From owner-freebsd-pkg-fallout@FreeBSD.ORG Thu Oct 10 21:45:43 2013 Return-Path: Delivered-To: pkg-fallout@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTP id 30118BD for ; Thu, 10 Oct 2013 21:45:43 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy1.isc.freebsd.org (beefy1.isc.freebsd.org [IPv6:2001:4f8:3:ffe0:4072:0:16:38]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 0B53520B3 for ; Thu, 10 Oct 2013 21:45:43 +0000 (UTC) Received: from beefy1.isc.freebsd.org (localhost [127.0.0.1]) by beefy1.isc.freebsd.org (8.14.7/8.14.7) with ESMTP id r9ALjgVM011847 for ; Thu, 10 Oct 2013 21:45:42 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy1.isc.freebsd.org (8.14.7/8.14.7/Submit) id r9ALjgd8011818; Thu, 10 Oct 2013 21:45:42 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 10 Oct 2013 21:45:42 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201310102145.r9ALjgd8011818@beefy1.isc.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [REL - head-i386-default][biology/avida] Failed for avida-2.12.4 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 10 Oct 2013 21:45:43 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: bapt@FreeBSD.org Ident: $FreeBSD: head/biology/avida/Makefile 327709 2013-09-20 15:55:44Z bapt $ Log URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-10-10_05h56m46s/logs/avida-2.12.4.log Build URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-10-10_05h56m46s Log: ====>> Building biology/avida build started at Thu Oct 10 21:45:28 UTC 2013 port directory: /usr/ports/biology/avida building for: FreeBSD head-i386-default-job-01 10.0-ALPHA5 FreeBSD 10.0-ALPHA5 r256139 i386 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/avida/Makefile 327709 2013-09-20 15:55:44Z bapt $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1000055 UNAME_v=FreeBSD 10.0-ALPHA5 r256139 UNAME_r=10.0-ALPHA5 BLOCKSIZE=K MAIL=/var/mail/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref PKG_EXT=txz tpid=96474 POUDRIERE_BUILD_TYPE=bulk NBPARALLEL=24 PKGNG=1 PKGNAME=avida-2.12.4 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=head-i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for avida-2.12.4: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/lib:/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avida DOCSDIR=/usr/local/share/doc/avida EXAMPLESDIR=/usr/local/share/examples/avida WWWDIR=/usr/local/www/avida ETCDIR=/usr/local/etc/avida --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=yes ---End make.conf--- ===> Cleaning for avida-2.12.4 =================================================== =========================================================================== =================================================== ===> avida-2.12.4 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_7.txz Installing pkg-1.1.4_7... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of avida-2.12.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building => SHA256 Checksum OK for avida-2.12.4-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by avida-2.12.4 for building ===> Extracting for avida-2.12.4 => SHA256 Checksum OK for avida-2.12.4-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for avida-2.12.4 ===> Applying FreeBSD patches for avida-2.12.4 =========================================================================== =================================================== ===> avida-2.12.4 depends on file: /usr/local/bin/cmake - not found ===> Verifying install for /usr/local/bin/cmake in /usr/ports/devel/cmake ===> Installing existing package /packages/All/cmake-2.8.11.2.txz Installing cmake-2.8.11.2...Installing cmake-modules-2.8.11.2_1... done done ===> Returning to build of avida-2.12.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for avida-2.12.4 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/avida/work/.build -- The C compiler identification is Clang 3.3.0 -- The CXX compiler identification is Clang 3.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test HAVE_FUSED_MADD -- Performing Test HAVE_FUSED_MADD - Success -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/avida/work/.build =========================================================================== =================================================== ===> Building for avida-2.12.4 /usr/local/bin/cmake -H/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src -B/wrkdirs/usr/ports/biology/avida/work/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make libs/apto/src/CMakeFiles/aptoshared.dir/depend cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src /wrkdirs/usr/ports/biology/avida/work/.build /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src/CMakeFiles/aptoshared.dir/DependInfo.cmake Scanning dependencies of target aptoshared /usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make libs/apto/src/CMakeFiles/aptoshared.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles [ 0%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptoshared.dir/core/FileSystem.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 11 [ 1%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptoshared.dir/core/RefCount.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/RefCount.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles [ 1%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptoshared.dir/core/Thread.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/Thread.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 12 [ 2%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptoshared.dir/platform/Platform.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/platform/Platform.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles [ 2%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 13 [ 3%] Building CXX object libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -Daptoshared_EXPORTS -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -fPIC -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:1052:21: warning: unsequenced modification and access to 'idx_inc' [-Wunsequenced] while (row_diff[++idx_inc] == row_marginals[idx_inc]) ; ^ ~~~~~~~ 1 warning generated. Linking CXX shared library ../../../lib/libapto.so cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptoshared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -Wl,-rpath=/usr/lib:/usr/local/lib -shared -Wl,-soname,libapto.so -o ../../../lib/libapto.so CMakeFiles/aptoshared.dir/core/FileSystem.cc.o CMakeFiles/aptoshared.dir/core/RefCount.cc.o CMakeFiles/aptoshared.dir/core/Thread.cc.o CMakeFiles/aptoshared.dir/platform/Platform.cc.o CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -pthread -pthread /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 11 12 13 [ 3%] Built target aptoshared /usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make libs/apto/src/CMakeFiles/aptostatic.dir/depend cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src /wrkdirs/usr/ports/biology/avida/work/.build /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src/CMakeFiles/aptostatic.dir/DependInfo.cmake Scanning dependencies of target aptostatic /usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make libs/apto/src/CMakeFiles/aptostatic.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles [ 3%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptostatic.dir/core/FileSystem.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 14 [ 4%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptostatic.dir/core/RefCount.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/RefCount.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles [ 4%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptostatic.dir/core/Thread.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/Thread.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 15 [ 5%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptostatic.dir/platform/Platform.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/platform/Platform.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles [ 5%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 16 [ 6%] Building CXX object libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++ -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include -o CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc c++: warning: argument unused during compilation: '-mno-fused-madd' /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:1052:21: warning: unsequenced modification and access to 'idx_inc' [-Wunsequenced] while (row_diff[++idx_inc] == row_marginals[idx_inc]) ; ^ ~~~~~~~ 1 warning generated. Linking CXX static library ../../../lib/libapto.a cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/local/bin/cmake -P CMakeFiles/aptostatic.dir/cmake_clean_target.cmake cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptostatic.dir/link.txt --verbose=1 /usr/bin/ar cr ../../../lib/libapto.a CMakeFiles/aptostatic.dir/core/FileSystem.cc.o CMakeFiles/aptostatic.dir/core/RefCount.cc.o CMakeFiles/aptostatic.dir/core/Thread.cc.o CMakeFiles/aptostatic.dir/platform/Platform.cc.o CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o /usr/bin/ranlib ../../../lib/libapto.a /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 14 15 16 [ 6%] Built target aptostatic /usr/bin/make -f libs/apto/utils/unittest/googletest/CMakeFiles/gtest.dir/build.make libs/apto/utils/unittest/googletest/CMakeFiles/gtest.dir/depend cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest /wrkdirs/usr/ports/biology/avida/work/.build /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/utils/unittest/googletest /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/utils/unittest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake Scanning dependencies of target gtest /usr/bin/make -f libs/apto/utils/unittest/googletest/CMakeFiles/gtest.dir/build.make libs/apto/utils/unittest/googletest/CMakeFiles/gtest.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 91 [ 7%] Building CXX object libs/apto/utils/unittest/googletest/CMakeFiles/gtest.dir/gtest-death-test.cc.o cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/utils/unittest/googletest && /usr/bin/c++ -O2 -pipe -fno-strict-aliasing -mno-fused-madd -funroll-loops -fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG -I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include -o CMakeFiles/gtest.dir/gtest-death-test.cc.o -c /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/gtest-death-test.cc c++: warning: argument unused during compilation: '-mno-fused-madd' In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/gtest-death-test.cc:66: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-internal-inl.h:65: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/gtest.h:61: In file included from /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/gtest-param-test.h:163: /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2837:46: error: no member named 'tr1' in namespace 'std' : public ParamGeneratorInterface< ::std::tr1::tuple > { ~~~~~~~^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2837:57: error: 'T1' does not refer to a value : public ParamGeneratorInterface< ::std::tr1::tuple > { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2835:20: note: declared here template ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2837:65: error: expected class name : public ParamGeneratorInterface< ::std::tr1::tuple > { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2839:18: error: no member named 'tr1' in namespace 'std' typedef ::std::tr1::tuple ParamType; ~~~~~~~^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2839:28: error: expected member name or ';' after declaration specifiers typedef ::std::tr1::tuple ParamType; ~~~~~~~~~~~~~~~~~~~~~~~~~^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2846:34: error: use of undeclared identifier 'ParamType' virtual ParamIteratorInterface* Begin() const { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2849:34: error: use of undeclared identifier 'ParamType' virtual ParamIteratorInterface* End() const { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2854:50: error: use of undeclared identifier 'ParamType' class Iterator : public ParamIteratorInterface { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2854:61: error: expected class name class Iterator : public ParamIteratorInterface { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2856:44: error: use of undeclared identifier 'ParamType' Iterator(const ParamGeneratorInterface* base, ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2868:43: error: use of undeclared identifier 'ParamType' virtual const ParamGeneratorInterface* BaseGenerator() const { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2882:36: error: use of undeclared identifier 'ParamType' virtual ParamIteratorInterface* Clone() const { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2885:19: error: unknown type name 'ParamType' virtual const ParamType* Current() const { return ¤t_value_; } ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2886:54: error: use of undeclared identifier 'ParamType' virtual bool Equals(const ParamIteratorInterface& other) const { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2930:35: error: use of undeclared identifier 'ParamType' const ParamGeneratorInterface* const base_; ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2939:5: error: unknown type name 'ParamType' ParamType current_value_; ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2952:46: error: no member named 'tr1' in namespace 'std' : public ParamGeneratorInterface< ::std::tr1::tuple > { ~~~~~~~^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2952:57: error: 'T1' does not refer to a value : public ParamGeneratorInterface< ::std::tr1::tuple > { ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2950:20: note: declared here template ^ /wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/utils/unittest/googletest/include/gtest/internal/gtest-param-util-generated.h:2952:69: error: expected class name : public ParamGeneratorInterface< ::std::tr1::tuple > { ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build *** Error code 1 Stop. make: stopped in /usr/ports/biology/avida ===> Cleaning for avida-2.12.4