Date: Sun, 8 Dec 2019 16:49:31 +0000 (UTC) From: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r519320 - in head/biology: . p5-Bio-Variation Message-ID: <201912081649.xB8GnVLY054469@repo.freebsd.org>
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Author: sunpoet Date: Sun Dec 8 16:49:31 2019 New Revision: 519320 URL: https://svnweb.freebsd.org/changeset/ports/519320 Log: Add p5-Bio-Variation 1.7.4 Bio::Variation::* provides BioPerl variation-related functionality. WWW: https://metacpan.org/release/Bio-Variation Added: head/biology/p5-Bio-Variation/ head/biology/p5-Bio-Variation/Makefile (contents, props changed) head/biology/p5-Bio-Variation/distinfo (contents, props changed) head/biology/p5-Bio-Variation/pkg-descr (contents, props changed) head/biology/p5-Bio-Variation/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sun Dec 8 16:49:25 2019 (r519319) +++ head/biology/Makefile Sun Dec 8 16:49:31 2019 (r519320) @@ -98,6 +98,7 @@ SUBDIR += p5-Bio-NEXUS SUBDIR += p5-Bio-Phylo SUBDIR += p5-Bio-SCF + SUBDIR += p5-Bio-Variation SUBDIR += p5-BioPerl SUBDIR += p5-BioPerl-Run SUBDIR += p5-TrimGalore Added: head/biology/p5-Bio-Variation/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Variation/Makefile Sun Dec 8 16:49:31 2019 (r519320) @@ -0,0 +1,30 @@ +# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org> +# $FreeBSD$ + +PORTNAME= Bio-Variation +PORTVERSION= 1.7.4 +CATEGORIES= biology perl5 +MASTER_SITES= CPAN +PKGNAMEPREFIX= p5- + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= BioPerl variation-related functionality + +LICENSE= ART10 GPLv1+ +LICENSE_COMB= dual +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= ${RUN_DEPENDS} +RUN_DEPENDS= p5-Bio-DB-EMBL>=0:biology/p5-Bio-DB-EMBL \ + p5-Bio-DB-NCBIHelper>=0:biology/p5-Bio-DB-NCBIHelper \ + p5-BioPerl>=0:biology/p5-BioPerl \ + p5-IO-String>=0:devel/p5-IO-String \ + p5-XML-Twig>=0:textproc/p5-XML-Twig \ + p5-XML-Writer>=0.400:textproc/p5-XML-Writer + +USES= perl5 +USE_PERL5= configure + +NO_ARCH= yes + +.include <bsd.port.mk> Added: head/biology/p5-Bio-Variation/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Variation/distinfo Sun Dec 8 16:49:31 2019 (r519320) @@ -0,0 +1,3 @@ +TIMESTAMP = 1575793787 +SHA256 (Bio-Variation-1.7.4.tar.gz) = b5dc609c5bbd39937cdce0e5cbf299a2e2cf30c235fe6f71c904ae7dc1697b56 +SIZE (Bio-Variation-1.7.4.tar.gz) = 60449 Added: head/biology/p5-Bio-Variation/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Variation/pkg-descr Sun Dec 8 16:49:31 2019 (r519320) @@ -0,0 +1,3 @@ +Bio::Variation::* provides BioPerl variation-related functionality. + +WWW: https://metacpan.org/release/Bio-Variation Added: head/biology/p5-Bio-Variation/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Variation/pkg-plist Sun Dec 8 16:49:31 2019 (r519320) @@ -0,0 +1,27 @@ +bin/bp_flanks +%%SITE_PERL%%/Bio/Variation.pm +%%SITE_PERL%%/Bio/Variation/AAChange.pm +%%SITE_PERL%%/Bio/Variation/AAReverseMutate.pm +%%SITE_PERL%%/Bio/Variation/Allele.pm +%%SITE_PERL%%/Bio/Variation/DNAMutation.pm +%%SITE_PERL%%/Bio/Variation/IO.pm +%%SITE_PERL%%/Bio/Variation/IO/flat.pm +%%SITE_PERL%%/Bio/Variation/IO/xml.pm +%%SITE_PERL%%/Bio/Variation/README +%%SITE_PERL%%/Bio/Variation/RNAChange.pm +%%SITE_PERL%%/Bio/Variation/SNP.pm +%%SITE_PERL%%/Bio/Variation/SeqDiff.pm +%%SITE_PERL%%/Bio/Variation/VariantI.pm +%%PERL5_MAN1%%/bp_flanks.1.gz +%%PERL5_MAN3%%/Bio::Variation.3.gz +%%PERL5_MAN3%%/Bio::Variation::AAChange.3.gz +%%PERL5_MAN3%%/Bio::Variation::AAReverseMutate.3.gz +%%PERL5_MAN3%%/Bio::Variation::Allele.3.gz +%%PERL5_MAN3%%/Bio::Variation::DNAMutation.3.gz +%%PERL5_MAN3%%/Bio::Variation::IO.3.gz +%%PERL5_MAN3%%/Bio::Variation::IO::flat.3.gz +%%PERL5_MAN3%%/Bio::Variation::IO::xml.3.gz +%%PERL5_MAN3%%/Bio::Variation::RNAChange.3.gz +%%PERL5_MAN3%%/Bio::Variation::SNP.3.gz +%%PERL5_MAN3%%/Bio::Variation::SeqDiff.3.gz +%%PERL5_MAN3%%/Bio::Variation::VariantI.3.gz
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