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Date:      Tue, 21 Aug 2018 01:31:16 GMT
From:      pkg-fallout@FreeBSD.org
To:        sunpoet@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - 104amd64-default][science/cdo] Failed for cdo-1.9.5 in build
Message-ID:  <201808210131.w7L1VGFb016346@beefy6.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Last committer: sunpoet@FreeBSD.org
Ident:          $FreeBSD: head/science/cdo/Makefile 477515 2018-08-18 20:41:01Z sunpoet $
Log URL:        http://beefy6.nyi.freebsd.org/data/104amd64-default/477696/logs/cdo-1.9.5.log
Build URL:      http://beefy6.nyi.freebsd.org/build.html?mastername=104amd64-default&build=477696
Log:

=>> Building science/cdo
build started at Tue Aug 21 01:29:15 UTC 2018
port directory: /usr/ports/science/cdo
package name: cdo-1.9.5
building for: FreeBSD 104amd64-default-job-13 10.4-RELEASE-p11 FreeBSD 10.4-RELEASE-p11 amd64
maintained by: sunpoet@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/cdo/Makefile 477515 2018-08-18 20:41:01Z sunpoet $
Poudriere version: 3.2.7-2-g1cf194be
Host OSVERSION: 1200069
Jail OSVERSION: 1004000
Job Id: 13

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---Begin OPTIONS List---
===> The following configuration options are available for cdo-1.9.5:
     CGRIBEX=on: Use CGRIBEX library for GRIB1 files
     HDF5=on: HDF-5 data format support
     JASPER=on: JPEG 2000 support via JasPer
     NETCDF=on: NetCDF data format support
     PROJ=on: PROJ.4 cartographic projections support
     SZIP=on: Szip compression support
     UDUNITS=on: Unidata units library (udunits) support
     UUID=on: UUID support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
sunpoet@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--disable-data  --disable-extra  --disable-grib  --disable-ieg  --disable-openmp  --disable-service  --enable-cdi-lib  --program-transform-name=""  --with-zlib=/usr --with-cgribex --with-hdf5 --with-jasper --with-netcdf --with-proj --with-szlib --with-udunits2 --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work  HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cdo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
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 install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" CGRIBEX="" NO_CGRIBEX="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " UUID="" NO_UUID="@comment " OSREL=10.4 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cdo"  EXAMPLESDIR="share/examples/cdo"  DATADIR="share/cdo"  WWWDIR="www/cdo"  ETCDIR="etc/cdo"
--End PLIST_SUB--

--SUB_LIST--
CGRIBEX="" NO_CGRIBEX="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " UUID="" NO_UUID="@comment " PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/cdo DOCSDIR=/usr/local/share/doc/cdo EXAMPLESDIR=/usr/local/share/examples/cdo  WWWDIR=/usr/local/www/cdo ETCDIR=/usr/local/etc/cdo
--End SUB_LIST--

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--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   cdo-1.9.5 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_2.txz
[104amd64-default-job-13] Installing pkg-1.10.5_2...
[104amd64-default-job-13] Extracting pkg-1.10.5_2: .......... done
===>   cdo-1.9.5 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of cdo-1.9.5
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
=> cdo-1.9.5.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://code.mpimet.mpg.de/attachments/download/18264/cdo-1.9.5.tar.gz
fetch: https://code.mpimet.mpg.de/attachments/download/18264/cdo-1.9.5.tar.gz: size unknown
fetch: https://code.mpimet.mpg.de/attachments/download/18264/cdo-1.9.5.tar.gz: size of remote file is not known
cdo-1.9.5.tar.gz                                         0  B    0  Bps
===> Fetching all distfiles required by cdo-1.9.5 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-1.9.5 for building
=> SHA256 Checksum OK for cdo-1.9.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-1.9.5 for building
===>  Extracting for cdo-1.9.5
=> SHA256 Checksum OK for cdo-1.9.5.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for cdo-1.9.5
===>  Applying FreeBSD patches for cdo-1.9.5
===========================================================================
=======================<phase: build-depends  >============================
<snip>
mv -f .deps/cdi_write_hybrid.Tpo .deps/cdi_write_hybrid.Po
/bin/sh ../libtool  --tag=CC   --mode=link cc  -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread  -fstack-protector -o cdi_write_hybrid cdi_write_hybrid.o ../src/libcdi.la -lhdf5 -lnetcdf -lsz  -lm -lexecinfo -L/usr/local/lib -luuid
libtool: link: cc -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector -o .libs/cdi_write_hybrid cdi_write_hybrid.o  ../src/.libs/libcdi.so -L/usr/local/lib -lhdf5 -lnetcdf -lsz -lm -lexecinfo -luuid -pthread -Wl,-rpath -Wl,/usr/local/lib
cc -DHAVE_CONFIG_H -I. -I../src  -I../src -isystem /usr/local/include    -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -MT cdi_write_local.o -MD -MP -MF .deps/cdi_write_local.Tpo -c -o cdi_write_local.o cdi_write_local.c
mv -f .deps/cdi_write_local.Tpo .deps/cdi_write_local.Po
/bin/sh ../libtool  --tag=CC   --mode=link cc  -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread  -fstack-protector -o cdi_write_local cdi_write_local.o ../src/libcdi.la -lhdf5 -lnetcdf -lsz  -lm -lexecinfo -L/usr/local/lib -luuid
libtool: link: cc -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector -o .libs/cdi_write_local cdi_write_local.o  ../src/.libs/libcdi.so -L/usr/local/lib -lhdf5 -lnetcdf -lsz -lm -lexecinfo -luuid -pthread -Wl,-rpath -Wl,/usr/local/lib
cc -DHAVE_CONFIG_H -I. -I../src  -I../src -isystem /usr/local/include    -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -MT cdi_read.o -MD -MP -MF .deps/cdi_read.Tpo -c -o cdi_read.o cdi_read.c
mv -f .deps/cdi_read.Tpo .deps/cdi_read.Po
/bin/sh ../libtool  --tag=CC   --mode=link cc  -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread  -fstack-protector -o cdi_read cdi_read.o ../src/libcdi.la -lhdf5 -lnetcdf -lsz  -lm -lexecinfo -L/usr/local/lib -luuid
libtool: link: cc -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector -o .libs/cdi_read cdi_read.o  ../src/.libs/libcdi.so -L/usr/local/lib -lhdf5 -lnetcdf -lsz -lm -lexecinfo -luuid -pthread -Wl,-rpath -Wl,/usr/local/lib
cc -DHAVE_CONFIG_H -I. -I../src  -I../src -isystem /usr/local/include    -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -MT cdi_copy.o -MD -MP -MF .deps/cdi_copy.Tpo -c -o cdi_copy.o cdi_copy.c
mv -f .deps/cdi_copy.Tpo .deps/cdi_copy.Po
/bin/sh ../libtool  --tag=CC   --mode=link cc  -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread  -fstack-protector -o cdi_copy cdi_copy.o ../src/libcdi.la -lhdf5 -lnetcdf -lsz  -lm -lexecinfo -L/usr/local/lib -luuid
libtool: link: cc -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector -o .libs/cdi_copy cdi_copy.o  ../src/.libs/libcdi.so -L/usr/local/lib -lhdf5 -lnetcdf -lsz -lm -lexecinfo -luuid -pthread -Wl,-rpath -Wl,/usr/local/lib
cc -DHAVE_CONFIG_H -I. -I../src  -I../src -isystem /usr/local/include    -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -MT cdi_write_const.o -MD -MP -MF .deps/cdi_write_const.Tpo -c -o cdi_write_const.o cdi_write_const.c
mv -f .deps/cdi_write_const.Tpo .deps/cdi_write_const.Po
/bin/sh ../libtool  --tag=CC   --mode=link cc  -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread  -fstack-protector -o cdi_write_const cdi_write_const.o ../src/libcdi.la -lhdf5 -lnetcdf -lsz  -lm -lexecinfo -L/usr/local/lib -luuid
libtool: link: cc -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector -o .libs/cdi_write_const cdi_write_const.o  ../src/.libs/libcdi.so -L/usr/local/lib -lhdf5 -lnetcdf -lsz -lm -lexecinfo -luuid -pthread -Wl,-rpath -Wl,/usr/local/lib
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/libcdi/examples'
Making all in examples/pio
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/libcdi/examples/pio'
cc -DHAVE_CONFIG_H -I. -I../../src  -I../../src  -isystem /usr/local/include    -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -MT collectData.o -MD -MP -MF .deps/collectData.Tpo -c -o collectData.o collectData.c
mv -f .deps/collectData.Tpo .deps/collectData.Po
/bin/sh ../../libtool  --tag=CC   --mode=link cc  -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread  -fstack-protector -o collectData collectData.o ../../src/libcdi.la -lhdf5 -lnetcdf -lsz  -lm -lexecinfo -L/usr/local/lib -luuid
libtool: link: cc -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector -o .libs/collectData collectData.o  ../../src/.libs/libcdi.so -L/usr/local/lib -lhdf5 -lnetcdf -lsz -lm -lexecinfo -luuid -pthread -Wl,-rpath -Wl,/usr/local/lib
cc -DHAVE_CONFIG_H -I. -I../../src  -I../../src  -isystem /usr/local/include    -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -MT collectDataNStreams.o -MD -MP -MF .deps/collectDataNStreams.Tpo -c -o collectDataNStreams.o collectDataNStreams.c
mv -f .deps/collectDataNStreams.Tpo .deps/collectDataNStreams.Po
/bin/sh ../../libtool  --tag=CC   --mode=link cc  -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread  -fstack-protector -o collectDataNStreams collectDataNStreams.o ../../src/libcdi.la -lhdf5 -lnetcdf -lsz  -lm -lexecinfo -L/usr/local/lib -luuid
libtool: link: cc -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -fstack-protector -o .libs/collectDataNStreams collectDataNStreams.o  ../../src/.libs/libcdi.so -L/usr/local/lib -lhdf5 -lnetcdf -lsz -lm -lexecinfo -luuid -pthread -Wl,-rpath -Wl,/usr/local/lib
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/libcdi/examples/pio'
Making all in tests
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/libcdi/tests'
gmake[3]: Nothing to be done for 'all'.
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/libcdi/tests'
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/libcdi'
gmake[3]: Nothing to be done for 'all-am'.
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/libcdi'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/libcdi'
Making all in src/lib/ncl
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/src/lib/ncl'
gmake[2]: Nothing to be done for 'all'.
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/src/lib/ncl'
Making all in src/lib/yac
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/src/lib/yac'
depbase=`echo area.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT area.lo -MD -MP -MF $depbase.Tpo -c -o area.lo area.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT area.lo -MD -MP -MF .deps/area.Tpo -c area.c  -fPIC -DPIC -o .libs/area.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT area.lo -MD -MP -MF .deps/area.Tpo -c area.c -o area.o >/dev/null 2>&1
depbase=`echo bnd_circle.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT bnd_circle.lo -MD -MP -MF $depbase.Tpo -c -o bnd_circle.lo bnd_circle.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT bnd_circle.lo -MD -MP -MF .deps/bnd_circle.Tpo -c bnd_circle.c  -fPIC -DPIC -o .libs/bnd_circle.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT bnd_circle.lo -MD -MP -MF .deps/bnd_circle.Tpo -c bnd_circle.c -o bnd_circle.o >/dev/null 2>&1
depbase=`echo check_overlap.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT check_overlap.lo -MD -MP -MF $depbase.Tpo -c -o check_overlap.lo check_overlap.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT check_overlap.lo -MD -MP -MF .deps/check_overlap.Tpo -c check_overlap.c  -fPIC -DPIC -o .libs/check_overlap.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT check_overlap.lo -MD -MP -MF .deps/check_overlap.Tpo -c check_overlap.c -o check_overlap.o >/dev/null 2>&1
depbase=`echo clipping.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT clipping.lo -MD -MP -MF $depbase.Tpo -c -o clipping.lo clipping.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT clipping.lo -MD -MP -MF .deps/clipping.Tpo -c clipping.c  -fPIC -DPIC -o .libs/clipping.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT clipping.lo -MD -MP -MF .deps/clipping.Tpo -c clipping.c -o clipping.o >/dev/null 2>&1
depbase=`echo dep_list.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT dep_list.lo -MD -MP -MF $depbase.Tpo -c -o dep_list.lo dep_list.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT dep_list.lo -MD -MP -MF .deps/dep_list.Tpo -c dep_list.c  -fPIC -DPIC -o .libs/dep_list.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT dep_list.lo -MD -MP -MF .deps/dep_list.Tpo -c dep_list.c -o dep_list.o >/dev/null 2>&1
depbase=`echo ensure_array_size.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT ensure_array_size.lo -MD -MP -MF $depbase.Tpo -c -o ensure_array_size.lo ensure_array_size.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT ensure_array_size.lo -MD -MP -MF .deps/ensure_array_size.Tpo -c ensure_array_size.c  -fPIC -DPIC -o .libs/ensure_array_size.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT ensure_array_size.lo -MD -MP -MF .deps/ensure_array_size.Tpo -c ensure_array_size.c -o ensure_array_size.o >/dev/null 2>&1
depbase=`echo grid.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid.lo -MD -MP -MF $depbase.Tpo -c -o grid.lo grid.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid.lo -MD -MP -MF .deps/grid.Tpo -c grid.c  -fPIC -DPIC -o .libs/grid.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid.lo -MD -MP -MF .deps/grid.Tpo -c grid.c -o grid.o >/dev/null 2>&1
depbase=`echo grid_cell.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_cell.lo -MD -MP -MF $depbase.Tpo -c -o grid_cell.lo grid_cell.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_cell.lo -MD -MP -MF .deps/grid_cell.Tpo -c grid_cell.c  -fPIC -DPIC -o .libs/grid_cell.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_cell.lo -MD -MP -MF .deps/grid_cell.Tpo -c grid_cell.c -o grid_cell.o >/dev/null 2>&1
depbase=`echo grid_reg2d.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_reg2d.lo -MD -MP -MF $depbase.Tpo -c -o grid_reg2d.lo grid_reg2d.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_reg2d.lo -MD -MP -MF .deps/grid_reg2d.Tpo -c grid_reg2d.c  -fPIC -DPIC -o .libs/grid_reg2d.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_reg2d.lo -MD -MP -MF .deps/grid_reg2d.Tpo -c grid_reg2d.c -o grid_reg2d.o >/dev/null 2>&1
depbase=`echo grid_reg2d_common.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_reg2d_common.lo -MD -MP -MF $depbase.Tpo -c -o grid_reg2d_common.lo grid_reg2d_common.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_reg2d_common.lo -MD -MP -MF .deps/grid_reg2d_common.Tpo -c grid_reg2d_common.c  -fPIC -DPIC -o .libs/grid_reg2d_common.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_reg2d_common.lo -MD -MP -MF .deps/grid_reg2d_common.Tpo -c grid_reg2d_common.c -o grid_reg2d_common.o >/dev/null 2>&1
depbase=`echo grid_search.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_search.lo -MD -MP -MF $depbase.Tpo -c -o grid_search.lo grid_search.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_search.lo -MD -MP -MF .deps/grid_search.Tpo -c grid_search.c  -fPIC -DPIC -o .libs/grid_search.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_search.lo -MD -MP -MF .deps/grid_search.Tpo -c grid_search.c -o grid_search.o >/dev/null 2>&1
depbase=`echo grid_search_utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_search_utils.lo -MD -MP -MF $depbase.Tpo -c -o grid_search_utils.lo grid_search_utils.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_search_utils.lo -MD -MP -MF .deps/grid_search_utils.Tpo -c grid_search_utils.c  -fPIC -DPIC -o .libs/grid_search_utils.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_search_utils.lo -MD -MP -MF .deps/grid_search_utils.Tpo -c grid_search_utils.c -o grid_search_utils.o >/dev/null 2>&1
depbase=`echo grid_scrip.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_scrip.lo -MD -MP -MF $depbase.Tpo -c -o grid_scrip.lo grid_scrip.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_scrip.lo -MD -MP -MF .deps/grid_scrip.Tpo -c grid_scrip.c  -fPIC -DPIC -o .libs/grid_scrip.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_scrip.lo -MD -MP -MF .deps/grid_scrip.Tpo -c grid_scrip.c -o grid_scrip.o >/dev/null 2>&1
depbase=`echo grid_unstruct.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_unstruct.lo -MD -MP -MF $depbase.Tpo -c -o grid_unstruct.lo grid_unstruct.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_unstruct.lo -MD -MP -MF .deps/grid_unstruct.Tpo -c grid_unstruct.c  -fPIC -DPIC -o .libs/grid_unstruct.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT grid_unstruct.lo -MD -MP -MF .deps/grid_unstruct.Tpo -c grid_unstruct.c -o grid_unstruct.o >/dev/null 2>&1
depbase=`echo interval_tree.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT interval_tree.lo -MD -MP -MF $depbase.Tpo -c -o interval_tree.lo interval_tree.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT interval_tree.lo -MD -MP -MF .deps/interval_tree.Tpo -c interval_tree.c  -fPIC -DPIC -o .libs/interval_tree.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT interval_tree.lo -MD -MP -MF .deps/interval_tree.Tpo -c interval_tree.c -o interval_tree.o >/dev/null 2>&1
depbase=`echo intersection.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT intersection.lo -MD -MP -MF $depbase.Tpo -c -o intersection.lo intersection.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT intersection.lo -MD -MP -MF .deps/intersection.Tpo -c intersection.c  -fPIC -DPIC -o .libs/intersection.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT intersection.lo -MD -MP -MF .deps/intersection.Tpo -c intersection.c -o intersection.o >/dev/null 2>&1
depbase=`echo points.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT points.lo -MD -MP -MF $depbase.Tpo -c -o points.lo points.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT points.lo -MD -MP -MF .deps/points.Tpo -c points.c  -fPIC -DPIC -o .libs/points.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT points.lo -MD -MP -MF .deps/points.Tpo -c points.c -o points.o >/dev/null 2>&1
depbase=`echo sphere_part.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT sphere_part.lo -MD -MP -MF $depbase.Tpo -c -o sphere_part.lo sphere_part.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT sphere_part.lo -MD -MP -MF .deps/sphere_part.Tpo -c sphere_part.c  -fPIC -DPIC -o .libs/sphere_part.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT sphere_part.lo -MD -MP -MF .deps/sphere_part.Tpo -c sphere_part.c -o sphere_part.o >/dev/null 2>&1
depbase=`echo utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../../../libtool  --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src   -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT utils.lo -MD -MP -MF $depbase.Tpo -c -o utils.lo utils.c &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c  -fPIC -DPIC -o .libs/utils.o
libtool: compile:  cc -DHAVE_CONFIG_H -I. -I../../../src -isystem /usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -o utils.o >/dev/null 2>&1
/bin/sh ../../../libtool  --tag=CC   --mode=link cc  -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread  -fstack-protector -o libyac.la  area.lo bnd_circle.lo check_overlap.lo clipping.lo dep_list.lo ensure_array_size.lo grid.lo grid_cell.lo grid_reg2d.lo grid_reg2d_common.lo grid_search.lo grid_search_utils.lo grid_scrip.lo grid_unstruct.lo interval_tree.lo intersection.lo points.lo sphere_part.lo utils.lo  -lnetcdf -lsz  -lproj -ludunits2 -lnetcdf -lhdf5_hl -lhdf5 -lsz  -lm -L/usr/local/lib
libtool: link: ar cru .libs/libyac.a .libs/area.o .libs/bnd_circle.o .libs/check_overlap.o .libs/clipping.o .libs/dep_list.o .libs/ensure_array_size.o .libs/grid.o .libs/grid_cell.o .libs/grid_reg2d.o .libs/grid_reg2d_common.o .libs/grid_search.o .libs/grid_search_utils.o .libs/grid_scrip.o .libs/grid_unstruct.o .libs/interval_tree.o .libs/intersection.o .libs/points.o .libs/sphere_part.o .libs/utils.o 
libtool: link: ranlib .libs/libyac.a
libtool: link: ( cd ".libs" && rm -f "libyac.la" && ln -s "../libyac.la" "libyac.la" )
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/src/lib/yac'
Making all in src
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/src'
gmake  all-am
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/src'
c++ -DHAVE_CONFIG_H -I.  -I../libcdi/src -isystem /usr/local/include   -O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -std=c++11  -D_THREAD_SAFE -pthread -MT cdo-cdo.o -MD -MP -MF .deps/cdo-cdo.Tpo -c -o cdo-cdo.o `test -f 'cdo.cc' || echo './'`cdo.cc
In file included from cdo.cc:23:
In file included from /usr/include/c++/v1/iostream:38:
In file included from /usr/include/c++/v1/ios:216:
In file included from /usr/include/c++/v1/__locale:15:
In file included from /usr/include/c++/v1/string:439:
In file included from /usr/include/c++/v1/algorithm:627:
/usr/include/c++/v1/utility:266:9: error: field has incomplete type 'ProcessType'
    _T2 second;
        ^
/usr/include/c++/v1/type_traits:2370:27: note: in instantiation of template class 'std::__1::pair<const int, ProcessType>' requested here
                 decltype(__is_constructible_test(declval<_Tp>(), declval<_Args>()...))
                          ^
/usr/include/c++/v1/type_traits:2419:14: note: in instantiation of template class 'std::__1::__libcpp_is_constructible<false, std::__1::allocator<std::__1::pair<const int, ProcessType> >>' requested here
    : public __libcpp_is_constructible<is_scalar<_Tp>::value || is_reference<_Tp>::value,
             ^
/usr/include/c++/v1/type_traits:2445:14: note: in instantiation of template class 'std::__1::__is_constructible_void_check<false, std::__1::allocator<std::__1::pair<const int, ProcessType> >>' requested here
    : public __is_constructible_void_check<__contains_void<_Tp, _Args...>::value
             ^
/usr/include/c++/v1/type_traits:2936:41: note: in instantiation of template class 'std::__1::is_constructible<std::__1::allocator<std::__1::pair<const int, ProcessType> >>' requested here
    : __libcpp_is_nothrow_constructible<is_constructible<_Tp, _Args...>::value, is_reference<_Tp>::value, _Tp, _Args...>
                                        ^
/usr/include/c++/v1/type_traits:3059:14: note: in instantiation of template class 'std::__1::is_nothrow_constructible<std::__1::allocator<std::__1::pair<const int, ProcessType> >>' requested here
    : public is_nothrow_constructible<_Tp>
             ^
/usr/include/c++/v1/map:840:13: note: in instantiation of template class 'std::__1::is_nothrow_default_constructible<std::__1::allocator<std::__1::pair<const int, ProcessType> > >' requested here
            is_nothrow_default_constructible<allocator_type>::value &&
            ^
/usr/include/c++/v1/__config:349:34: note: expanded from macro '_NOEXCEPT_'
#  define _NOEXCEPT_(x) noexcept(x)
                                 ^
./processManager.h:25:7: note: in instantiation of exception specification for 'map' requested here
class ProcessManager
      ^
./processManager.h:13:7: note: forward declaration of 'ProcessType'
class ProcessType;
      ^
./process_int.h:22:23: note: implicit default constructor for 'ProcessManager' first required here
static ProcessManager g_processManager;
                      ^
1 error generated.
gmake[3]: *** [Makefile:2301: cdo-cdo.o] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/src'
gmake[2]: *** [Makefile:920: all] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5/src'
gmake[1]: *** [Makefile:488: all-recursive] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.9.5'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/cdo



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