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Date:      Tue, 6 Aug 2019 02:29:17 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120powerpc64-quarterly][biology/hhsuite] Failed for hhsuite-3.2.0 in build
Message-ID:  <201908060229.x762THMn087292@pylon.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q3/biology/hhsuite/Makefile 502244 2019-05-22 02:50:56Z yuri $
Log URL:        http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/508200/logs/hhsuite-3.2.0.log
Build URL:      http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=508200
Log:

=>> Building biology/hhsuite
build started at Tue Aug  6 02:28:03 UTC 2019
port directory: /usr/ports/biology/hhsuite
package name: hhsuite-3.2.0
building for: FreeBSD 120powerpc64-quarterly-job-09 12.0-RELEASE-p8 FreeBSD 12.0-RELEASE-p8 1200086 powerpc
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q3/biology/hhsuite/Makefile 502244 2019-05-22 02:50:56Z yuri $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300037
Jail OSVERSION: 1200086
Job Id: 09

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POUDRIEREPATH=/usr/local/bin/poudriere
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---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/hhsuite/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/hhsuite/work  HOME=/wrkdirs/usr/ports/biology/hhsuite/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/hhsuite/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/hhsuite/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/hhsuite/work  HOME=/wrkdirs/usr/ports/biology/hhsuite/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/hhsuite/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/hhsuite/work/stage PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.6m  PYTHON_LIBDIR=lib/python3.6  PYTHON_PLATFORM=freebsd12  PYTHON_SITELIBDIR=lib/python3.6/site-packages  PYTHON_SUFFIX=36  PYTHON_VER=3.6  PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.2  PERL_VER=5.28  PERL5_MAN1=lib/perl5/site_perl/man/man1  PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/hhsuite"  EXAMPLESDIR="share/examples/hhsuite"  DATADIR="share/hhsuite"  WWWDIR="www/hhsuite"  ETCDIR="etc/hhsuite"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/hhsuite DOCSDIR=/usr/local/share/doc/hhsuite EXAMPLESDIR=/usr/local/share/examples/hhsuite  WWWDIR=/usr/local/www/hhsuite ETCDIR=/usr/local/etc/hhsuite
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

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LINT=	true
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#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
OPSYS=FreeBSD
_OSRELEASE=12.0-RELEASE-p8
OSREL=12.0
OSVERSION=1200086
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   hhsuite-3.2.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[120powerpc64-quarterly-job-09] Installing pkg-1.11.1...
[120powerpc64-quarterly-job-09] Extracting pkg-1.11.1: .......... done
===>   hhsuite-3.2.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of hhsuite-3.2.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.2.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.2.0 for building
=> SHA256 Checksum OK for soedinglab-hh-suite-v3.2.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by hhsuite-3.2.0 for building
===>  Extracting for hhsuite-3.2.0
=> SHA256 Checksum OK for soedinglab-hh-suite-v3.2.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for hhsuite-3.2.0
===>  Applying FreeBSD patches for hhsuite-3.2.0
===========================================================================
=======================<phase: build-depends  >============================
===>   hhsuite-3.2.0 depends on package: openmpi>0 - not found
===>   Installing existing package /packages/All/openmpi-1.10.7_5.txz
[120powerpc64-quarterly-job-09] Installing openmpi-1.10.7_5...
[120powerpc64-quarterly-job-09] `-- Installing gcc8-8.3.0_2...
[120powerpc64-quarterly-job-09] |   `-- Installing binutils-2.32_1,1...
[120powerpc64-quarterly-job-09] |   | `-- Installing gettext-runtime-0.20.1...
[120powerpc64-quarterly-job-09] |   |   `-- Installing indexinfo-0.3.1...
[120powerpc64-quarterly-job-09] |   |   `-- Extracting indexinfo-0.3.1: .... done
[120powerpc64-quarterly-job-09] |   | `-- Extracting gettext-runtime-0.20.1: .......... done
[120powerpc64-quarterly-job-09] |   `-- Extracting binutils-2.32_1,1: .......... done
[120powerpc64-quarterly-job-09] |   `-- Installing gmp-6.1.2_1...
[120powerpc64-quarterly-job-09] |   `-- Extracting gmp-6.1.2_1: .......... done
[120powerpc64-quarterly-job-09] |   `-- Installing mpc-1.1.0_2...
[120powerpc64-quarterly-job-09] |   | `-- Installing mpfr-4.0.2...
<snip>
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from perl5-5.28.2:

The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===>   hhsuite-3.2.0 depends on package: openmpi>0 - found
===>   Returning to build of hhsuite-3.2.0
===>   hhsuite-3.2.0 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-3.14.5.txz
[120powerpc64-quarterly-job-09] Installing cmake-3.14.5...
[120powerpc64-quarterly-job-09] `-- Installing curl-7.65.1...
[120powerpc64-quarterly-job-09] |   `-- Installing ca_root_nss-3.45...
[120powerpc64-quarterly-job-09] |   `-- Extracting ca_root_nss-3.45: ........ done
[120powerpc64-quarterly-job-09] |   `-- Installing libnghttp2-1.39.1...
[120powerpc64-quarterly-job-09] |   `-- Extracting libnghttp2-1.39.1: .......... done
[120powerpc64-quarterly-job-09] `-- Extracting curl-7.65.1: .......... done
[120powerpc64-quarterly-job-09] `-- Installing expat-2.2.6_1...
[120powerpc64-quarterly-job-09] `-- Extracting expat-2.2.6_1: .......... done
[120powerpc64-quarterly-job-09] `-- Installing jsoncpp-1.8.1_6...
[120powerpc64-quarterly-job-09] `-- Extracting jsoncpp-1.8.1_6: .......... done
[120powerpc64-quarterly-job-09] `-- Installing libarchive-3.3.3,1...
[120powerpc64-quarterly-job-09] |   `-- Installing lzo2-2.10_1...
[120powerpc64-quarterly-job-09] |   `-- Extracting lzo2-2.10_1: .......... done
[120powerpc64-quarterly-job-09] `-- Extracting libarchive-3.3.3,1: .......... done
[120powerpc64-quarterly-job-09] `-- Installing libuv-1.30.1...
[120powerpc64-quarterly-job-09] `-- Extracting libuv-1.30.1: .......... done
[120powerpc64-quarterly-job-09] `-- Installing rhash-1.3.5...
[120powerpc64-quarterly-job-09] `-- Extracting rhash-1.3.5: .......... done
[120powerpc64-quarterly-job-09] Extracting cmake-3.14.5: .......... done
Message from ca_root_nss-3.45:

********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   hhsuite-3.2.0 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of hhsuite-3.2.0
===>   hhsuite-3.2.0 depends on executable: ninja - not found
===>   Installing existing package /packages/All/ninja-1.9.0,2.txz
[120powerpc64-quarterly-job-09] Installing ninja-1.9.0,2...
[120powerpc64-quarterly-job-09] `-- Installing python36-3.6.9...
[120powerpc64-quarterly-job-09] |   `-- Installing libffi-3.2.1_3...
[120powerpc64-quarterly-job-09] |   `-- Extracting libffi-3.2.1_3: .......... done
[120powerpc64-quarterly-job-09] `-- Extracting python36-3.6.9: .......... done
[120powerpc64-quarterly-job-09] Extracting ninja-1.9.0,2: ......... done
Message from python36-3.6.9:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py36-gdbm       databases/py-gdbm@py36
py36-sqlite3    databases/py-sqlite3@py36
py36-tkinter    x11-toolkits/py-tkinter@py36

===========================================================================
===>   hhsuite-3.2.0 depends on executable: ninja - found
===>   Returning to build of hhsuite-3.2.0
===>   hhsuite-3.2.0 depends on file: /usr/local/bin/python3.6 - found
===>   hhsuite-3.2.0 depends on package: perl5>=5.28.r1<5.29 - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   hhsuite-3.2.0 depends on shared library: libomp.so - not found
===>   Installing existing package /packages/All/openmp-8.0.0_1.txz
[120powerpc64-quarterly-job-09] Installing openmp-8.0.0_1...
[120powerpc64-quarterly-job-09] Extracting openmp-8.0.0_1: .......... done
Message from openmp-8.0.0_1:

===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Part of base system since FreeBSD 11.3/12.1.

It is scheduled to be removed on or after 2020-02-01.
===>   hhsuite-3.2.0 depends on shared library: libomp.so - found (/usr/local/lib/libomp.so)
===>   Returning to build of hhsuite-3.2.0
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for hhsuite-3.2.0
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/hhsuite/work/.build
-- The C compiler identification is GNU 4.2.1
-- The CXX compiler identification is GNU 4.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for fmemopen
-- Looking for fmemopen - found
-- Found MPI_C: /usr/local/mpi/openmpi/lib/libmpi.so (found version "3.0") 
-- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS) 
-- Could NOT find MPI (missing: MPI_CXX_FOUND) (found version "3.0")
-- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS) 
-- Could NOT find MPI (missing: MPI_CXX_FOUND) (found version "3.0")
-- xxd not found, using xxdi.pl instead
-- SIMD: No HAVE_AVX2 or HAVE_SSE2 are set, trying to detect them
-- Using CPU native flags for SSE optimization:  -march=native
-- Performing Test HAVE_MM_MALLOC
-- Performing Test HAVE_MM_MALLOC - Failed
-- Performing Test HAVE_POSIX_MEMALIGN
-- Performing Test HAVE_POSIX_MEMALIGN - Failed
-- Performing Test HAVE_AVX2_EXTENSIONS
-- Performing Test HAVE_AVX2_EXTENSIONS - Failed
-- Performing Test HAVE_AVX_EXTENSIONS
-- Performing Test HAVE_AVX_EXTENSIONS - Failed
-- Performing Test HAVE_SSE4_2_EXTENSIONS
-- Performing Test HAVE_SSE4_2_EXTENSIONS - Failed
-- Performing Test HAVE_SSE4_1_EXTENSIONS
-- Performing Test HAVE_SSE4_1_EXTENSIONS - Failed
-- Performing Test HAVE_SSSE3_EXTENSIONS
-- Performing Test HAVE_SSSE3_EXTENSIONS - Failed
-- Performing Test HAVE_SSE3_EXTENSIONS
-- Performing Test HAVE_SSE3_EXTENSIONS - Failed
-- Performing Test HAVE_SSE2_EXTENSIONS
-- Performing Test HAVE_SSE2_EXTENSIONS - Failed
-- Performing Test HAVE_SSE_EXTENSIONS
-- Performing Test HAVE_SSE_EXTENSIONS - Failed
-- No SSE extensions found
-- SIMD: This platform doesn't have a supported SIMD instruction set, expect it to be slow.
-- Found OpenMP_C: -fopenmp (found version "2.5") 
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) 
-- Could NOT find OpenMP (missing: OpenMP_CXX_FOUND) (found version "2.5")
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    BOOST_PYTHON_SUFFIX
    CMAKE_COLOR_MAKEFILE
    CMAKE_C_FLAGS_DEBUG
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_SHARED_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    Python_ADDITIONAL_VERSIONS
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: /wrkdirs/usr/ports/biology/hhsuite/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for hhsuite-3.2.0
[1/96] /usr/bin/cc  -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src/ext -I/usr/local/mpi/openmpi/include -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing   -DHAVE_MPI=1 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o -MF lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o   -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src/ffindex_apply_mpi.c
[2/96] /usr/bin/cc  -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src/ext -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o   -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src/ffindex.c
[3/96] /usr/bin/cc  -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src/ext -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing   -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o   -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src/ffindex_apply_mpi.c
[4/96] /usr/bin/cc  -Igenerated -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src -I/wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src/ext -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o.d -o lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o   -c /wrkdirs/usr/ports/biology/hhsuite/work/hh-suite-3.2.0/lib/ffindex/src/ffutil.c
[5/96] : && /usr/local/bin/cmake -E remove lib/ffindex/src/libffindex.a && /usr/bin/ar qc lib/ffindex/src/libffindex.a  lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o && /usr/bin/ranlib lib/ffindex/src/libffindex.a && :
[6/96] : && /usr/bin/cc -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong   -Wl,-rpath=-Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath -Wl,/usr/local/mpi/openmpi/lib -Wl,--enable-new-dtags -pthread lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o  -o lib/ffindex/src/ffindex_apply_mpi  -Wl,-rpath,/usr/local/mpi/openmpi/lib: lib/ffindex/src/libffindex.a -lmpq /usr/local/mpi/openmpi/lib/libmpi.so && :
FAILED: lib/ffindex/src/ffindex_apply_mpi 
: && /usr/bin/cc -std=c99 -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing -O2 -pipe  -fstack-protector-strong -fno-strict-aliasing  -Wl,-rpath,/usr/local/mpi/openmpi/lib -L/usr/local/mpi/openmpi/lib -lmpi -fstack-protector-strong   -Wl,-rpath=-Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath -Wl,/usr/local/mpi/openmpi/lib -Wl,--enable-new-dtags -pthread lib/ffindex/src/CMakeFiles/ffindex_apply_mpi.dir/ffindex_apply_mpi.c.o  -o lib/ffindex/src/ffindex_apply_mpi  -Wl,-rpath,/usr/local/mpi/openmpi/lib: lib/ffindex/src/libffindex.a -lmpq /usr/local/mpi/openmpi/lib/libmpi.so && :
/usr/bin/ld: cannot find -lmpq
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/hhsuite



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