Date: Mon, 3 Feb 2020 05:04:03 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 120amd64-default][science/gromacs] Failed for gromacs-2020_1 in build Message-ID: <202002030504.0135439U081629@beefy6.nyi.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: swills@FreeBSD.org Ident: $FreeBSD: head/science/gromacs/Makefile 524642 2020-01-30 14:17:44Z swills $ Log URL: http://beefy6.nyi.freebsd.org/data/120amd64-default/524799/logs/gromacs-2020_1.log Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=120amd64-default&build=524799 Log: =>> Building science/gromacs build started at Mon Feb 3 05:02:05 UTC 2020 port directory: /usr/ports/science/gromacs package name: gromacs-2020_1 building for: FreeBSD 120amd64-default-job-17 12.0-RELEASE-p13 FreeBSD 12.0-RELEASE-p13 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/gromacs/Makefile 524642 2020-01-30 14:17:44Z swills $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300076 Jail OSVERSION: 1200086 Job Id: 17 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p13 UNAME_r=12.0-RELEASE-p13 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/120amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-2020_1: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=on: Use single instead of double precision OPENCL=off: Heterogeneous computing via OpenCL OPENMP=on: Parallel processing support via OpenMP SIMD=off: Use CPU-specific optimizations X11=on: X11 (graphics) support ====> Multiprocessing: you have to select exactly one of them NOMP=off: No multiprocessing support MPICH=off: Parallel processing support via MPICH OPENMPI=off: Parallel processing support via Open MPI THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack- protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " SUFFIX_D="" MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " SUFFIX_MPI="" X11="" NO_X11="@comment " CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.30.1 PERL_VER=5.30 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " X11="" NO_X11="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE-p13 OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> gromacs-2020_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz [120amd64-default-job-17] Installing pkg-1.12.0_1... [120amd64-default-job-17] Extracting pkg-1.12.0_1: .......... done ===> gromacs-2020_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gromacs-2020_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2020_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2020_1 for building => SHA256 Checksum OK for gromacs-2020.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2020_1 for building ===> Extracting for gromacs-2020_1 => SHA256 Checksum OK for gromacs-2020.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for gromacs-2020_1 ===> Applying FreeBSD patches for gromacs-2020_1 =========================================================================== =======================<phase: build-depends >============================ ===> gromacs-2020_1 depends on package: boost-libs>=1.44 - not found ===> Installing existing package /packages/All/boost-libs-1.72.0.txz [120amd64-default-job-17] Installing boost-libs-1.72.0... [120amd64-default-job-17] `-- Installing icu-65.1,1... [120amd64-default-job-17] `-- Extracting icu-65.1,1: .......... done [120amd64-default-job-17] Extracting boost-libs-1.72.0: .......... done <snip> cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/collective.cpp [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/profile.cpp [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/comm.cpp [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/reduce.cpp [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/event.cpp [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/reduce_fast.cpp [ 4%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/gather.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/scatter.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/group.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/tmpi_init.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/topology.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/list.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/type.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/scan.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/numa_malloc.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/src/once.cpp [ 5%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend cd /wrkdirs/usr/ports/science/gromacs/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020 /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra /wrkdirs/usr/ports/science/gromacs/work/.build /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake Scanning dependencies of target linearalgebra /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/eigensolver.cpp [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/gmx_arpack.cpp [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/matrix.cpp [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/nrjac.cpp [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/linearalgebra/sparsematrix.cpp [ 5%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend cd /wrkdirs/usr/ports/science/gromacs/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020 /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator /wrkdirs/usr/ports/science/gromacs/work/.build /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake Scanning dependencies of target modularsimulator /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/checkpointhelper.cpp [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/compositesimulatorelement.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/computeglobalselement.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/constraintelement.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/domdechelper.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/energyelement.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/forceelement.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/modularsimulator.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -fopenmp=libomp -I/usr/local/include -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:471:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::Single, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::Single, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:477:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::Single, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::Single, ParrinelloRahmanVelocityScaling::No>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:486:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::Multiple, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::Multiple, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:492:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::Multiple, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::Multiple, ParrinelloRahmanVelocityScaling::No>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:501:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::None, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::None, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:201:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:507:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocitiesOnly>::run<gmx::NumVelocityScalingValues::None, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::None, ParrinelloRahmanVelocityScaling::No>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:471:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::Single, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::Single, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:477:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::Single, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::Single, ParrinelloRahmanVelocityScaling::No>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:486:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::Multiple, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::Multiple, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:492:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::Multiple, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::Multiple, ParrinelloRahmanVelocityScaling::No>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:501:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::None, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::None, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:298:47: error: variable 'lambda' must have explicitly specified data sharing attributes a, timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:507:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::LeapFrog>::run<gmx::NumVelocityScalingValues::None, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::None, ParrinelloRahmanVelocityScaling::No>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53: error: variable 'lambda' must have explicitly specified data sharing attributes a, 0.5 * timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:471:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::Single, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::Single, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53: error: variable 'lambda' must have explicitly specified data sharing attributes a, 0.5 * timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:477:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::Single, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::Single, ParrinelloRahmanVelocityScaling::No>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53: error: variable 'lambda' must have explicitly specified data sharing attributes a, 0.5 * timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:486:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::Multiple, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::Multiple, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53: error: variable 'lambda' must have explicitly specified data sharing attributes a, 0.5 * timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:492:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::Multiple, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::Multiple, ParrinelloRahmanVelocityScaling::No>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53: error: variable 'lambda' must have explicitly specified data sharing attributes a, 0.5 * timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:501:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::None, gmx::ParrinelloRahmanVelocityScaling::Full>' requested here run<NumVelocityScalingValues::None, ParrinelloRahmanVelocityScaling::Full>(); ^ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:396:53: error: variable 'lambda' must have explicitly specified data sharing attributes a, 0.5 * timestep_, lambda, invMassPerDim, v, f, diagPR, matrixPR); ^~~~~~ /wrkdirs/usr/ports/science/gromacs/work/gromacs-2020/src/gromacs/modularsimulator/propagator.cpp:507:17: note: in instantiation of function template specialization 'gmx::Propagator<gmx::IntegrationStep::VelocityVerletPositionsAndVelocities>::run<gmx::NumVelocityScalingValues::None, gmx::ParrinelloRahmanVelocityScaling::No>' requested here run<NumVelocityScalingValues::None, ParrinelloRahmanVelocityScaling::No>(); ^ 18 errors generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build *** Error code 1 Stop. make: stopped in /usr/ports/science/gromacs
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202002030504.0135439U081629>