Date: Tue, 15 Dec 2020 10:06:23 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 121arm64-quarterly][biology/bowtie2] Failed for bowtie2-2.4.1_2 in build Message-ID: <202012151006.0BFA6N3P061398@ampere1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: martymac@FreeBSD.org Ident: $FreeBSD: branches/2020Q4/biology/bowtie2/Makefile 542423 2020-07-17 10:12:25Z martymac $ Log URL: http://ampere1.nyi.freebsd.org/data/121arm64-quarterly/558117/logs/bowtie2-2.4.1_2.log Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=121arm64-quarterly&build=558117 Log: =>> Building biology/bowtie2 build started at Tue Dec 15 10:05:36 UTC 2020 port directory: /usr/ports/biology/bowtie2 package name: bowtie2-2.4.1_2 building for: FreeBSD 121arm64-quarterly-job-09 12.1-RELEASE FreeBSD 12.1-RELEASE arm64 maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: branches/2020Q4/biology/bowtie2/Makefile 542423 2020-07-17 10:12:25Z martymac $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300121 Jail OSVERSION: 1201000 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1201000 UNAME_v=FreeBSD 12.1-RELEASE UNAME_r=12.1-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/121arm64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/121arm64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=121arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/121arm64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for bowtie2-2.4.1_2: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bowtie2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bowtie2/work HOME=/wrkdirs/usr/ports/biology/bowtie2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bowtie2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bowtie2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bowtie2/work HOME=/wrkdirs/usr/ports/biology/bowtie2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bowtie2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.0 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/bowtie2" EXAMPLESDIR="share/examples/bowtie2" DATADIR="share/bowtie2" WWWDIR="www/bowtie2" ETCDIR="etc/bowtie2" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bowtie2 DOCSDIR=/usr/local/share/doc/bowtie2 EXAMPLESDIR=/usr/local/share/examples/bowtie2 WWWDIR=/usr/local/www/bowtie2 ETCDIR=/usr/local/etc/bowtie2 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=12.1-RELEASE OSREL=12.1 OSVERSION=1201000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3+ accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> bowtie2-2.4.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.15.10.txz [121arm64-quarterly-job-09] Installing pkg-1.15.10... [121arm64-quarterly-job-09] Extracting pkg-1.15.10: .......... done ===> bowtie2-2.4.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of bowtie2-2.4.1_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by bowtie2-2.4.1_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by bowtie2-2.4.1_2 for building => SHA256 Checksum OK for BenLangmead-bowtie2-v2.4.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by bowtie2-2.4.1_2 for building ===> Extracting for bowtie2-2.4.1_2 => SHA256 Checksum OK for BenLangmead-bowtie2-v2.4.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for bowtie2-2.4.1_2 ===> Applying FreeBSD patches for bowtie2-2.4.1_2 from /usr/ports/biology/bowtie2/files =========================================================================== =======================<phase: build-depends >============================ ===> bowtie2-2.4.1_2 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.txz [121arm64-quarterly-job-09] Installing gmake-4.3_2... [121arm64-quarterly-job-09] `-- Installing gettext-runtime-0.21... [121arm64-quarterly-job-09] | `-- Installing indexinfo-0.3.1... [121arm64-quarterly-job-09] | `-- Extracting indexinfo-0.3.1: .... done [121arm64-quarterly-job-09] `-- Extracting gettext-runtime-0.21: .......... done [121arm64-quarterly-job-09] Extracting gmake-4.3_2: .......... done ===> bowtie2-2.4.1_2 depends on package: gmake>=4.3 - found ===> Returning to build of bowtie2-2.4.1_2 ===> bowtie2-2.4.1_2 depends on file: /usr/local/bin/python3.7 - not found ===> Installing existing package /packages/All/python37-3.7.9.txz [121arm64-quarterly-job-09] Installing python37-3.7.9... [121arm64-quarterly-job-09] `-- Installing libffi-3.3_1... [121arm64-quarterly-job-09] `-- Extracting libffi-3.3_1: .......... done [121arm64-quarterly-job-09] `-- Installing readline-8.0.4... [121arm64-quarterly-job-09] `-- Extracting readline-8.0.4: .......... done [121arm64-quarterly-job-09] Extracting python37-3.7.9: .......... done ===== Message from python37-3.7.9: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> bowtie2-2.4.1_2 depends on file: /usr/local/bin/python3.7 - found ===> Returning to build of bowtie2-2.4.1_2 =========================================================================== =======================<phase: lib-depends >============================ ===> bowtie2-2.4.1_2 depends on shared library: libtbb.so - not found ===> Installing existing package /packages/All/tbb-2020.3.txz [121arm64-quarterly-job-09] Installing tbb-2020.3... [121arm64-quarterly-job-09] Extracting tbb-2020.3: .......... done ===> bowtie2-2.4.1_2 depends on shared library: libtbb.so - found (/usr/local/lib/libtbb.so) ===> Returning to build of bowtie2-2.4.1_2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for bowtie2-2.4.1_2 =========================================================================== =======================<phase: build >============================ ===> Building for bowtie2-2.4.1_2 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/bowtie2/work/bowtie2-2.4.1' usage: dirname string [...] c++ -DCOMPILER_OPTIONS="\" -fopenmp-simd\"" -fopenmp-simd \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`c++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \ -Ithird_party/simde \ -o bowtie2-build-s bt2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \ -fstack-protector-strong -L/usr/local/lib -lz -lpthread -ltbb -ltbbmalloc c++ -DCOMPILER_OPTIONS="\" -fopenmp-simd\"" -fopenmp-simd \ -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"\"" -DBUILD_TIME="\"`date -u`\"" -DCOMPILER_VERSION="\"`c++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ -Ithird_party/simde \ -o bowtie2-build-l bt2_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp diff_sample.cpp bowtie_build_main.cpp \ -fstack-protector-strong -L/usr/local/lib -lz -lpthread -ltbb -ltbbmalloc ldld: : error: error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<SString<char> >::~KarkkainenBlockwiseSA())undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<SString<char> >::~KarkkainenBlockwiseSA()) ldld: error: : undefined symbol: tthread::thread::~thread() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<SString<char> >::~KarkkainenBlockwiseSA())error: undefined symbol: tthread::thread::~thread() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<SString<char> >::~KarkkainenBlockwiseSA()) ldld: : error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<SString<char> >::nextSuffix())error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<SString<char> >::nextSuffix()) ld: error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(DifferenceCoverSample<SString<char> >::build(int)) ld: error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(DifferenceCoverSample<SString<char> >::build(int))ld : error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(DifferenceCoverSample<SString<char> >::build(int)) ld: error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(DifferenceCoverSample<SString<char> >::build(int)) ld: error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<SString<char> >::buildSamples()) ld: error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<SString<char> >::buildSamples())ld: error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<SString<char> >::buildSamples()) ld: error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<SString<char> >::buildSamples()) ld: error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<S2bDnaString>::~KarkkainenBlockwiseSA()) ldld: : error: error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<S2bDnaString>::~KarkkainenBlockwiseSA())undefined symbol: tthread::thread::~thread() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<S2bDnaString>::~KarkkainenBlockwiseSA()) ld: error: ldundefined symbol: tthread::thread::~thread() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<S2bDnaString>::~KarkkainenBlockwiseSA()): error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<S2bDnaString>::nextSuffix()) ld: error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<S2bDnaString>::nextSuffix()) ld: error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(DifferenceCoverSample<S2bDnaString>::build(int)) ldld: : error: error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(DifferenceCoverSample<S2bDnaString>::build(int))undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(DifferenceCoverSample<S2bDnaString>::build(int)) ld: error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(DifferenceCoverSample<S2bDnaString>::build(int)) ld: error: undefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<S2bDnaString>::buildSamples()) ld: error: ldundefined symbol: tthread::thread::thread(void (*)(void*), void*) >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<S2bDnaString>::buildSamples()) : error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-d58142.o:(KarkkainenBlockwiseSA<S2bDnaString>::buildSamples())ld: error: undefined symbol: tthread::thread::join() >>> referenced by bt2_build.cpp >>> /tmp/bt2_build-c8d8c4.o:(KarkkainenBlockwiseSA<S2bDnaString>::buildSamples()) c++: c++error: : error: linker command failed with exit code 1 (use -v to see invocation)linker command failed with exit code 1 (use -v to see invocation) gmake[1]: *** [Makefile:353: bowtie2-build-l] Error 1 gmake[1]: *** Waiting for unfinished jobs.... gmake[1]: *** [Makefile:345: bowtie2-build-s] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/bowtie2/work/bowtie2-2.4.1' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/bowtie2
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