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Date:      Mon, 20 Aug 2018 19:00:28 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv6-default][biology/libsbml] Failed for libsbml-5.17.0 in build
Message-ID:  <201808201900.w7KJ0S3E031092@beefy8.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     ports@FreeBSD.org
Last committer: wen@FreeBSD.org
Ident:          $FreeBSD: head/biology/libsbml/Makefile 473289 2018-06-25 01:37:52Z wen $
Log URL:        http://beefy8.nyi.freebsd.org/data/head-armv6-default/p477468_s337991/logs/libsbml-5.17.0.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p477468_s337991
Log:

=>> Building biology/libsbml
build started at Mon Aug 20 18:56:57 UTC 2018
port directory: /usr/ports/biology/libsbml
package name: libsbml-5.17.0
building for: FreeBSD head-armv6-default-job-23 12.0-ALPHA2 FreeBSD 12.0-ALPHA2 1200078 arm
maintained by: ports@FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/libsbml/Makefile 473289 2018-06-25 01:37:52Z wen $
Poudriere version: 3.2.7-2-g1cf194be
Host OSVERSION: 1200069
Jail OSVERSION: 1200078
Job Id: 23




!!! Jail is newer than host. (Jail: 1200078, Host: 1200069) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
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UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200078
UNAME_v=FreeBSD 12.0-ALPHA2 1200078
UNAME_r=12.0-ALPHA2
BLOCKSIZE=K
MAIL=/var/mail/root
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HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for libsbml-5.17.0:
     EXAMPLES=on: Build and/or install examples
     PYTHON=off: Python bindings or support
     RUBY=off: Ruby bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
ports@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work  HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/libsbml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work  HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/libsbml/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/libsbml/work/stage PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-DLIBICONV_PLUG"  LDFLAGS=" -L/usr/lib" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTVERSION=5.17.0 PORTDOCS="" PORTEXAMPLES="" EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="@comment " NO_PYTHON="" RUBY="@comment " NO_RUBY="" CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0"  GTK3_VERSION="3.0.0" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libsbml"  EXAMPLESDIR="share/examples/libsbml"  DATADIR="share/libsbml"  WWWDIR="www/libsbml"  ETCDIR="etc/libsbml"
--End PLIST_SUB--

--SUB_LIST--
EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="@comment " NO_PYTHON="" RUBY="@comment " NO_RUBY="" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/libsbml DOCSDIR=/usr/local/share/doc/libsbml EXAMPLESDIR=/usr/local/share/examples/libsbml  WWWDIR=/usr/local/www/libsbml ETCDIR=/usr/local/etc/libsbml
--End SUB_LIST--

---Begin make.conf---
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USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
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MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv6-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
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_CXXINTERNAL_9c45a5b1=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv6-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=yes
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=yes
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=yes
CC_OUTPUT_9d218390_f00456e5=yes
CC_OUTPUT_9d218390_65ad290d=yes
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CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=yes
CC_OUTPUT_9d218390_160933ec=yes
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OSREL=12.0
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#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
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NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>   NOTICE:

The libsbml port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:
<snip>
-- Check for working C compiler: /nxb-bin/usr/bin/cc
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compile features
-- Detecting C compile features - done
-- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR) 
-- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so - found
-- Looking for gzopen in /usr/lib/libz.so
-- Looking for gzopen in /usr/lib/libz.so - found
-- Looking for include file check.h
-- Looking for include file check.h - not found
-- Looking for include file expat.h
-- Looking for include file expat.h - not found
-- Looking for include file errno.h
-- Looking for include file errno.h - found
-- Looking for include file ieeefp.h
-- Looking for include file ieeefp.h - found
-- Looking for include file math.h
-- Looking for include file math.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for include file float.h
-- Looking for include file float.h - found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for sqrt in m
-- Looking for sqrt in m - found
-- 
----------------------------------------------------------------------
libSBML version 5.17.0
----------------------------------------------------------------------

   More information and the latest version are available online at
   http://sbml.org/Software/libSBML

   Please report problems using the issue tracker at
   http://sbml.org/Software/libsbml/issue-tracker

   To contact the developers directly, email libsbml-team@googlegroups.com

   Configured on host 'head-armv6-default-job-23'
     host type                       = FreeBSD
     host operating system           = FreeBSD 12.0-ALPHA2
     host CPU architecture           = armv6

   General build flags:
     CC                              = /nxb-bin/usr/bin/cc
     CXX                             = /nxb-bin/usr/bin/c++
     CPPFLAGS                        =  -DLINUX
     CFLAGS                          = -O2 -pipe  -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing -fno-strict-aliasing -fPIC
     CXXFLAGS                        = -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC
     LDFLAGS                         =  -L/usr/lib

   XML parser library configuration:
     XML library                     = libxml2
     CPPFLAGS for XML                = -I/usr/local/include/libxml2
     LIBS for XML                    = /usr/local/lib/libxml2.so

   Other libSBML configuration settings:
     Installation $prefix            = /usr/local
--      Value of $LD_LIBRARY_PATH       = 
--      Using SWIG                      = SWIG_EXECUTABLE-NOTFOUND (Version )
--      Using C++ namespace ('libsbml') = no
-- 
--      Build examples                  = no
-- 
--      Use Legacy Math                 = no
-- 
--    Support for SBML Level 3 Packages: 
--      SBML 'layout' package  = OFF
-- 

-- Other potentially important settings:
--   Compression support is enabled for .zip and .gz files
--   Compression support is enabled for .bz2 files
-- 
----------------------------------------------------------------------
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_COLOR_MAKEFILE
    CMAKE_CXX_FLAGS_DEBUG
    CMAKE_C_FLAGS_DEBUG
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    ICONV_INCLUDE_DIR
    ICONV_LIBRARIES
    ICONV_LIBRARY
    LIBICONV_INCLUDE_DIR
    LIBICONV_LIBRARIES
    LIBICONV_LIBRARY
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: /wrkdirs/usr/ports/biology/libsbml/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for libsbml-5.17.0
[1/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/annotation/CVTerm.cpp
[2/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/annotation/Date.cpp
[3/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/annotation/ModelCreator.cpp
[4/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/annotation/ModelHistory.cpp
[5/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/annotation/RDFAnnotationParser.cpp
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[47/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/KineticLaw.cpp
[48/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/ListOf.cpp
[49/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/LocalParameter.cpp
[50/465] /nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/Model.cpp
FAILED: src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o 
/nxb-bin/usr/bin/c++  -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_LIBXML -DUSE_ZLIB -Isrc/src/sbml -Isrc/src -Isrc -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml -I/usr/local/include/libxml2 -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -fno-strict-aliasing -fPIC -O2 -pipe -I/usr/include -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -MF src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o.d -o src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/Model.cpp
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/Model.cpp:41:
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLDocument.h:298:
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLTransforms.h:48:
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/FunctionDefinition.h:129:
In file included from /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBO.h:207:
/usr/include/c++/v1/map:629:15: error: object of type 'std::__1::pair<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>' cannot be assigned because its copy assignment operator is implicitly deleted
        {__nc = __v.__cc; return *this;}
              ^
/usr/include/c++/v1/__tree:1645:35: note: in instantiation of member function 'std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>::operator=' requested here
                __cache->__value_ = *__first;
                                  ^
/usr/include/c++/v1/__tree:1575:9: note: in instantiation of function template specialization 'std::__1::__tree<std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>, std::__1::__map_value_compare<std::__1::pair<const std::__1::basic_string<char>, int>, std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>, std::__1::less<std::__1::pair<const std::__1::basic_string<char>, int> >, true>, std::__1::allocator<std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *> > >::__assign_multi<std::__1::__tree_const_iterator<std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>, std::__1::__tree_node<std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>, void *> *, int> >' requested here
        __assign_multi(__t.begin(), __t.end());
        ^
/usr/include/c++/v1/map:912:21: note: in instantiation of member function 'std::__1::__tree<std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>, std::__1::__map_value_compare<std::__1::pair<const std::__1::basic_string<char>, int>, std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>, std::__1::less<std::__1::pair<const std::__1::basic_string<char>, int> >, true>, std::__1::allocator<std::__1::__value_type<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *> > >::operator=' requested here
            __tree_ = __m.__tree_;
                    ^
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/Model.cpp:243:19: note: in instantiation of member function 'std::__1::map<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *, std::__1::less<std::__1::pair<const std::__1::basic_string<char>, int> >, std::__1::allocator<std::__1::pair<const std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *> > >::operator=' requested here
    mUnitsDataMap = rhs.mUnitsDataMap;
                  ^
/usr/include/c++/v1/utility:325:5: note: copy assignment operator is implicitly deleted because 'pair<std::__1::pair<const std::__1::basic_string<char>, int>, FormulaUnitsData *>' has a user-declared move constructor
    pair(pair&&) = default;
    ^
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/libsbml



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