Date: Mon, 6 Sep 2021 12:56:42 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: c085af1e8147 - main - biology/py-pywgsim: Modified wgsim genomic data simulator Message-ID: <202109061256.186CugxW025445@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=c085af1e81472458f64d957aab5e9a9e0580d8ca commit c085af1e81472458f64d957aab5e9a9e0580d8ca Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-09-06 12:55:49 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-09-06 12:55:49 +0000 biology/py-pywgsim: Modified wgsim genomic data simulator pywgsim is a modified version of the wgsim short read simulator. The code for wgsim has been modified to allow visualizing the simulated mutations as a GFF file. --- biology/Makefile | 1 + biology/py-pywgsim/Makefile | 17 +++++++++++++++++ biology/py-pywgsim/distinfo | 3 +++ biology/py-pywgsim/pkg-descr | 5 +++++ 4 files changed, 26 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 34d07d7a77a8..f97c311da9fe 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -156,6 +156,7 @@ SUBDIR += py-pyfaidx SUBDIR += py-pysam SUBDIR += py-python-libsbml + SUBDIR += py-pywgsim SUBDIR += py-resdk SUBDIR += py-scikit-bio SUBDIR += py-xenaPython diff --git a/biology/py-pywgsim/Makefile b/biology/py-pywgsim/Makefile new file mode 100644 index 000000000000..353ec916cbf3 --- /dev/null +++ b/biology/py-pywgsim/Makefile @@ -0,0 +1,17 @@ +PORTNAME= pywgsim +DISTVERSION= 0.5.2 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Modified wgsim genomic data simulator + +LICENSE= MIT + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}plac>=0:devel/py-plac@${PY_FLAVOR} + +USES= python +USE_PYTHON= autoplist distutils + +.include <bsd.port.mk> diff --git a/biology/py-pywgsim/distinfo b/biology/py-pywgsim/distinfo new file mode 100644 index 000000000000..a139ccb217c0 --- /dev/null +++ b/biology/py-pywgsim/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1630888272 +SHA256 (pywgsim-0.5.2.tar.gz) = b6726be21629bd1cda12592b536dcd62d250fc4872e47cbcc54066e8a6e8f709 +SIZE (pywgsim-0.5.2.tar.gz) = 81724 diff --git a/biology/py-pywgsim/pkg-descr b/biology/py-pywgsim/pkg-descr new file mode 100644 index 000000000000..7853be44bcd9 --- /dev/null +++ b/biology/py-pywgsim/pkg-descr @@ -0,0 +1,5 @@ +pywgsim is a modified version of the wgsim short read simulator. The +code for wgsim has been modified to allow visualizing the simulated +mutations as a GFF file. + +WWW: https://pypi.python.org/pypi/pywgsim
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