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Date:      Sun, 20 Oct 2019 09:14:41 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120armv7-quarterly][science/bagel] Failed for bagel-1.2.2_4 in build
Message-ID:  <201910200914.x9K9EfGc010046@beefy13.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: jbeich@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q4/science/bagel/Makefile 509290 2019-08-19 15:35:27Z jbeich $
Log URL:        http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/514846/logs/bagel-1.2.2_4.log
Build URL:      http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=514846
Log:

=>> Building science/bagel
build started at Sun Oct 20 09:12:18 UTC 2019
port directory: /usr/ports/science/bagel
package name: bagel-1.2.2_4
building for: FreeBSD 120armv7-quarterly-job-05 12.0-RELEASE-p10 FreeBSD 12.0-RELEASE-p10 1200086 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q4/science/bagel/Makefile 509290 2019-08-19 15:35:27Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300047
Jail OSVERSION: 1200086
Job Id: 05

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ABI_FILE=/usr/lib/crt1.o
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UNAME_r=12.0-RELEASE-p10
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---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for bagel-1.2.2_4:
     LIBXC=on: Build DFT with libxc
     MPI=on: MPI (Message Passing Interface) support
     SCALAPACK=on: Use ScaLapack library for parallelized linear algebra
     SMITH=on: Compile SMITH generated code
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--datarootdir=/usr/local/share/bagel --with-libxc --with-mpi=openmpi --enable-scalapack --enable-smith --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" MAKE=gmake PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work  HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work  HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno
 -strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -lcblas -lscalapack -Wl,-rpath=/usr/local/lib/gcc9  -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing   -isystem /usr/local/include -std=c++11 "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.6m  PYTHON_LIBDIR=lib/python3.6  PYTHON_PLATFORM=freebsd12  PYTHON_SITELIBDIR=lib/python3.6/site-packages  PYTHON_SUFFIX=36  PYTHON_VER=3.6  PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bagel"  EXAMPLESDIR="share/examples/bagel"  DATADIR="share/bagel"  WWWDIR="www/bagel"  ETCDIR="etc/bagel"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/bagel DOCSDIR=/usr/local/share/doc/bagel EXAMPLESDIR=/usr/local/share/examples/bagel  WWWDIR=/usr/local/www/bagel ETCDIR=/usr/local/etc/bagel
--End SUB_LIST--

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#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
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#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
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---End make.nxb.conf---
--Resource limits--
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file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
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pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   bagel-1.2.2_4 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.12.0.txz
[120armv7-quarterly-job-05] Installing pkg-1.12.0...
[120armv7-quarterly-job-05] Extracting pkg-1.12.0: .......... done
===>   bagel-1.2.2_4 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bagel-1.2.2_4
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2_4 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2_4 for building
=> SHA256 Checksum OK for nubakery-bagel-v1.2.2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
<snip>
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking whether gmake supports nested variables... yes
checking for python version... 3.6
checking for python platform... freebsd12
checking for python script directory... ${prefix}/lib/python3.6/site-packages
checking for python extension module directory... ${exec_prefix}/lib/python3.6/site-packages
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking whether /nxb-bin/usr/bin/cc understands -c and -o together... yes
checking whether gmake supports the include directive... yes (GNU style)
checking dependency style of /nxb-bin/usr/bin/cc... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether /nxb-bin/usr/bin/c++ accepts -g... yes
checking dependency style of /nxb-bin/usr/bin/c++... gcc3
.openmpi requested..
checking for mpicc... mpicc
checking for mpicxx... mpicxx
checking whether we are using the GNU C compiler... (cached) yes
checking whether mpicc accepts -g... (cached) yes
checking for mpicc option to accept ISO C89... (cached) none needed
checking whether mpicc understands -c and -o together... (cached) yes
checking dependency style of mpicc... (cached) gcc3
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether mpicxx accepts -g... (cached) yes
checking dependency style of mpicxx... (cached) gcc3
checking whether mpicxx supports C++11 features by default... yes
checking build system type... armv7-portbld-freebsd12.0
checking host system type... armv7-portbld-freebsd12.0
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by mpicc... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm
checking the name lister (/usr/local/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking how to convert armv7-portbld-freebsd12.0 file names to armv7-portbld-freebsd12.0 format... func_convert_file_noop
checking how to convert armv7-portbld-freebsd12.0 file names to toolchain format... func_convert_file_noop
checking for /usr/local/bin/ld option to reload object files... -r
checking for objdump... /usr/local/bin/objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... /usr/local/bin/ranlib
checking command to parse /usr/local/bin/nm output from mpicc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... yes
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... yes
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/local/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd12.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... mpicxx -E
checking for ld used by mpicxx... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking whether the mpicxx linker (/usr/local/bin/ld) supports shared libraries... yes
checking for mpicxx option to produce PIC... -fPIC -DPIC
checking if mpicxx PIC flag -fPIC -DPIC works... yes
checking if mpicxx static flag -static works... yes
checking if mpicxx supports -c -o file.o... yes
checking if mpicxx supports -c -o file.o... (cached) yes
checking whether the mpicxx linker (/usr/local/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd12.0 ld.so
checking how to hardcode library paths into programs... immediate
checking for main in -lscalapack... yes
checking for boostlib >= 1.53... yes
checking whether the Boost::Regex library is available... yes
checking for exit in -lboost_regex... yes
checking whether the Boost::Unit_Test_Framework library is available... yes
configure: WARNING: BOOST_CPPFLAGS -I/usr/local/include
checking whether the Boost::Serialization library is available... yes
checking for exit in -lboost_serialization... yes
checking xc.h usability... yes
checking xc.h presence... yes
checking for xc.h... yes
checking for main in -lxc... yes
checking for zgemm3m_... no
checking mpi.h usability... yes
checking mpi.h presence... yes
checking for mpi.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/util/Makefile
config.status: creating src/util/input/Makefile
config.status: creating src/util/io/Makefile
config.status: creating src/util/parallel/Makefile
config.status: creating src/util/math/Makefile
config.status: creating src/asd/multisite/Makefile
config.status: creating src/asd/dimer/Makefile
config.status: creating src/asd/dmrg/Makefile
config.status: creating src/asd/orbital/Makefile
config.status: creating src/asd/Makefile
config.status: creating src/wfn/Makefile
config.status: creating src/grad/Makefile
config.status: creating src/integral/Makefile
config.status: creating src/scf/Makefile
config.status: creating src/df/Makefile
config.status: creating src/prop/Makefile
config.status: creating src/smith/Makefile
config.status: creating src/molecule/Makefile
config.status: creating src/pt2/Makefile
config.status: creating src/ci/Makefile
config.status: creating src/ci/ciutil/Makefile
config.status: creating src/ci/fci/Makefile
config.status: creating src/ci/zfci/Makefile
config.status: creating src/ci/ras/Makefile
config.status: creating src/response/Makefile
config.status: creating src/multi/Makefile
config.status: creating src/multi/casscf/Makefile
config.status: creating src/multi/zcasscf/Makefile
config.status: creating src/mat1e/Makefile
config.status: creating src/opt/Makefile
config.status: creating src/basis/Makefile
config.status: creating bagel_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
===========================================================================
=======================<phase: build          >============================
===>  Building for bagel-1.2.2_4
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2'
gmake  all-recursive
gmake[2]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2'
Making all in src
gmake[3]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src'
Making all in util
gmake[4]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/util'
Making all in parallel
gmake[5]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/util/parallel'
/bin/sh ../../../libtool  --tag=CXX   --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../..   -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing   -isystem /usr/local/include -std=c++11  -MT process.lo -MD -MP -MF .deps/process.Tpo -c -o process.lo process.cc
libtool: compile:  mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT process.lo -MD -MP -MF .deps/process.Tpo -c process.cc  -fPIC -DPIC -o .libs/process.o
mv -f .deps/process.Tpo .deps/process.Plo
/bin/sh ../../../libtool  --tag=CXX   --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../..   -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing   -isystem /usr/local/include -std=c++11  -MT mpi_interface.lo -MD -MP -MF .deps/mpi_interface.Tpo -c -o mpi_interface.lo mpi_interface.cc
libtool: compile:  mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT mpi_interface.lo -MD -MP -MF .deps/mpi_interface.Tpo -c mpi_interface.cc  -fPIC -DPIC -o .libs/mpi_interface.o
mpi_interface.cc:148:3: error: static_assert failed "size_t is assumed to be the same size as unsigned long long"
  static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
  ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpi_interface.cc:201:3: error: static_assert failed "size_t is assumed to be the same size as unsigned long long"
  static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
  ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpi_interface.cc:267:3: error: static_assert failed "size_t is assumed to be the same size as unsigned long long"
  static_assert(sizeof(size_t) == sizeof(unsigned long long), "size_t is assumed to be the same size as unsigned long long");
  ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3 errors generated.
gmake[5]: *** [Makefile:403: mpi_interface.lo] Error 1
gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/util/parallel'
gmake[4]: *** [Makefile:461: all-recursive] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/util'
gmake[3]: *** [Makefile:640: all-recursive] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src'
gmake[2]: *** [Makefile:421: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2'
gmake[1]: *** [Makefile:353: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/bagel



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