From owner-dev-commits-ports-all@freebsd.org Sat Jun 5 18:53:16 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 46F1D648136; Sat, 5 Jun 2021 18:53:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Fy80X1Wbyz3nPp; Sat, 5 Jun 2021 18:53:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 1BA7515E44; Sat, 5 Jun 2021 18:53:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 155IrGRN095104; Sat, 5 Jun 2021 18:53:16 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 155IrFS5095103; Sat, 5 Jun 2021 18:53:15 GMT (envelope-from git) Date: Sat, 5 Jun 2021 18:53:15 GMT Message-Id: <202106051853.155IrFS5095103@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 8b8c1272ea64 - main - biology/jalview: Broken on 11 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 8b8c1272ea64f9db05d8b5cfed709881429df479 Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 05 Jun 2021 18:53:16 -0000 The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=8b8c1272ea64f9db05d8b5cfed709881429df479 commit 8b8c1272ea64f9db05d8b5cfed709881429df479 Author: Yuri Victorovich AuthorDate: 2021-06-05 17:43:00 +0000 Commit: Yuri Victorovich CommitDate: 2021-06-05 18:53:07 +0000 biology/jalview: Broken on 11 Also fix number of lines in pkg-descr, and replace space with tab. Reported by: fallout --- biology/jalview/Makefile | 4 +++- biology/jalview/pkg-descr | 3 --- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/biology/jalview/Makefile b/biology/jalview/Makefile index e9159ecb079b..67bee6fe6514 100644 --- a/biology/jalview/Makefile +++ b/biology/jalview/Makefile @@ -14,6 +14,8 @@ COMMENT= Viewer and editor for multiple sequence alignments LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE +BROKEN_FreeBSD_11= gradle daemon systematically fails on 11: The message received from the daemon indicates that the daemon has disappeared. + BUILD_DEPENDS= gradle:devel/gradle USE_JAVA= yes @@ -38,7 +40,7 @@ NO_ARCH= yes DEV_UPDATE_MODE= no -DEPS_CACHE_DIR= ${WRKDIR} +DEPS_CACHE_DIR= ${WRKDIR} .if (${DEV_UPDATE_MODE} == "yes") post-build: diff --git a/biology/jalview/pkg-descr b/biology/jalview/pkg-descr index 4fae9fde95ba..f8f1378b879d 100644 --- a/biology/jalview/pkg-descr +++ b/biology/jalview/pkg-descr @@ -19,7 +19,4 @@ o Sequence feature retrieval and display on the alignment. o Print your alignment with colours and annotations. o Output alignments as HTML pages, images (PNG) or postscript (EPS). -If you use Jalview in your work, please quote this publication. Clamp, M., et -al. (2004), The Jalview Java Alignment Editor. Bioinformatics, 12, 426-7 - WWW: https://www.jalview.org