From owner-freebsd-ports@FreeBSD.ORG Fri Feb 9 09:04:25 2007 Return-Path: X-Original-To: freebsd-ports@freebsd.org Delivered-To: freebsd-ports@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [69.147.83.52]) by hub.freebsd.org (Postfix) with ESMTP id 0E28E16A406 for ; Fri, 9 Feb 2007 09:04:25 +0000 (UTC) (envelope-from maho.nakata@gmail.com) Received: from nz-out-0506.google.com (nz-out-0506.google.com [64.233.162.233]) by mx1.freebsd.org (Postfix) with ESMTP id C472513C4AA for ; Fri, 9 Feb 2007 09:04:24 +0000 (UTC) (envelope-from maho.nakata@gmail.com) Received: by nz-out-0506.google.com with SMTP id i11so798929nzh for ; Fri, 09 Feb 2007 01:04:24 -0800 (PST) DomainKey-Signature: a=rsa-sha1; c=nofws; d=gmail.com; s=beta; h=received:date:message-id:to:cc:subject:from:in-reply-to:references:x-mailer:mime-version:content-type:content-transfer-encoding:sender; b=Jtny3zp1vDsqLVr0dGDwAqMi1sH8h1/l0NU8aPqpkAcYsxpB9AkoJsW6/r9T3adr53dfi/yYEFnB9XVan/rpaMXU5ttl5BjIdcct/NEIXerbcIvz9Y6cUvi4ayOrHPTCYBby2gMOO4Ilqd0/NNAXBfqjfHZ74V+03fmwMbW7le4= Received: by 10.35.125.16 with SMTP id c16mr24958540pyn.1171011864240; Fri, 09 Feb 2007 01:04:24 -0800 (PST) Received: from localhost ( [133.11.172.102]) by mx.google.com with ESMTP id i5sm4381763nzi.2007.02.09.01.04.22; Fri, 09 Feb 2007 01:04:23 -0800 (PST) Date: Fri, 09 Feb 2007 18:04:18 +0900 (JST) Message-Id: <20070209.180418.85375367.chat95@mac.com> To: rpvoland@facstaff.wisc.edu From: Maho NAKATA In-Reply-To: <20070209.154656.63087958.chat95@mac.com> References: <45B8CBFB.6090001@facstaff.wisc.edu> <20070126.113458.35660495.chat95@mac.com> <20070209.154656.63087958.chat95@mac.com> X-Mailer: Mew version 5.1 on Emacs 21.3 / Mule 5.0 (SAKAKI) Mime-Version: 1.0 Content-Type: Text/Plain; charset=us-ascii Content-Transfer-Encoding: 7bit Sender: Maho NAKATA Cc: vdemart1@tin.it, freebsd-ports@freebsd.org Subject: Re: math/R eats up all. X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 09 Feb 2007 09:04:25 -0000 Hi all, Futher investigation, if we select libgoto, configure doesn't use -lalapack -lcblas; fall back to internal lapack. So - Following patch worked for me (PentiumM). Index: Makefile =================================================================== RCS file: /home/pcvs/ports/math/R/Makefile,v retrieving revision 1.57 diff -u -r1.57 Makefile --- Makefile 25 Jan 2007 17:56:40 -0000 1.57 +++ Makefile 9 Feb 2007 09:00:45 -0000 @@ -72,7 +72,9 @@ .if defined(WITH_ATLAS) LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas -CONFIGURE_ARGS+=--with-lapack="-lalapack -lcblas" --with-blas="-lf77blas" +#CONFIGURE_ARGS+=--with-lapack="-lalapack -lcblas" --with-blas="-lf77blas -latlas" +CONFIGURE_ARGS+= --with-blas="-lf77blas -latlas" +#CONFIGURE_ARGS+= --with-blas="-lgoto" PLIST_SUB+= BLAS="@comment " .else LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas Guilty part is `-lalapack and -lcblas' Another investigation: PentiumM(i386)+atlas hangs up following part --- @echo "tools:::makeLazyLoading(\"$(pkg)\")" | \ R_DEFAULT_PACKAGES=NULL LC_COLLATE=C $(R_EXE) --slave > /dev/null -- what is makeLazyLoading? I have no idea. thanks, -- NAKATA, Maho (maho@FreeBSD.org)