Skip site navigation (1)Skip section navigation (2)
Date:      Tue, 14 Nov 2017 07:07:30 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 110arm64-quarterly][science/afni] Failed for afni-2015.11.13_5 in build
Message-ID:  <201711140707.vAE77UjH035759@thunderx1.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     bacon4000@gmail.com
Last committer: pawel@FreeBSD.org
Ident:          $FreeBSD: branches/2017Q4/science/afni/Makefile 446540 2017-07-24 18:26:39Z pawel $
Log URL:        http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/454158/logs/afni-2015.11.13_5.log
Build URL:      http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=454158
Log:

====>> Building science/afni
build started at Tue Nov 14 06:42:12 UTC 2017
port directory: /usr/ports/science/afni
building for: FreeBSD 110arm64-quarterly-job-09 11.0-RELEASE-p1 FreeBSD 11.0-RELEASE-p1 arm64
maintained by: bacon4000@gmail.com
Makefile ident:      $FreeBSD: branches/2017Q4/science/afni/Makefile 446540 2017-07-24 18:26:39Z pawel $
Poudriere version: 3.1.22
Host OSVERSION: 1200044
Jail OSVERSION: 1100122
Job Id: 09

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=afni-2015.11.13_5
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.22
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work  HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
CC="cc" R_SHARE_DIR=/usr/local/lib/R/share MOTIFLIB="-L/usr/local/lib -lXm -lXp" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work  HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing"  CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG"  LDFLAGS="" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fno-strict-aliasing  -DLIBICONV_PLUG"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python2.7
PYTHON_LIBDIR=lib/python2.7
PYTHON_PLATFORM=freebsd11
PYTHON_PYOEXTENSION=pyo
PYTHON_SITELIBDIR=lib/python2.7/site-packages
PYTHON_SUFFIX=27
PYTHON_VER=2.7
PYTHON_VERSION=python2.7
PYTHON2=""
PYTHON3="@comment
"
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.3
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/afni"
EXAMPLESDIR="share/examples/afni"
DATADIR="share/afni"
WWWDIR="www/afni"
ETCDIR="etc/afni"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/afni
DOCSDIR=/usr/local/share/doc/afni
EXAMPLESDIR=/usr/local/share/examples/afni
WWWDIR=/usr/local/www/afni
ETCDIR=/usr/local/etc/afni
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun
_JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+
_OSRELEASE=11.0-RELEASE-p1
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  1048576
stack size              (kbytes, -s)  1048576
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   afni-2015.11.13_5 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[110arm64-quarterly-job-09] Installing pkg-1.10.1...
[110arm64-quarterly-job-09] Extracting pkg-1.10.1: .......... done
===>   afni-2015.11.13_5 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of afni-2015.11.13_5
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_5 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_5 for building
=> SHA256 Checksum OK for afni-2015.11.13.tar.xz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_5 for building
===>  Extracting for afni-2015.11.13_5
=> SHA256 Checksum OK for afni-2015.11.13.tar.xz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for afni-2015.11.13_5
===>  Applying FreeBSD patches for afni-2015.11.13_5
/usr/bin/sed -i.bak -e "s|-lglib|-lglib-2.0|g"  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/SUMA/SUMA_Makefile
/usr/bin/sed -i.bak -e "s|/bin/python|/usr/local/bin/python2.7|g"  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/python_scripts/lib_fat_Rfactor.py
/usr/bin/sed -i.bak  -e 's|os\.path\.dirname(sys\.argv\[0\])|"/usr/local/libexec"|g'  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/pkundu/meica.py
/usr/bin/sed -i.bak  -e 's|g_info|afni_g_info|g'  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/rickr/Dimon.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/rickr/Dimon1.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/afni_history_rickr.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/mri_dicom_stuff.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/mri_process_siemens.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/mri_read_dicom.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/to3d.c  /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/mri_dicom_stuff.h
===========================================================================
=======================<phase: build-depends  >============================
===>   afni-2015.11.13_5 depends on executable: gm4 - not found
===>   Installing existing package /packages/All/m4-1.4.18,1.txz
[110arm64-quarterly-job-09] Installing m4-1.4.18,1...
[110arm64-quarterly-job-09] `-- Installing indexinfo-0.2.6...
[110arm64-quarterly-job-09] `-- Extracting indexinfo-0.2.6: .... done
[110arm64-quarterly-job-09] Extracting m4-1.4.18,1: .......... done
===>   afni-2015.11.13_5 depends on executable: gm4 - found
===>   Returning to build of afni-2015.11.13_5
<snip>
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG error.c
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG -DVERSION=`cat ../VERSION` libvers.c
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG nc.c
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG ncio.c
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG ncx.c
gm4 -B10000 putget.m4 >putget.c
gm4: warning: `m4 -B' may be removed in a future release
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG putget.c
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG string.c
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG v1hpg.c
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG v2i.c
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -I.  -DLIBICONV_PLUG var.c
ar cru libnetcdf.a attr.o dim.o error.o libvers.o nc.o ncio.o ncx.o putget.o string.o v1hpg.o v2i.o var.o
ranlib libnetcdf.a
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc'
rm -f *.o *.a *.so *.sl *.i *.Z core t_ncio.o t_ncio t_ncx.o t_ncx t_ncxx.o t_ncxx t_nc.o t_nc test.nc *.so
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/libsrc'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest'
rm -f *.o *.a *.so *.sl *.i *.Z core nctest lint.out test.nc test2.nc times
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nctest'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test'
rm -f *.o *.a *.so *.sl *.i *.Z core nc_test test.nc scratch.nc lint.out times
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nc_test'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran'
rm -f *.o *.a *.so *.sl *.i *.Z core copy.nc ftest ftest.f77 test.nc
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/fortran'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90'
rm -f *.o *.a *.so *.sl *.i *.Z core netcdf_test *.mod example.nc example.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/f90'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test'
rm -f *.o *.a *.so *.sl *.i *.Z core times lint.out nf_test scratch.nc *.f77
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/nf_test'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump'
rm -f *.o *.a *.so *.sl *.i *.Z core ncdump test0.nc test1.nc test1.cdl test2.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncdump'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen'
rm -f *.o *.a *.so *.sl *.i *.Z core ncgen netcdf.inc c0.nc c1.cdl c1.nc c2.cdl f0.nc ctest.c ctest ctest0.nc ctest1.cdl ftest.f ftest ftest0.nc ftest1.cdl
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/ncgen'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'

Making `clean' in directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx

gmake[4]: Entering directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx'
rm -f *.o *.a *.so *.sl *.i *.Z core nctst test.out example.nc *.cps *.dvi *.fns *.log *~ *.gs *.aux *.cp *.fn *.ky *.pg *.toc *.tp *.vr
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src/cxx'

Returning to directory /wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src

gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
rm -f *.o *.a *.so *.sl *.i *.Z core 
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/netcdf-3.5.0/src'
/bin/rm -f thd_mincread.o
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c thd_mincread.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
/bin/rm -f suma_afni_surface.o
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_afni_surface.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
/bin/rm -f suma_datasets.o
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_datasets.c -o suma_datasets.o -ISUMA/ -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
suma_datasets.c:2619:11: warning: implicit declaration of function 'SUMA_GetDsetNodeIndexColRange_eng' is invalid in C99 [-Wimplicit-function-declaration]
   return(SUMA_GetDsetNodeIndexColRange_eng(
          ^
suma_datasets.c:10615:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
      if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
suma_datasets.c:10615:18: note: place parentheses around the assignment to silence this warning
      if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
                 ^
          (                                            )
suma_datasets.c:10615:18: note: use '==' to turn this assignment into an equality comparison
      if (nfixed = SUMA_FloatScanDset(dset, 1, 1, 1, 0)) {
                 ^
                 ==
suma_datasets.c:13921:4: warning: implicit declaration of function 'selenium_close' is invalid in C99 [-Wimplicit-function-declaration]
   selenium_close(); /* close any selenium opened browser windows if open */
   ^
suma_datasets.c:14896:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
            if (!((tt = (1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
                      ^                                 ~~
suma_datasets.c:14903:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
            if (!((tt = (-1+sqrt(1+8*nseg))/2.0) == (int)tt)) {
                      ^                                  ~~
suma_datasets.c:14910:23: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
            if (!((tt = sqrt(SDSET_VECLEN(dset))) == (int)tt)) {
                      ^                                   ~~
suma_datasets.c:14931:32: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
          ((!i0 && !i1) && (tt = (1+sqrt(1+8*nseg))/2.0) == (int)tt)) { 
                               ^                                 ~~
suma_datasets.c:14946:39: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
                 ((!i0 && !i1) && (tt = (-1+sqrt(1+8*nseg))/2.0) == (int)tt)) { 
                                      ^                                  ~~
suma_datasets.c:14964:39: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
                 ((!i0 && !i1) && (tt = sqrt(SDSET_VECLEN(dset))) == (int)tt)) {
                                      ^                                   ~~
suma_datasets.c:15031:17: warning: unsequenced modification and access to 'tt' [-Wunsequenced]
         if ((tt=SDSET_VECLEN(dset)/(msz[0]*msz[1])) != (int)tt) {
                ^                                            ~~
suma_datasets.c:16329:26: warning: equality comparison result unused [-Wunused-comparison]
      dset->Aux->isGraph == TRACT_DSET;
      ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
suma_datasets.c:16329:26: note: use '=' to turn this equality comparison into an assignment
      dset->Aux->isGraph == TRACT_DSET;
                         ^~
                         =
suma_datasets.c:16381:26: warning: equality comparison result unused [-Wunused-comparison]
      dset->Aux->isGraph == CIFTI_DSET;
      ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
suma_datasets.c:16381:26: note: use '=' to turn this equality comparison into an assignment
      dset->Aux->isGraph == CIFTI_DSET;
                         ^~
                         =
suma_datasets.c:16386:26: warning: equality comparison result unused [-Wunused-comparison]
      dset->Aux->isGraph == CIFTI_DSET;
      ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
suma_datasets.c:16386:26: note: use '=' to turn this equality comparison into an assignment
      dset->Aux->isGraph == CIFTI_DSET;
                         ^~
                         =
13 warnings generated.
/bin/rm -f suma_utils.o
cc -O2 -pipe  -DLIBICONV_PLUG -fno-strict-aliasing -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c suma_utils.c -o suma_utils.o -ISUMA/ -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
suma_utils.c:3043:10: error: statement requires expression of scalar type ('va_list' (aka '__builtin_va_list') invalid)
         if (vararg_ptr) {
         ^   ~~~~~~~~~~
1 error generated.
gmake[1]: *** [Makefile.INCLUDE:1795: suma_utils.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/afni



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201711140707.vAE77UjH035759>