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Date:      Tue, 22 Aug 2017 12:44:03 GMT
From:      pkg-fallout@FreeBSD.org
To:        wen@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [exp - 103i386-default-build-as-user][science/R-cran-AMORE] Failed for R-cran-AMORE-0.2.14_3 in stage
Message-ID:  <201708221244.v7MCi3u3048450@package19.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     wen@FreeBSD.org
Last committer: dbn@FreeBSD.org
Ident:          $FreeBSD: head/science/R-cran-AMORE/Makefile 443845 2017-06-18 18:09:16Z dbn $
Log URL:        http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/448504/logs/R-cran-AMORE-0.2.14_3.log
Build URL:      http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=448504
Log:

====>> Building science/R-cran-AMORE
build started at Tue Aug 22 12:43:14 UTC 2017
port directory: /usr/ports/science/R-cran-AMORE
building for: FreeBSD 103i386-default-build-as-user-job-23 10.3-RELEASE-p21 FreeBSD 10.3-RELEASE-p21 i386
maintained by: wen@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/R-cran-AMORE/Makefile 443845 2017-06-18 18:09:16Z dbn $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200040
Jail OSVERSION: 1003000
Job Id: 23

---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1003000
UNAME_v=FreeBSD 10.3-RELEASE-p21
UNAME_r=10.3-RELEASE-p21
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=R-cran-AMORE-0.2.14_3
OLDPWD=/
PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool
MASTERNAME=103i386-default-build-as-user
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
GID=0
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work  HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work  HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5  -L/usr/local/lib/gcc5 -B/usr/local/
 bin -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
R_MOD_DIR=lib/R/library/AMORE
OSREL=10.3
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/AMORE"
EXAMPLESDIR="share/examples/AMORE"
DATADIR="share/AMORE"
WWWDIR="www/AMORE"
ETCDIR="etc/AMORE"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/AMORE
DOCSDIR=/usr/local/share/doc/AMORE
EXAMPLESDIR=/usr/local/share/examples/AMORE
WWWDIR=/usr/local/www/AMORE
ETCDIR=/usr/local/etc/AMORE
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
FORCE_PACKAGE=yes
PACKAGE_BUILDING=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=i386
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=10.3
OSVERSION=1003000
PYTHONBASE=/usr/local
_JAVA_OS_LIST_REGEXP=native|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun
_JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+
_OSRELEASE=10.3-RELEASE-p21
#### Misc Poudriere ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
sbsize                   (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   R-cran-AMORE-0.2.14_3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[103i386-default-build-as-user-job-23] Installing pkg-1.10.1...
[103i386-default-build-as-user-job-23] Extracting pkg-1.10.1: .......... done
===>   R-cran-AMORE-0.2.14_3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of R-cran-AMORE-0.2.14_3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-AMORE-0.2.14_3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-AMORE-0.2.14_3 for building
=> SHA256 Checksum OK for AMORE_0.2-14.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 GPLv3 accepted by the user
===> Fetching all distfiles required by R-cran-AMORE-0.2.14_3 for building
===>  Extracting for R-cran-AMORE-0.2.14_3
=> SHA256 Checksum OK for AMORE_0.2-14.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for R-cran-AMORE-0.2.14_3
===========================================================================
=======================<phase: build-depends  >============================
===>   R-cran-AMORE-0.2.14_3 depends on file: /usr/local/bin/R - not found
===>   Installing existing package /packages/All/R-3.4.1_4.txz
[103i386-default-build-as-user-job-23] Installing R-3.4.1_4...
[103i386-default-build-as-user-job-23] `-- Installing cairo-1.14.8_1,2...
[103i386-default-build-as-user-job-23] |   `-- Installing dri2proto-2.8...
[103i386-default-build-as-user-job-23] |   `-- Extracting dri2proto-2.8: .... done
[103i386-default-build-as-user-job-23] |   `-- Installing fontconfig-2.12.1,1...
[103i386-default-build-as-user-job-23] |   | `-- Installing expat-2.2.1...
[103i386-default-build-as-user-job-23] |   | `-- Extracting expat-2.2.1: .......... done
[103i386-default-build-as-user-job-23] |   | `-- Installing freetype2-2.8...
[103i386-default-build-as-user-job-23] |   | `-- Extracting freetype2-2.8: .......... done
[103i386-default-build-as-user-job-23] |   `-- Extracting fontconfig-2.12.1,1: .......... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
fc-cache: succeeded
[103i386-default-build-as-user-job-23] |   `-- Installing gettext-runtime-0.19.8.1_1...
[103i386-default-build-as-user-job-23] |   | `-- Installing indexinfo-0.2.6...
[103i386-default-build-as-user-job-23] |   | `-- Extracting indexinfo-0.2.6: .... done
[103i386-default-build-as-user-job-23] |   `-- Extracting gettext-runtime-0.19.8.1_1: .......... done
[103i386-default-build-as-user-job-23] |   `-- Installing glib-2.50.2_4,1...
[103i386-default-build-as-user-job-23] |   | `-- Installing libffi-3.2.1...
[103i386-default-build-as-user-job-23] |   | `-- Extracting libffi-3.2.1: .......... done
[103i386-default-build-as-user-job-23] |   | `-- Installing libiconv-1.14_10...
[103i386-default-build-as-user-job-23] |   | `-- Extracting libiconv-1.14_10: .......... done
[103i386-default-build-as-user-job-23] |   | `-- Installing pcre-8.40_1...
[103i386-default-build-as-user-job-23] |   | `-- Extracting pcre-8.40_1: .......... done
[103i386-default-build-as-user-job-23] |   | `-- Installing perl5-5.24.2...
[103i386-default-build-as-user-job-23] |   | `-- Extracting perl5-5.24.2: .......... done
[103i386-default-build-as-user-job-23] |   | `-- Installing python27-2.7.13_7...
[103i386-default-build-as-user-job-23] |   |   `-- Installing readline-7.0.3...
<snip>
[103i386-default-build-as-user-job-23] |   `-- Extracting libXt-1.1.5,1: .......... done
[103i386-default-build-as-user-job-23] `-- Extracting libXmu-1.1.2_3,1: .......... done
[103i386-default-build-as-user-job-23] `-- Installing pango-1.40.6...
[103i386-default-build-as-user-job-23] |   `-- Installing encodings-1.0.4_3,1...
[103i386-default-build-as-user-job-23] |   | `-- Installing font-util-1.3.1...
[103i386-default-build-as-user-job-23] |   | `-- Extracting font-util-1.3.1: .......... done
[103i386-default-build-as-user-job-23] |   `-- Extracting encodings-1.0.4_3,1: .......... done
[103i386-default-build-as-user-job-23] |   `-- Installing harfbuzz-1.4.8...
[103i386-default-build-as-user-job-23] |   | `-- Installing graphite2-1.3.10...
[103i386-default-build-as-user-job-23] |   | `-- Extracting graphite2-1.3.10: .......... done
[103i386-default-build-as-user-job-23] |   `-- Extracting harfbuzz-1.4.8: .......... done
[103i386-default-build-as-user-job-23] |   `-- Installing libXft-2.3.2_1...
[103i386-default-build-as-user-job-23] |   `-- Extracting libXft-2.3.2_1: ......... done
[103i386-default-build-as-user-job-23] |   `-- Installing xorg-fonts-truetype-7.7_1...
[103i386-default-build-as-user-job-23] |   | `-- Installing dejavu-2.37...
[103i386-default-build-as-user-job-23] |   |   `-- Installing mkfontdir-1.0.7...
[103i386-default-build-as-user-job-23] |   |   | `-- Installing mkfontscale-1.1.2...
[103i386-default-build-as-user-job-23] |   |   |   `-- Installing libfontenc-1.1.3_1...
[103i386-default-build-as-user-job-23] |   |   |   `-- Extracting libfontenc-1.1.3_1: ......... done
[103i386-default-build-as-user-job-23] |   |   | `-- Extracting mkfontscale-1.1.2: .. done
[103i386-default-build-as-user-job-23] |   |   `-- Extracting mkfontdir-1.0.7: .. done
[103i386-default-build-as-user-job-23] |   | `-- Extracting dejavu-2.37: .......... done
[103i386-default-build-as-user-job-23] |   | `-- Installing font-bh-ttf-1.0.3_3...
[103i386-default-build-as-user-job-23] |   | `-- Extracting font-bh-ttf-1.0.3_3: .......... done
[103i386-default-build-as-user-job-23] |   | `-- Installing font-misc-ethiopic-1.0.3_3...
[103i386-default-build-as-user-job-23] |   | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done
[103i386-default-build-as-user-job-23] |   | `-- Installing font-misc-meltho-1.0.3_3...
[103i386-default-build-as-user-job-23] |   | `-- Extracting font-misc-meltho-1.0.3_3: .......... done
[103i386-default-build-as-user-job-23] `-- Extracting pango-1.40.6: .......... done
[103i386-default-build-as-user-job-23] `-- Installing tcl86-8.6.7...
[103i386-default-build-as-user-job-23] `-- Extracting tcl86-8.6.7: .......... done
[103i386-default-build-as-user-job-23] `-- Installing tk86-8.6.7...
[103i386-default-build-as-user-job-23] `-- Extracting tk86-8.6.7: .......... done
[103i386-default-build-as-user-job-23] `-- Installing wget-1.19.1_1...
[103i386-default-build-as-user-job-23] `-- Extracting wget-1.19.1_1: .......... done
[103i386-default-build-as-user-job-23] Extracting R-3.4.1_4: .......... done
Message from freetype2-2.8:
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).

The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:

FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
	cff:no-stem-darkening=1 \
	autofitter:warping=1

This allows to select, say, the subpixel hinting mode at runtime for a given
application.

The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed).
Message from perl5-5.24.2:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
Message from python27-2.7.13_7:
===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
Message from ca_root_nss-3.32:
********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
Message from gcc5-5.4.0_3:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc5

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from trousers-0.3.14_1:
To run tcsd automatically, add the following line to /etc/rc.conf:

tcsd_enable="YES"

You might want to edit /usr/local/etc/tcsd.conf to reflect your setup.

If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:

tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"

To use TPM, add your_account to '_tss' group like following:

# pw groupmod _tss -m your_account
Message from ghostscript9-agpl-base-9.16_5:
Note: in order to use the script "dvipdf", dvips must be installed.
This program is provided by another package print/tex-dvipsk.

FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init
have to be configured if you want to use FAPI feature.
Message from dejavu-2.37:
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
Message from R-3.4.1_4:
========================================================================
On 11.1 and later, there is a problem downloading R packages when
gfortran is chosen as the fortran compiler.

Use either of these workarounds until a permanent solution is found.

1. If you are on an amd64 system, you can use flang as the fortran
   compiler.

2. If you choose gfortran as the fortran compiler, you can add

   options(download.file.method="wget")

   to ~/.Rprofile followed by a newline.

Details: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=221127
========================================================================
===>   R-cran-AMORE-0.2.14_3 depends on file: /usr/local/bin/R - found
===>   Returning to build of R-cran-AMORE-0.2.14_3
===>   R-cran-AMORE-0.2.14_3 depends on executable: gfortran5 - found
===>   R-cran-AMORE-0.2.14_3 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for R-cran-AMORE-0.2.14_3
===========================================================================
=======================<phase: build          >============================
===========================================================================
=======================<phase: run-depends    >============================
===>   R-cran-AMORE-0.2.14_3 depends on file: /usr/local/bin/R - found
===>   R-cran-AMORE-0.2.14_3 depends on executable: gfortran5 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for R-cran-AMORE-0.2.14_3
===>   Generating temporary packing list
* installing *source* package 'AMORE' ...
** package 'AMORE' successfully unpacked and MD5 sums checked
** libs
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/R-cran-AMORE/work/AMORE/src'
/usr/local/bin/clang40 -I/usr/local/lib/R/include -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include   -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c ADAPTgd.c -o ADAPTgd.o
gmake[1]: /usr/local/bin/clang40: Command not found
gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:159: ADAPTgd.o] Error 127
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/R-cran-AMORE/work/AMORE/src'
ERROR: compilation failed for package 'AMORE'
* removing '/wrkdirs/usr/ports/science/R-cran-AMORE/work/stage/usr/local/lib/R/library/AMORE'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/R-cran-AMORE



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