Date: Sun, 9 Jun 2019 03:26:16 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r503774 - in head/science: . smoldyn Message-ID: <201906090326.x593QGGw051178@repo.freebsd.org>
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Author: yuri Date: Sun Jun 9 03:26:15 2019 New Revision: 503774 URL: https://svnweb.freebsd.org/changeset/ports/503774 Log: New port: science/smoldyn: Biochemical simulator for molecular diffusion, surface interactions Added: head/science/smoldyn/ head/science/smoldyn/Makefile (contents, props changed) head/science/smoldyn/distinfo (contents, props changed) head/science/smoldyn/pkg-descr (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Sun Jun 9 03:24:40 2019 (r503773) +++ head/science/Makefile Sun Jun 9 03:26:15 2019 (r503774) @@ -308,6 +308,7 @@ SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith + SUBDIR += smoldyn SUBDIR += sparta SUBDIR += spglib SUBDIR += step Added: head/science/smoldyn/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/smoldyn/Makefile Sun Jun 9 03:26:15 2019 (r503774) @@ -0,0 +1,22 @@ +# $FreeBSD$ + +PORTNAME= smoldyn +DISTVERSION= 2.60 +CATEGORIES= science +MASTER_SITES= http://www.smoldyn.org/ + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Biochemical simulator for molecular diffusion, surface interactions + +LICENSE= LGPL3 +LICENSE_FILE= ${WRKSRC}/License.txt + +LIB_DEPENDS= libtiff.so:graphics/tiff + +USES= cmake gl tar:tgz +USE_GL= gl glu glut +USE_XORG= xi xmu + +PLIST_FILES= bin/${PORTNAME} + +.include <bsd.port.mk> Added: head/science/smoldyn/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/smoldyn/distinfo Sun Jun 9 03:26:15 2019 (r503774) @@ -0,0 +1,3 @@ +TIMESTAMP = 1560034820 +SHA256 (smoldyn-2.60.tgz) = 912cfbd2d165070fe7c36542b1c312a8dec100d4979223e63feafc6a201833af +SIZE (smoldyn-2.60.tgz) = 44801998 Added: head/science/smoldyn/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/smoldyn/pkg-descr Sun Jun 9 03:26:15 2019 (r503774) @@ -0,0 +1,15 @@ +Smoldyn is a computer program for cell-scale biochemical simulations. It +simulates each molecule of interest individually to capture natural +stochasticity and to yield nanometer-scale spatial resolution. It treats other +molecules implicitly, enabling it to simulate hundreds of thousands of molecules +over several minutes of real time. Simulated molecules diffuse, react, are +confined by surfaces, and bind to membranes much as they would in a real +biological system. + +Smoldyn is easy to use and easy to install. It is more accurate and faster than +other particle-based simulators. Smoldyn's unique features include: +a "virtual experimenter" who can manipulate or measure the simulated system, +support for spatial compartments, molecules with excluded volume, and +simulations in 1, 2, or 3 dimensions. + +WWW: http://www.smoldyn.org/
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