From owner-freebsd-ports-bugs@FreeBSD.ORG Sat May 29 18:20:04 2010 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id EDE3B106567D for ; Sat, 29 May 2010 18:20:03 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (unknown [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id CB2F08FC1A for ; Sat, 29 May 2010 18:20:03 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.4/8.14.4) with ESMTP id o4TIK30A049038 for ; Sat, 29 May 2010 18:20:03 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.4/8.14.4/Submit) id o4TIK3dp049037; Sat, 29 May 2010 18:20:03 GMT (envelope-from gnats) Resent-Date: Sat, 29 May 2010 18:20:03 GMT Resent-Message-Id: <201005291820.o4TIK3dp049037@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Glen Barber Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id A0F24106564A for ; Sat, 29 May 2010 18:17:20 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 8FF398FC18 for ; Sat, 29 May 2010 18:17:20 +0000 (UTC) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id o4TIHKd9036372 for ; Sat, 29 May 2010 18:17:20 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id o4TIHK5I036371; Sat, 29 May 2010 18:17:20 GMT (envelope-from nobody) Message-Id: <201005291817.o4TIHK5I036371@www.freebsd.org> Date: Sat, 29 May 2010 18:17:20 GMT From: Glen Barber To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/147194: [patch][maintainer] biology/migrate: update to latest version X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 29 May 2010 18:20:04 -0000 >Number: 147194 >Category: ports >Synopsis: [patch][maintainer] biology/migrate: update to latest version >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sat May 29 18:20:03 UTC 2010 >Closed-Date: >Last-Modified: >Originator: Glen Barber >Release: 8.1-PRERELEASE >Organization: >Environment: FreeBSD orion 8.1-PRERELEASE FreeBSD 8.1-PRERELEASE #0 r208605: Thu May 27 21:03:37 EDT 2010 root@orion:/usr/obj/usr/src/sys/ORION amd64 >Description: Update biology/migrate from 3.1.4 to 3.1.6 Files changed: - Makefile - distinfo - files/patch-Makefile.in >How-To-Repeat: >Fix: Patch attached with submission follows: diff -ruN /usr/ports/biology/migrate.orig/Makefile /usr/ports/biology/migrate/Makefile --- /usr/ports/biology/migrate.orig/Makefile 2010-05-09 09:59:34.000000000 -0400 +++ /usr/ports/biology/migrate/Makefile 2010-05-29 13:48:46.074321595 -0400 @@ -6,7 +6,7 @@ # PORTNAME= migrate -PORTVERSION= 3.1.4 +PORTVERSION= 3.1.6 CATEGORIES= biology MASTER_SITES= http://people.sc.fsu.edu/~beerli/popgen/currentversion/ DISTNAME= ${PORTNAME}-${PORTVERSION}.src diff -ruN /usr/ports/biology/migrate.orig/distinfo /usr/ports/biology/migrate/distinfo --- /usr/ports/biology/migrate.orig/distinfo 2010-05-09 09:59:34.000000000 -0400 +++ /usr/ports/biology/migrate/distinfo 2010-05-29 13:48:52.121076140 -0400 @@ -1,3 +1,3 @@ -MD5 (migrate-3.1.4.src.tar.gz) = a1ffa3baa8a78b17b2dcb387de7801ee -SHA256 (migrate-3.1.4.src.tar.gz) = f09d35f544865f1cde3677b9b347b8a5de9e907f81d4f509e8f15c2fd28ea110 -SIZE (migrate-3.1.4.src.tar.gz) = 2227530 +MD5 (migrate-3.1.6.src.tar.gz) = 2a01e72d203029cb2176d4f895cea8b0 +SHA256 (migrate-3.1.6.src.tar.gz) = 03bd8668d620b3db16b7da63b3ba4a09d343c1e36133c267e9ceee397775d032 +SIZE (migrate-3.1.6.src.tar.gz) = 2808609 diff -ruN /usr/ports/biology/migrate.orig/files/patch-Makefile.in /usr/ports/biology/migrate/files/patch-Makefile.in --- /usr/ports/biology/migrate.orig/files/patch-Makefile.in 2010-05-09 09:59:34.000000000 -0400 +++ /usr/ports/biology/migrate/files/patch-Makefile.in 2010-05-29 13:56:34.834880269 -0400 @@ -3,7 +3,7 @@ @@ -80,7 +80,7 @@ # -DNEXUSTREE print nexus tree instead of plain newick trees # -UEP calculates unique event polymorphism - NEWSTUFF = + NEWSTUFF = -DNEWVERSION -DBFDEBUG -COMMONFLAGS = $(ARCH) $(MACOSVERSION) $(NEWSTUFF) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS) +COMMONFLAGS = $(MACOSVERSION) $(NEWSTUFF) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS) # >Release-Note: >Audit-Trail: >Unformatted: