From owner-freebsd-pkg-fallout@freebsd.org Tue May 21 03:13:39 2019 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 4FDF3159FD24 for ; Tue, 21 May 2019 03:13:39 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id E1C6971926 for ; Tue, 21 May 2019 03:13:38 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 9D517159FD23; Tue, 21 May 2019 03:13:38 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 621BA159FD22 for ; Tue, 21 May 2019 03:13:38 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 0DE4F71924; Tue, 21 May 2019 03:13:38 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy5.nyi.freebsd.org (beefy5.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:e8]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id DB83527BED; Tue, 21 May 2019 03:13:37 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy5.nyi.freebsd.org (localhost [127.0.0.1]) by beefy5.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id x4L3Db0x016788; Tue, 21 May 2019 03:13:37 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy5.nyi.freebsd.org (8.15.2/8.15.2/Submit) id x4L3Dbmo016768; Tue, 21 May 2019 03:13:37 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 21 May 2019 03:13:37 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201905210313.x4L3Dbmo016768@beefy5.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - 120i386-default][biology/hhsuite] Failed for hhsuite-3.2.0 in configure Cc: pkg-fallout@FreeBSD.org X-Rspamd-Queue-Id: 0DE4F71924 X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.96 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.999,0]; NEURAL_HAM_LONG(-1.00)[-1.000,0]; NEURAL_HAM_SHORT(-0.96)[-0.962,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US] X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 21 May 2019 03:13:39 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/biology/hhsuite/Makefile 502015 2019-05-19 06:52:38Z yuri $ Log URL: http://beefy5.nyi.freebsd.org/data/120i386-default/502184/logs/hhsuite-3.2.0.log Build URL: http://beefy5.nyi.freebsd.org/build.html?mastername=120i386-default&build=502184 Log: =>> Building biology/hhsuite build started at Tue May 21 03:13:03 UTC 2019 port directory: /usr/ports/biology/hhsuite package name: hhsuite-3.2.0 building for: FreeBSD 120i386-default-job-05 12.0-RELEASE-p5 FreeBSD 12.0-RELEASE-p5 i386 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/biology/hhsuite/Makefile 502015 2019-05-19 06:52:38Z yuri $ Poudriere version: 3.2.8-4-g701d8fe1 Host OSVERSION: 1300018 Jail OSVERSION: 1200086 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p5 UNAME_r=12.0-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-4-g701d8fe1 MASTERMNT=/usr/local/poudriere/data/.m/120i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/hhsuite/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/hhsuite/work HOME=/wrkdirs/usr/ports/biology/hhsuite/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/hhsuite/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/hhsuite/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/hhsuite/work HOME=/wrkdirs/usr/ports/biology/hhsuite/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/hhsuite/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/hhsuite/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.2 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/hhsuite" EXAMPLESDIR="share/examples/hhsuite" DATADIR="share/hhsuite" WWWDIR="www/hhsuite" ETCDIR="etc/hhsuite" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hhsuite DOCSDIR=/usr/local/share/doc/hhsuite EXAMPLESDIR=/usr/local/share/examples/hhsuite WWWDIR=/usr/local/www/hhsuite ETCDIR=/usr/local/etc/hhsuite --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE-p5 OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> hhsuite-3.2.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [120i386-default-job-05] Installing pkg-1.10.5_5... [120i386-default-job-05] Extracting pkg-1.10.5_5: .......... done ===> hhsuite-3.2.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of hhsuite-3.2.0 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user => soedinglab-hh-suite-v3.2.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/soedinglab/hh-suite/tar.gz/v3.2.0?dummy=/soedinglab-hh-suite-v3.2.0_GH0.tar.gz fetch: https://codeload.github.com/soedinglab/hh-suite/tar.gz/v3.2.0?dummy=/soedinglab-hh-suite-v3.2.0_GH0.tar.gz: size unknown fetch: https://codeload.github.com/soedinglab/hh-suite/tar.gz/v3.2.0?dummy=/soedinglab-hh-suite-v3.2.0_GH0.tar.gz: size of remote file is not known soedinglab-hh-suite-v3.2.0_GH0.tar.gz 6126 kB 4173 kBps 02s ===> Fetching all distfiles required by hhsuite-3.2.0 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by hhsuite-3.2.0 for building => SHA256 Checksum OK for soedinglab-hh-suite-v3.2.0_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by hhsuite-3.2.0 for building ===> Extracting for hhsuite-3.2.0 => SHA256 Checksum OK for soedinglab-hh-suite-v3.2.0_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for hhsuite-3.2.0 ===> Applying FreeBSD patches for hhsuite-3.2.0 =========================================================================== =================================================== ===> hhsuite-3.2.0 depends on package: openmpi>0 - not found ===> Installing existing package /packages/All/openmpi-1.10.7_5.txz [120i386-default-job-05] Installing openmpi-1.10.7_5... [120i386-default-job-05] `-- Installing gcc8-8.3.0_2... [120i386-default-job-05] `-- Extracting libltdl-2.4.6: .......... done [120i386-default-job-05] `-- Installing slurm-wlm-18.08.7... [120i386-default-job-05] | `-- Installing hdf-szip-2.1.1... [120i386-default-job-05] | `-- Extracting hdf-szip-2.1.1: .......... done [120i386-default-job-05] | `-- Installing hdf5-1.10.5_1... [120i386-default-job-05] | `-- Extracting hdf5-1.10.5_1: .......... done [120i386-default-job-05] | `-- Installing json-c-0.13.1... [120i386-default-job-05] | `-- Extracting json-c-0.13.1: .......... done [120i386-default-job-05] | `-- Installing liblz4-1.9.1,1... [120i386-default-job-05] | `-- Extracting liblz4-1.9.1,1: .......... done [120i386-default-job-05] | `-- Installing libsysinfo-0.0.3_2... [120i386-default-job-05] | `-- Extracting libsysinfo-0.0.3_2: ......... done [120i386-default-job-05] | `-- Installing lua52-5.2.4... [120i386-default-job-05] | | `-- Installing libedit-3.1.20181209_2,1... [120i386-default-job-05] | | `-- Extracting libedit-3.1.20181209_2,1: .......... done [120i386-default-job-05] | `-- Extracting lua52-5.2.4: ......... done [120i386-default-job-05] | `-- Installing munge-0.5.13_1... [120i386-default-job-05] | | `-- Installing perl5-5.28.2... [120i386-default-job-05] | | `-- Extracting perl5-5.28.2: .......... done [120i386-default-job-05] | `-- Extracting munge-0.5.13_1: ......... done [120i386-default-job-05] | `-- Installing readline-8.0.0... [120i386-default-job-05] | `-- Extracting readline-8.0.0: .......... done ===> Creating groups. Creating group 'slurm' with gid '468'. ===> Creating users Creating user 'slurm' with uid '468'. [120i386-default-job-05] `-- Extracting slurm-wlm-18.08.7: .......... done [120i386-default-job-05] Extracting openmpi-1.10.7_5: .......... done Message from gcc8-8.3.0_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from perl5-5.28.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> hhsuite-3.2.0 depends on package: openmpi>0 - found ===> Returning to build of hhsuite-3.2.0 ===> hhsuite-3.2.0 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.14.4.txz [120i386-default-job-05] Installing cmake-3.14.4... [120i386-default-job-05] `-- Installing curl-7.64.1_1... [120i386-default-job-05] | `-- Installing ca_root_nss-3.44... [120i386-default-job-05] | `-- Extracting ca_root_nss-3.44: ........ done [120i386-default-job-05] | `-- Installing libnghttp2-1.38.0... [120i386-default-job-05] | `-- Extracting libnghttp2-1.38.0: .......... done [120i386-default-job-05] `-- Extracting curl-7.64.1_1: .......... done [120i386-default-job-05] `-- Installing expat-2.2.6_1... [120i386-default-job-05] `-- Extracting expat-2.2.6_1: .......... done [120i386-default-job-05] `-- Installing jsoncpp-1.8.1_6... [120i386-default-job-05] `-- Extracting jsoncpp-1.8.1_6: .......... done [120i386-default-job-05] `-- Installing libarchive-3.3.3,1... [120i386-default-job-05] | `-- Installing lzo2-2.10_1... [120i386-default-job-05] | `-- Extracting lzo2-2.10_1: .......... done [120i386-default-job-05] `-- Extracting libarchive-3.3.3,1: .......... done [120i386-default-job-05] `-- Installing libuv-1.29.0... [120i386-default-job-05] `-- Extracting libuv-1.29.0: .......... done [120i386-default-job-05] `-- Installing rhash-1.3.5... [120i386-default-job-05] `-- Extracting rhash-1.3.5: .......... done [120i386-default-job-05] Extracting cmake-3.14.4: .......... done Message from ca_root_nss-3.44: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> hhsuite-3.2.0 depends on file: /usr/local/bin/cmake - found ===> Returning to build of hhsuite-3.2.0 ===> hhsuite-3.2.0 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.9.0,2.txz [120i386-default-job-05] Installing ninja-1.9.0,2... [120i386-default-job-05] `-- Installing python36-3.6.8_2... [120i386-default-job-05] | `-- Installing libffi-3.2.1_3... [120i386-default-job-05] | `-- Extracting libffi-3.2.1_3: .......... done [120i386-default-job-05] `-- Extracting python36-3.6.8_2: .......... done [120i386-default-job-05] Extracting ninja-1.9.0,2: ......... done Message from python36-3.6.8_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== ===> hhsuite-3.2.0 depends on executable: ninja - found ===> Returning to build of hhsuite-3.2.0 ===> hhsuite-3.2.0 depends on file: /usr/local/bin/python3.6 - found ===> hhsuite-3.2.0 depends on package: perl5>=5.28.r1<5.29 - found =========================================================================== =================================================== ===> hhsuite-3.2.0 depends on shared library: libomp.so - not found ===> Installing existing package /packages/All/openmp-8.0.0_1.txz [120i386-default-job-05] Installing openmp-8.0.0_1... [120i386-default-job-05] Extracting openmp-8.0.0_1: .......... done Message from openmp-8.0.0_1: ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Part of base system since FreeBSD 11.3/12.1. It is scheduled to be removed on or after 2019-12-31. ===> hhsuite-3.2.0 depends on shared library: libomp.so - found (/usr/local/lib/libomp.so) ===> Returning to build of hhsuite-3.2.0 =========================================================================== =================================================== ===> Configuring for hhsuite-3.2.0 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build -- The C compiler identification is Clang 6.0.1 -- The CXX compiler identification is Clang 6.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for fmemopen -- Looking for fmemopen - found -- Found MPI_C: /usr/local/mpi/openmpi/lib/libmpi.so (found version "3.0") -- Found MPI_CXX: /usr/local/mpi/openmpi/lib/libmpi_cxx.so (found version "3.0") -- Found MPI: TRUE (found version "3.0") -- xxd not found, using xxdi.pl instead -- Performing Test HAVE_MM_MALLOC -- Performing Test HAVE_MM_MALLOC - Success -- Performing Test HAVE_POSIX_MEMALIGN -- Performing Test HAVE_POSIX_MEMALIGN - Success -- Performing Test HAVE_AVX2_EXTENSIONS -- Performing Test HAVE_AVX2_EXTENSIONS - Failed -- Performing Test HAVE_AVX_EXTENSIONS -- Performing Test HAVE_AVX_EXTENSIONS - Failed -- Performing Test HAVE_SSE4_2_EXTENSIONS -- Performing Test HAVE_SSE4_2_EXTENSIONS - Failed -- Performing Test HAVE_SSE4_1_EXTENSIONS -- Performing Test HAVE_SSE4_1_EXTENSIONS - Failed -- Performing Test HAVE_SSSE3_EXTENSIONS -- Performing Test HAVE_SSSE3_EXTENSIONS - Failed -- Performing Test HAVE_SSE3_EXTENSIONS -- Performing Test HAVE_SSE3_EXTENSIONS - Failed -- Performing Test HAVE_SSE2_EXTENSIONS -- Performing Test HAVE_SSE2_EXTENSIONS - Failed -- Performing Test HAVE_SSE_EXTENSIONS -- Performing Test HAVE_SSE_EXTENSIONS - Failed CMake Error at src/CMakeLists.txt:18 (message): At least SSE2 instruction set support is required! CMake will exit. -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/biology/hhsuite/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/biology/hhsuite/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/biology/hhsuite