Date: Sun, 19 Oct 2014 07:38:12 +0000 (UTC) From: Marcus von Appen <mva@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r371171 - in head: benchmarks/pybench benchmarks/tsung biology/py-biopython biology/pycogent biology/pyfasta biology/python-nexus biology/seqan biology/velvet Message-ID: <201410190738.s9J7cC0n053894@svn.freebsd.org>
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Author: mva Date: Sun Oct 19 07:38:11 2014 New Revision: 371171 URL: https://svnweb.freebsd.org/changeset/ports/371171 QAT: https://qat.redports.org/buildarchive/r371171/ Log: - Convert ports from benchmarks/ and biology/ to new USES=python Approved by: portmgr (implicit) Modified: head/benchmarks/pybench/Makefile head/benchmarks/tsung/Makefile head/biology/py-biopython/Makefile head/biology/pycogent/Makefile head/biology/pyfasta/Makefile head/biology/python-nexus/Makefile head/biology/seqan/Makefile head/biology/velvet/Makefile Modified: head/benchmarks/pybench/Makefile ============================================================================== --- head/benchmarks/pybench/Makefile Sun Oct 19 07:33:09 2014 (r371170) +++ head/benchmarks/pybench/Makefile Sun Oct 19 07:38:11 2014 (r371171) @@ -11,8 +11,7 @@ COMMENT= Extensible benchmark suite for WRKSRC= ${WRKDIR}/${PORTNAME} -USES= zip -USE_PYTHON= yes +USES= python zip PORTDOCS= README Modified: head/benchmarks/tsung/Makefile ============================================================================== --- head/benchmarks/tsung/Makefile Sun Oct 19 07:33:09 2014 (r371170) +++ head/benchmarks/tsung/Makefile Sun Oct 19 07:38:11 2014 (r371171) @@ -15,10 +15,9 @@ BUILD_DEPENDS= erlc:${PORTSDIR}/lang/erl RUN_DEPENDS= erl:${PORTSDIR}/lang/erlang USE_PERL5= run -USE_PYTHON_RUN= yes GNU_CONFIGURE= yes -USES= gmake perl5 shebangfix +USES= gmake perl5 python:run shebangfix SHEBANG_FILES= src/*.pl.in src/tsung-plotter/tsung/tsung.py PLIST_SUB= PORTVERSION=${PORTVERSION} Modified: head/biology/py-biopython/Makefile ============================================================================== --- head/biology/py-biopython/Makefile Sun Oct 19 07:33:09 2014 (r371170) +++ head/biology/py-biopython/Makefile Sun Oct 19 07:38:11 2014 (r371171) @@ -14,9 +14,8 @@ COMMENT= Collection of Python modules fo BUILD_DEPENDS= ${PYNUMPY} RUN_DEPENDS= ${PYNUMPY} -USE_PYTHON= 2 -USE_PYDISTUTILS= yes -PYDISTUTILS_AUTOPLIST= yes +USES= python:2 +USE_PYTHON= distutils autoplist .if !defined(WITHOUT_REPORTLAB) RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}reportlab1>0:${PORTSDIR}/print/py-reportlab1 Modified: head/biology/pycogent/Makefile ============================================================================== --- head/biology/pycogent/Makefile Sun Oct 19 07:33:09 2014 (r371170) +++ head/biology/pycogent/Makefile Sun Oct 19 07:38:11 2014 (r371171) @@ -20,9 +20,7 @@ BUILD_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}sqlalchemy06>=0.5:${PORTSDIR}/databases/py-sqlalchemy06 RUN_DEPENDS:= ${BUILD_DEPENDS} -USE_PYTHON= yes -USE_PYDISTUTILS= yes -PYDISTUTILS_PKGNAME= cogent -PYDISTUTILS_AUTOPLIST= yes +USES= python +USE_PYTHON= distutils autoplist .include <bsd.port.mk> Modified: head/biology/pyfasta/Makefile ============================================================================== --- head/biology/pyfasta/Makefile Sun Oct 19 07:33:09 2014 (r371170) +++ head/biology/pyfasta/Makefile Sun Oct 19 07:38:11 2014 (r371171) @@ -15,8 +15,7 @@ LICENSE= MIT BUILD_DEPENDS= ${PYNUMPY} RUN_DEPENDS:= ${BUILD_DEPENDS} -USE_PYTHON= yes -USE_PYDISTUTILS= yes -PYDISTUTILS_AUTOPLIST= yes +USES= python +USE_PYTHON= distutils autoplist .include <bsd.port.mk> Modified: head/biology/python-nexus/Makefile ============================================================================== --- head/biology/python-nexus/Makefile Sun Oct 19 07:33:09 2014 (r371170) +++ head/biology/python-nexus/Makefile Sun Oct 19 07:38:11 2014 (r371171) @@ -10,8 +10,7 @@ MASTER_SITES= CHEESESHOP MAINTAINER= wen@FreeBSD.org COMMENT= Generic nexus file format reader for python -USE_PYTHON= yes -USE_PYDISTUTILS= yes -PYDISTUTILS_AUTOPLIST= yes +USES= python +USE_PYTHON= distutils autoplist .include <bsd.port.mk> Modified: head/biology/seqan/Makefile ============================================================================== --- head/biology/seqan/Makefile Sun Oct 19 07:33:09 2014 (r371170) +++ head/biology/seqan/Makefile Sun Oct 19 07:38:11 2014 (r371171) @@ -16,9 +16,8 @@ LICENSE_COMB= multi LICENSE_FILE_BSD=${WRKSRC}/seqan/LICENSE LICENSE_FILE_GPLv3=${WRKSRC}/apps/LICENSE -USES= cmake:outsource zip +USES= cmake:outsource python:build zip CMAKE_SOURCE_PATH=${WRKSRC}/cmake -USE_PYTHON_BUILD=yes MAKE_JOB_SAFE= yes SUB_FILES= pkg-message Modified: head/biology/velvet/Makefile ============================================================================== --- head/biology/velvet/Makefile Sun Oct 19 07:33:09 2014 (r371170) +++ head/biology/velvet/Makefile Sun Oct 19 07:38:11 2014 (r371171) @@ -43,7 +43,7 @@ PERLMOD_FILES= contrib/VelvetOptimiser-2 contrib/VelvetOptimiser-2.2.4/VelvetOpt/hwrap.pm .if !defined(WITHOUT_PYTHON) -USE_PYTHON= yes +USES+= python SHEBANG_FILES+= contrib/AssemblyAssembler1.3/AssemblyAssembler1.3.py .endif
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