Date: Tue, 5 Nov 2019 17:12:28 GMT From: pkg-fallout@FreeBSD.org To: jwb@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-i386-default][biology/plinkseq] Failed for plinkseq-0.10_1 in build Message-ID: <201911051712.xA5HCSAm099227@beefy17.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: jwb@FreeBSD.org Ident: $FreeBSD: head/biology/plinkseq/Makefile 460452 2018-01-31 01:07:07Z jwb $ Log URL: http://beefy17.nyi.freebsd.org/data/head-i386-default/p516763_s354345/logs/plinkseq-0.10_1.log Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p516763_s354345 Log: =>> Building biology/plinkseq build started at Tue Nov 5 17:04:24 UTC 2019 port directory: /usr/ports/biology/plinkseq package name: plinkseq-0.10_1 building for: FreeBSD head-i386-default-job-10 13.0-CURRENT FreeBSD 13.0-CURRENT 1300055 i386 maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/biology/plinkseq/Makefile 460452 2018-01-31 01:07:07Z jwb $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300047 Jail OSVERSION: 1300055 Job Id: 10 !!! Jail is newer than host. (Jail: 1300055, Host: 1300047) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1300055 UNAME_v=FreeBSD 13.0-CURRENT 1300055 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/plinkseq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/plinkseq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/plinkseq" EXAMPLESDIR="share/examples/plinkseq" DATADIR="share/plinkseq" WWWDIR="www/plinkseq" ETCDIR="etc/plinkseq" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/plinkseq DOCSDIR=/usr/local/share/doc/plinkseq EXAMPLESDIR=/usr/local/share/examples/plinkseq WWWDIR=/usr/local/www/plinkseq ETCDIR=/usr/local/etc/plinkseq --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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[head-i386-default-job-10] Extracting pkg-1.12.0: .......... done ===> plinkseq-0.10_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of plinkseq-0.10_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by plinkseq-0.10_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by plinkseq-0.10_1 for building => SHA256 Checksum OK for plinkseq-src-0.10.tgz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by plinkseq-0.10_1 for building ===> Extracting for plinkseq-0.10_1 => SHA256 Checksum OK for plinkseq-src-0.10.tgz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for plinkseq-0.10_1 ===> Applying FreeBSD patches for plinkseq-0.10_1 /usr/bin/sed -i.bak -e 's|PF_INET|AF_INET|g' /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/mongoose/sources/lib/mongoose.c /usr/bin/sed -i.bak -e 's|g++|c++|g' -e 's|gcc|cc|g' -e 's|CXXFLAGS = -O3|CXXFLAGS = -O2 -pipe -fstack-protector-strong -fno-strict-aliasing |g' -e 's|ALL_CFLAGS =-O3|ALL_CFLAGS = -O2 -pipe -fstack-protector-strong -fno-strict-aliasing |g' /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/config_defs.Makefile /usr/bin/sed -i.bak -e 's| -ldl||g' -e 's| $(STATIC_FLAG)||g' /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/Makefile =========================================================================== =======================<phase: build-depends >============================ ===> plinkseq-0.10_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [head-i386-default-job-10] Installing gmake-4.2.1_3... <snip> In file included from google/protobuf/compiler/java/java_message.cc:50: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ mv -f .deps/java_helpers.Tpo .deps/java_helpers.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF .deps/java_message_field.Tpo -c -o java_message_field.lo `test -f 'google/protobuf/compiler/java/java_message_field.cc' || echo './'`google/protobuf/compiler/java/java_message_field.cc libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF .deps/java_message_field.Tpo -c google/protobuf/compiler/java/java_message_field.cc -fPIC -DPIC -o .libs/java_message_field.o 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_message.lo -MD -MP -MF .deps/java_message.Tpo -c google/protobuf/compiler/java/java_message.cc -o java_message.o >/dev/null 2>&1 In file included from google/protobuf/compiler/java/java_message_field.cc:43: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF .deps/java_message_field.Tpo -c google/protobuf/compiler/java/java_message_field.cc -o java_message_field.o >/dev/null 2>&1 mv -f .deps/java_message_field.Tpo .deps/java_message_field.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF .deps/java_primitive_field.Tpo -c -o java_primitive_field.lo `test -f 'google/protobuf/compiler/java/java_primitive_field.cc' || echo './'`google/protobuf/compiler/java/java_primitive_field.cc libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF .deps/java_primitive_field.Tpo -c google/protobuf/compiler/java/java_primitive_field.cc -fPIC -DPIC -o .libs/java_primitive_field.o mv -f .deps/java_message.Tpo .deps/java_message.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo -c -o java_service.lo `test -f 'google/protobuf/compiler/java/java_service.cc' || echo './'`google/protobuf/compiler/java/java_service.cc libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo -c google/protobuf/compiler/java/java_service.cc -fPIC -DPIC -o .libs/java_service.o In file included from google/protobuf/compiler/java/java_primitive_field.cc:44: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ In file included from google/protobuf/compiler/java/java_service.cc:40: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF .deps/java_primitive_field.Tpo -c google/protobuf/compiler/java/java_primitive_field.cc -o java_primitive_field.o >/dev/null 2>&1 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo -c google/protobuf/compiler/java/java_service.cc -o java_service.o >/dev/null 2>&1 mv -f .deps/java_service.Tpo .deps/java_service.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF .deps/java_string_field.Tpo -c -o java_string_field.lo `test -f 'google/protobuf/compiler/java/java_string_field.cc' || echo './'`google/protobuf/compiler/java/java_string_field.cc mv -f .deps/java_primitive_field.Tpo .deps/java_primitive_field.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF .deps/java_doc_comment.Tpo -c -o java_doc_comment.lo `test -f 'google/protobuf/compiler/java/java_doc_comment.cc' || echo './'`google/protobuf/compiler/java/java_doc_comment.cc libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF .deps/java_string_field.Tpo -c google/protobuf/compiler/java/java_string_field.cc -fPIC -DPIC -o .libs/java_string_field.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF .deps/java_doc_comment.Tpo -c google/protobuf/compiler/java/java_doc_comment.cc -fPIC -DPIC -o .libs/java_doc_comment.o In file included from google/protobuf/compiler/java/java_doc_comment.cc:40: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ In file included from google/protobuf/compiler/java/java_string_field.cc:45: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF .deps/java_doc_comment.Tpo -c google/protobuf/compiler/java/java_doc_comment.cc -o java_doc_comment.o >/dev/null 2>&1 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF .deps/java_string_field.Tpo -c google/protobuf/compiler/java/java_string_field.cc -o java_string_field.o >/dev/null 2>&1 mv -f .deps/java_doc_comment.Tpo .deps/java_doc_comment.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT python_generator.lo -MD -MP -MF .deps/python_generator.Tpo -c -o python_generator.lo `test -f 'google/protobuf/compiler/python/python_generator.cc' || echo './'`google/protobuf/compiler/python/python_generator.cc libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT python_generator.lo -MD -MP -MF .deps/python_generator.Tpo -c google/protobuf/compiler/python/python_generator.cc -fPIC -DPIC -o .libs/python_generator.o In file included from google/protobuf/compiler/python/python_generator.cc:59: ./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_int64_is_not_sizeof_long_long); ^ ./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef] sizeof_uint64_is_not_sizeof_long_long); ^ mv -f .deps/java_string_field.Tpo .deps/java_string_field.Plo /bin/sh ../libtool --tag=CXX --mode=link c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -version-info 8:0:0 -export-dynamic -no-undefined -fstack-protector-strong -o libprotobuf.la -rpath /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib atomicops_internals_x86_gcc.lo atomicops_internals_x86_msvc.lo common.lo once.lo stringprintf.lo extension_set.lo generated_message_util.lo message_lite.lo repeated_field.lo wire_format_lite.lo coded_stream.lo zero_copy_stream.lo zero_copy_stream_impl_lite.lo strutil.lo substitute.lo structurally_valid.lo descriptor.lo descriptor.pb.lo descriptor_database.lo dynamic_message.lo extension_set_heavy.lo generated_message_reflection.lo message.lo reflection_ops.lo service.lo text_format.lo unknown_field_set.lo wire_format.lo gzip_stream.lo printer.lo tokenizer.lo zero_copy_stream_impl.lo importer.lo parser.lo -lpt hread -lz libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o .libs/atomicops_internals_x86_gcc.o .libs/atomicops_internals_x86_msvc.o .libs/common.o .libs/once.o .libs/stringprintf.o .libs/extension_set.o .libs/generated_message_util.o .libs/message_lite.o .libs/repeated_field.o .libs/wire_format_lite.o .libs/coded_stream.o .libs/zero_copy_stream.o .libs/zero_copy_stream_impl_lite.o .libs/strutil.o .libs/substitute.o .libs/structurally_valid.o .libs/descriptor.o .libs/descriptor.pb.o .libs/descriptor_database.o .libs/dynamic_message.o .libs/extension_set_heavy.o .libs/generated_message_reflection.o .libs/message.o .libs/reflection_ops.o .libs/service.o .libs/text_format.o .libs/unknown_field_set.o .libs/wire_format.o .libs/gzip_stream.o .libs/printer.o .libs/tokenizer.o .libs/zero_copy_stream_impl.o .libs/importer.o .libs/parser.o -lpthread -lz -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o -pthread -O2 -fstack-protector-strong -fstack-protector-strong -pthread -Wl,-soname -Wl,libprotobuf.so.8 -o .libs/libprotobuf.so.8.0.0 clang-cpp: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang-cpp: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libprotobuf.so.8" && ln -s "libprotobuf.so.8.0.0" "libprotobuf.so.8") libtool: link: (cd ".libs" && rm -f "libprotobuf.so" && ln -s "libprotobuf.so.8.0.0" "libprotobuf.so") libtool: link: ar cru .libs/libprotobuf.a atomicops_internals_x86_gcc.o atomicops_internals_x86_msvc.o common.o once.o stringprintf.o extension_set.o generated_message_util.o message_lite.o repeated_field.o wire_format_lite.o coded_stream.o zero_copy_stream.o zero_copy_stream_impl_lite.o strutil.o substitute.o structurally_valid.o descriptor.o descriptor.pb.o descriptor_database.o dynamic_message.o extension_set_heavy.o generated_message_reflection.o message.o reflection_ops.o service.o text_format.o unknown_field_set.o wire_format.o gzip_stream.o printer.o tokenizer.o zero_copy_stream_impl.o importer.o parser.o libtool: link: ranlib .libs/libprotobuf.a libtool: link: ( cd ".libs" && rm -f "libprotobuf.la" && ln -s "../libprotobuf.la" "libprotobuf.la" ) 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT python_generator.lo -MD -MP -MF .deps/python_generator.Tpo -c google/protobuf/compiler/python/python_generator.cc -o python_generator.o >/dev/null 2>&1 mv -f .deps/python_generator.Tpo .deps/python_generator.Plo /bin/sh ../libtool --tag=CXX --mode=link c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -version-info 8:0:0 -export-dynamic -no-undefined -fstack-protector-strong -o libprotoc.la -rpath /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib code_generator.lo command_line_interface.lo plugin.lo plugin.pb.lo subprocess.lo zip_writer.lo cpp_enum.lo cpp_enum_field.lo cpp_extension.lo cpp_field.lo cpp_file.lo cpp_generator.lo cpp_helpers.lo cpp_message.lo cpp_message_field.lo cpp_primitive_field.lo cpp_service.lo cpp_string_field.lo java_enum.lo java_enum_field.lo java_extension.lo java_field.lo java_file.lo java_generator.lo java_helpers.lo java_message.lo java_message_field.lo java_primitive_field.lo java_service.lo java_string_field.lo java_doc_comment.lo python_generator.lo -lpthread libprotobuf.la -lz libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o .libs/code_generator.o .libs/command_line_interface.o .libs/plugin.o .libs/plugin.pb.o .libs/subprocess.o .libs/zip_writer.o .libs/cpp_enum.o .libs/cpp_enum_field.o .libs/cpp_extension.o .libs/cpp_field.o .libs/cpp_file.o .libs/cpp_generator.o .libs/cpp_helpers.o .libs/cpp_message.o .libs/cpp_message_field.o .libs/cpp_primitive_field.o .libs/cpp_service.o .libs/cpp_string_field.o .libs/java_enum.o .libs/java_enum_field.o .libs/java_extension.o .libs/java_field.o .libs/java_file.o .libs/java_generator.o .libs/java_helpers.o .libs/java_message.o .libs/java_message_field.o .libs/java_primitive_field.o .libs/java_service.o .libs/java_string_field.o .libs/java_doc_comment.o .libs/python_generator.o -Wl,-rpath -Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/src/.libs -Wl,-rpath -Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib -lpthread ./.libs/libprotobuf.so -lz -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o -pthread -O2 -fstack-protector-strong -fstack-protector-strong -pthread -Wl,-soname -Wl,libprotoc.so.8 -o .libs/libprotoc.so.8.0.0 clang-cpp: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang-cpp: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libprotoc.so.8" && ln -s "libprotoc.so.8.0.0" "libprotoc.so.8") libtool: link: (cd ".libs" && rm -f "libprotoc.so" && ln -s "libprotoc.so.8.0.0" "libprotoc.so") libtool: link: ar cru .libs/libprotoc.a code_generator.o command_line_interface.o plugin.o plugin.pb.o subprocess.o zip_writer.o cpp_enum.o cpp_enum_field.o cpp_extension.o cpp_field.o cpp_file.o cpp_generator.o cpp_helpers.o cpp_message.o cpp_message_field.o cpp_primitive_field.o cpp_service.o cpp_string_field.o java_enum.o java_enum_field.o java_extension.o java_field.o java_file.o java_generator.o java_helpers.o java_message.o java_message_field.o java_primitive_field.o java_service.o java_string_field.o java_doc_comment.o python_generator.o libtool: link: ranlib .libs/libprotoc.a libtool: link: ( cd ".libs" && rm -f "libprotoc.la" && ln -s "../libprotoc.la" "libprotoc.la" ) /bin/sh ../libtool --tag=CXX --mode=link c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector-strong -o protoc main.o -lpthread libprotobuf.la libprotoc.la -lz libtool: link: c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector-strong -o .libs/protoc main.o -lpthread ./.libs/libprotobuf.so ./.libs/libprotoc.so -lz -pthread -Wl,-rpath -Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib oldpwd=`pwd` && ( cd . && $oldpwd/protoc -I. --cpp_out=$oldpwd google/protobuf/unittest.proto google/protobuf/unittest_empty.proto google/protobuf/unittest_import.proto google/protobuf/unittest_import_public.proto google/protobuf/unittest_mset.proto google/protobuf/unittest_optimize_for.proto google/protobuf/unittest_embed_optimize_for.proto google/protobuf/unittest_custom_options.proto google/protobuf/unittest_lite.proto google/protobuf/unittest_import_lite.proto google/protobuf/unittest_import_public_lite.proto google/protobuf/unittest_lite_imports_nonlite.proto google/protobuf/unittest_no_generic_services.proto google/protobuf/compiler/cpp/cpp_test_bad_identifiers.proto ) touch unittest_proto_middleman gmake all-am gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' /bin/sh ../libtool --tag=CXX --mode=link c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -version-info 8:0:0 -export-dynamic -no-undefined -fstack-protector-strong -o libprotobuf-lite.la -rpath /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib atomicops_internals_x86_gcc.lo atomicops_internals_x86_msvc.lo common.lo once.lo stringprintf.lo extension_set.lo generated_message_util.lo message_lite.lo repeated_field.lo wire_format_lite.lo coded_stream.lo zero_copy_stream.lo zero_copy_stream_impl_lite.lo -lpthread -lz libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o .libs/atomicops_internals_x86_gcc.o .libs/atomicops_internals_x86_msvc.o .libs/common.o .libs/once.o .libs/stringprintf.o .libs/extension_set.o .libs/generated_message_util.o .libs/message_lite.o .libs/repeated_field.o .libs/wire_format_lite.o .libs/coded_stream.o .libs/zero_copy_stream.o .libs/zero_copy_stream_impl_lite.o -lpthread -lz -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o -pthread -O2 -fstack-protector-strong -fstack-protector-strong -pthread -Wl,-soname -Wl,libprotobuf-lite.so.8 -o .libs/libprotobuf-lite.so.8.0.0 clang-cpp: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang-cpp: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libprotobuf-lite.so.8" && ln -s "libprotobuf-lite.so.8.0.0" "libprotobuf-lite.so.8") libtool: link: (cd ".libs" && rm -f "libprotobuf-lite.so" && ln -s "libprotobuf-lite.so.8.0.0" "libprotobuf-lite.so") libtool: link: ar cru .libs/libprotobuf-lite.a atomicops_internals_x86_gcc.o atomicops_internals_x86_msvc.o common.o once.o stringprintf.o extension_set.o generated_message_util.o message_lite.o repeated_field.o wire_format_lite.o coded_stream.o zero_copy_stream.o zero_copy_stream_impl_lite.o libtool: link: ranlib .libs/libprotobuf-lite.a libtool: link: ( cd ".libs" && rm -f "libprotobuf-lite.la" && ln -s "../libprotobuf-lite.la" "libprotobuf-lite.la" ) gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' Making install in . gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' gmake[6]: Nothing to be done for 'install-exec-am'. test -z "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/pkgconfig" || ./install-sh -c -d "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/pkgconfig" /usr/bin/install -c -m 644 protobuf.pc protobuf-lite.pc '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/pkgconfig' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' Making install in src gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' gmake install-am gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' test -z "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib" || .././install-sh -c -d "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib" test -z "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include" || .././install-sh -c -d "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include" /bin/sh ../libtool --mode=install /usr/bin/install -c libprotobuf-lite.la libprotobuf.la libprotoc.la '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib' libtool: install: /usr/bin/install -c .libs/libprotobuf-lite.so.8.0.0 /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf-lite.so.8.0.0 libtool: install: (cd /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib && { ln -s -f libprotobuf-lite.so.8.0.0 libprotobuf-lite.so.8 || { rm -f libprotobuf-lite.so.8 && ln -s libprotobuf-lite.so.8.0.0 libprotobuf-lite.so.8; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib && { ln -s -f libprotobuf-lite.so.8.0.0 libprotobuf-lite.so || { rm -f libprotobuf-lite.so && ln -s libprotobuf-lite.so.8.0.0 libprotobuf-lite.so; }; }) libtool: install: /usr/bin/install -c .libs/libprotobuf-lite.lai /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf-lite.la ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf' libtool: install: /usr/bin/install -c .libs/libprotobuf.so.8.0.0 /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf.so.8.0.0 /usr/bin/install -c -m 644 google/protobuf/descriptor.proto '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf' libtool: install: (cd /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib && { ln -s -f libprotobuf.so.8.0.0 libprotobuf.so.8 || { rm -f libprotobuf.so.8 && ln -s libprotobuf.so.8.0.0 libprotobuf.so.8; }; }) ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler' libtool: install: (cd /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib && { ln -s -f libprotobuf.so.8.0.0 libprotobuf.so || { rm -f libprotobuf.so && ln -s libprotobuf.so.8.0.0 libprotobuf.so; }; }) /usr/bin/install -c -m 644 google/protobuf/compiler/plugin.proto '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler' libtool: install: /usr/bin/install -c .libs/libprotobuf.lai /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf.la test -z "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include" || .././install-sh -c -d "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include" libtool: install: warning: relinking `libprotoc.la' libtool: install: (cd /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/src; /bin/sh /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/libtool --tag CXX --mode=relink c++ -D_THREAD_SAFE -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -version-info 8:0:0 -export-dynamic -no-undefined -fstack-protector-strong -o libprotoc.la -rpath /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib code_generator.lo command_line_interface.lo plugin.lo plugin.pb.lo subprocess.lo zip_writer.lo cpp_enum.lo cpp_enum_field.lo cpp_extension.lo cpp_field.lo cpp_file.lo cpp_generator.lo cpp_helpers.lo cpp_message.lo cpp_message_field.lo cpp_primitive_field.lo cpp_service.lo cpp_string_field.lo java_enum.lo java_enum_field.lo java_extension.lo java_field.lo java_file.lo java_generator.lo java_helpers.lo java_message.lo java_message_field.lo java _primitive_field.lo java_service.lo java_string_field.lo java_doc_comment.lo python_generator.lo -lpthread libprotobuf.la -lz ) ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler/python' /usr/bin/install -c -m 644 google/protobuf/compiler/python/python_generator.h '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler/python' ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler/cpp' /usr/bin/install -c -m 644 google/protobuf/compiler/cpp/cpp_generator.h '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler/cpp' ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/stubs' /usr/bin/install -c -m 644 google/protobuf/stubs/atomicops.h google/protobuf/stubs/atomicops_internals_arm_gcc.h google/protobuf/stubs/atomicops_internals_arm_qnx.h google/protobuf/stubs/atomicops_internals_atomicword_compat.h google/protobuf/stubs/atomicops_internals_macosx.h google/protobuf/stubs/atomicops_internals_mips_gcc.h google/protobuf/stubs/atomicops_internals_pnacl.h google/protobuf/stubs/atomicops_internals_x86_gcc.h google/protobuf/stubs/atomicops_internals_x86_msvc.h google/protobuf/stubs/common.h google/protobuf/stubs/platform_macros.h google/protobuf/stubs/once.h google/protobuf/stubs/template_util.h google/protobuf/stubs/type_traits.h '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/stubs' ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/io' /usr/bin/install -c -m 644 google/protobuf/io/coded_stream.h google/protobuf/io/gzip_stream.h google/protobuf/io/printer.h google/protobuf/io/tokenizer.h google/protobuf/io/zero_copy_stream.h google/protobuf/io/zero_copy_stream_impl.h google/protobuf/io/zero_copy_stream_impl_lite.h '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/io' ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf' /usr/bin/install -c -m 644 google/protobuf/descriptor.h google/protobuf/descriptor.pb.h google/protobuf/descriptor_database.h google/protobuf/dynamic_message.h google/protobuf/extension_set.h google/protobuf/generated_enum_reflection.h google/protobuf/generated_message_util.h google/protobuf/generated_message_reflection.h google/protobuf/message.h google/protobuf/message_lite.h google/protobuf/reflection_ops.h google/protobuf/repeated_field.h google/protobuf/service.h google/protobuf/text_format.h google/protobuf/unknown_field_set.h google/protobuf/wire_format.h google/protobuf/wire_format_lite.h google/protobuf/wire_format_lite_inl.h '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf' ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler/java' /usr/bin/install -c -m 644 google/protobuf/compiler/java/java_generator.h '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler/java' ././install-sh -c -d '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler' /usr/bin/install -c -m 644 google/protobuf/compiler/code_generator.h google/protobuf/compiler/command_line_interface.h google/protobuf/compiler/importer.h google/protobuf/compiler/parser.h google/protobuf/compiler/plugin.h google/protobuf/compiler/plugin.pb.h '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../sources/include/DUMMY/include/google/protobuf/compiler' libtool: relink: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o .libs/code_generator.o .libs/command_line_interface.o .libs/plugin.o .libs/plugin.pb.o .libs/subprocess.o .libs/zip_writer.o .libs/cpp_enum.o .libs/cpp_enum_field.o .libs/cpp_extension.o .libs/cpp_field.o .libs/cpp_file.o .libs/cpp_generator.o .libs/cpp_helpers.o .libs/cpp_message.o .libs/cpp_message_field.o .libs/cpp_primitive_field.o .libs/cpp_service.o .libs/cpp_string_field.o .libs/java_enum.o .libs/java_enum_field.o .libs/java_extension.o .libs/java_field.o .libs/java_file.o .libs/java_generator.o .libs/java_helpers.o .libs/java_message.o .libs/java_message_field.o .libs/java_primitive_field.o .libs/java_service.o .libs/java_string_field.o .libs/java_doc_comment.o .libs/python_generator.o -Wl,-rpath -Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib -lpthread ./.libs/libprotobuf.so -lz -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr /lib/crtn.o -pthread -O2 -fstack-protector-strong -fstack-protector-strong -pthread -Wl,-soname -Wl,libprotoc.so.8 -o .libs/libprotoc.so.8.0.0 clang-cpp: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang-cpp: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: install: /usr/bin/install -c .libs/libprotoc.so.8.0.0T /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotoc.so.8.0.0 libtool: install: (cd /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib && { ln -s -f libprotoc.so.8.0.0 libprotoc.so.8 || { rm -f libprotoc.so.8 && ln -s libprotoc.so.8.0.0 libprotoc.so.8; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib && { ln -s -f libprotoc.so.8.0.0 libprotoc.so || { rm -f libprotoc.so && ln -s libprotoc.so.8.0.0 libprotoc.so; }; }) libtool: install: /usr/bin/install -c .libs/libprotoc.lai /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotoc.la libtool: install: /usr/bin/install -c .libs/libprotobuf-lite.a /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf-lite.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf-lite.a libtool: install: ranlib /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf-lite.a libtool: install: /usr/bin/install -c .libs/libprotobuf.a /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf.a libtool: install: ranlib /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotobuf.a libtool: install: /usr/bin/install -c .libs/libprotoc.a /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotoc.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotoc.a libtool: install: ranlib /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib/libprotoc.a test -z "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/bin" || .././install-sh -c -d "/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c protoc '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/bin' libtool: install: /usr/bin/install -c .libs/protoc /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/bin/protoc gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' gmake[1]: *** [Makefile:165: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/plinkseq
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