606163852f91d6dc66dbcc3fde4ee XSHA256 (minc-2.0.09.tar.gz) = b55907a5dd26c1b98b39f6cb81133336d7c794d4f7d4ad38b02561a9cc489390 XSIZE (minc-2.0.09.tar.gz) = 1418085 END-of-science/minc2/distinfo echo x - science/minc2/pkg-message sed 's/^X//' >science/minc2/pkg-message << 'END-of-science/minc2/pkg-message' X============================================================================= XFor questions or comments regarding this port, please contact the Xport maintainer: bacon@smithers.neuro.mcw.edu X XFor MINC usage, please visit the MINC WEB site at X Xhttp://www.bic.mni.mcgill.ca/software/minc/ X============================================================================= END-of-science/minc2/pkg-message echo x - science/minc2/pkg-plist sed 's/^X//' >science/minc2/pkg-plist << 'END-of-science/minc2/pkg-plist' Xbin/dcm2mnc Xbin/ecattominc Xbin/invert_raw_image Xbin/minc_modify_header Xbin/mincaverage Xbin/minccalc Xbin/mincconcat Xbin/mincconvert Xbin/minccopy Xbin/mincdiff Xbin/mincdump Xbin/mincedit Xbin/mincexpand Xbin/mincextract Xbin/mincgen Xbin/mincheader Xbin/minchistory Xbin/mincinfo Xbin/minclookup Xbin/mincmakescalar Xbin/mincmakevector Xbin/mincmath Xbin/mincpik Xbin/mincresample Xbin/mincreshape Xbin/mincstats Xbin/minctoecat Xbin/minctoraw Xbin/mincview Xbin/mincwindow Xbin/mnc2nii Xbin/nii2mnc Xbin/rawtominc Xbin/transformtags Xbin/upet2mnc Xbin/voxeltoworld Xbin/worldtovoxel Xbin/xfmconcat Xbin/xfminvert Xinclude/ParseArgv.h Xinclude/minc.h Xinclude/minc2.h Xinclude/minc_compat.h Xinclude/minc_simple.h Xinclude/nd_loop.h Xinclude/time_stamp.h Xinclude/volume_io.h Xinclude/volume_io/alloc.h Xinclude/volume_io/arrays.h Xinclude/volume_io/basic.h Xinclude/volume_io/def_math.h Xinclude/volume_io/files.h Xinclude/volume_io/geom_structs.h Xinclude/volume_io/geometry.h Xinclude/volume_io/internal_volume_io.h Xinclude/volume_io/multidim.h Xinclude/volume_io/progress.h Xinclude/volume_io/string_funcs.h Xinclude/volume_io/system_dependent.h Xinclude/volume_io/transforms.h Xinclude/volume_io/vol_io_prototypes.h Xinclude/volume_io/volume.h Xinclude/volume_io/volume_cache.h Xinclude/voxel_loop.h Xlib/libminc2.a Xlib/libminc2.so Xlib/libminc2.so.2 Xlib/libvolume_io2.a Xlib/libvolume_io2.so Xlib/libvolume_io2.so.2 X@dirrm include/volume_io END-of-science/minc2/pkg-plist echo x - science/minc2/Makefile sed 's/^X//' >science/minc2/Makefile << 'END-of-science/minc2/Makefile' X############################################################################ X# New ports collection Makefile for: minc 1.x (Medical Imaging NetCDF) X# Date created: 21 Dec 2005 X# Whom: jbacon X# X# $FreeBSD$ X# X X############################################################################ X# http://www.bic.mni.mcgill.ca/software/minc/ X# is the ultimate source for MINC, and will always contain the latest X# source release. If this port is not up to date enough for you, X# you can download the latest sources and build manually. On FreeBSD, X# you must configure with the environment variable LDFLAGS set to X# ${LOCALBASE}/lib so that the configure script will find libnetcdf. X# Of course, the netcdf port must be installed first. X XPORTNAME= minc XPORTVERSION= 2.0.09 XCATEGORIES= science biology XMASTER_SITES= http://www.bic.mni.mcgill.ca/users/bert/ \ X http://www.neuro.mcw.edu/~bacon/Ports/distfiles/ X XMAINTAINER= bacon@smithers.neuro.mcw.edu XCOMMENT= Medical Imaging NetCDF X XLIB_DEPENDS= netcdf.1:${PORTSDIR}/science/netcdf \ X hdf5:${PORTSDIR}/science/hdf5 X XINSTALLS_SHLIB= yes X XUSE_AUTOTOOLS= libtool:15 X XCONFLICTS= minc-1* X X# Build parameters X#WRKSRC= ${WRKDIR}/minc-${PORTVERSION} X XMAN1= dcm2mnc.1 \ X ecattominc.1 \ X invert_raw_image.1 \ X minc_modify_header.1 \ X mincaverage.1 \ X minccalc.1 \ X mincconcat.1 \ X mincconvert.1 \ X minccopy.1 \ X mincdiff.1 \ X mincedit.1 \ X mincexpand.1 \ X mincextract.1 \ X mincgen.1 \ X mincheader.1 \ X minchistory.1 \ X mincinfo.1 \ X minclookup.1 \ X mincmakescalar.1 \ X mincmakevector.1 \ X mincmath.1 \ X mincpik.1 \ X mincresample.1 \ X mincreshape.1 \ X mincstats.1 \ X minctoecat.1 \ X minctoraw.1 \ X mincview.1 \ X mincwindow.1 \ X mnc2nii.1 \ X nii2mnc.1 \ X rawtominc.1 \ X transformtags.1 \ X upet2mnc.1 \ X voxeltoworld.1 \ X xfmconcat.1 \ X xfminvert.1 XMAN3= ParseArgv.3 X XCONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" \ X LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib -lpthread" XCONFIGURE_ARGS= --enable-shared=yes --enable-static=yes XCONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL} X Xpost-install: X ${CAT} ${PKGMESSAGE} X X.include <bsd.port.mk> END-of-science/minc2/Makefile exit >How-To-Repeat: >Fix: >Release-Note: >Audit-Trail: >Unformatted:
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