From owner-svn-ports-head@freebsd.org Sat Sep 28 10:52:58 2019 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 08F8A123232; Sat, 28 Sep 2019 10:52:58 +0000 (UTC) (envelope-from zeising@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 46gQVd6JP4z44sf; Sat, 28 Sep 2019 10:52:57 +0000 (UTC) (envelope-from zeising@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id BC12E504; Sat, 28 Sep 2019 10:52:57 +0000 (UTC) (envelope-from zeising@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x8SAqvMs007902; Sat, 28 Sep 2019 10:52:57 GMT (envelope-from zeising@FreeBSD.org) Received: (from zeising@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x8SAqvOw007901; Sat, 28 Sep 2019 10:52:57 GMT (envelope-from zeising@FreeBSD.org) Message-Id: <201909281052.x8SAqvOw007901@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: zeising set sender to zeising@FreeBSD.org using -f From: Niclas Zeising Date: Sat, 28 Sep 2019 10:52:57 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r513114 - head/biology/ncbi-toolkit X-SVN-Group: ports-head X-SVN-Commit-Author: zeising X-SVN-Commit-Paths: head/biology/ncbi-toolkit X-SVN-Commit-Revision: 513114 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 28 Sep 2019 10:52:58 -0000 Author: zeising Date: Sat Sep 28 10:52:57 2019 New Revision: 513114 URL: https://svnweb.freebsd.org/changeset/ports/513114 Log: biologi/ncbi-toolkit: Remove dependency on libXp Remove the dependency on libXp from ncbi-toolkit, since libXp is deprecated and it isn't needed. Remove deprecation from ncbi-toolkit. Modified: head/biology/ncbi-toolkit/Makefile Modified: head/biology/ncbi-toolkit/Makefile ============================================================================== --- head/biology/ncbi-toolkit/Makefile Sat Sep 28 10:48:06 2019 (r513113) +++ head/biology/ncbi-toolkit/Makefile Sat Sep 28 10:52:57 2019 (r513114) @@ -3,7 +3,7 @@ PORTNAME= ncbi-toolkit DISTVERSION= 2017.01.06 # containing BLAST v2.2.27 (? is this true) -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= biology MASTER_SITES= ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/ DISTNAME= ncbi @@ -12,8 +12,6 @@ DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= NCBI development toolkit, including BLAST 2 and GenBank/Entrez support -DEPRECATED= Depends on deprecated libXp - LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \ libgmp.so:math/gmp \ libgnutls.so:security/gnutls \ @@ -24,8 +22,7 @@ LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \ libpng.so:graphics/png \ libtasn1.so:security/libtasn1 \ libtspi.so:security/trousers \ - libunistring.so:devel/libunistring \ - libXp.so:x11/libXp + libunistring.so:devel/libunistring USES= gettext-runtime iconv jpeg motif xorg USE_XORG= x11 xau xext xft xmu xrender xt @@ -41,6 +38,8 @@ post-patch: '/^NCBI_CC/s|=.*|= ${CC}| ; \ /^NCBI_LDFLGS1/s|=.*|= ${LDFLAGS}| ; \ /^NCBI_OPTFLAG/s|= .*|= ${CFLAGS}| ; \ + /^NCBI_VIBLIBS/s|-lXp\ || ; \ + /^NCBI_DISTVIBLIBS/s|-lXp\ || ; \ s|-I/usr/X11R6/include||g ; \ s|-L/usr/X11R6/lib||g ; \ s|/usr/local|${LOCALBASE}|g ; \