Date: Mon, 20 May 2019 09:12:42 +0000 (UTC) From: Wen Heping <wen@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r502097 - head/biology/libsbml Message-ID: <201905200912.x4K9CgoI092120@repo.freebsd.org>
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Author: wen Date: Mon May 20 09:12:41 2019 New Revision: 502097 URL: https://svnweb.freebsd.org/changeset/ports/502097 Log: - Update to 5.18.0 Modified: head/biology/libsbml/Makefile head/biology/libsbml/distinfo head/biology/libsbml/pkg-plist Modified: head/biology/libsbml/Makefile ============================================================================== --- head/biology/libsbml/Makefile Mon May 20 09:12:04 2019 (r502096) +++ head/biology/libsbml/Makefile Mon May 20 09:12:41 2019 (r502097) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= libsbml -PORTVERSION= 5.17.0 +PORTVERSION= 5.18.0 CATEGORIES= biology devel MASTER_SITES= SF/sbml/${PORTNAME}/${PORTVERSION}/stable DISTNAME= libSBML-${PORTVERSION}-core-src Modified: head/biology/libsbml/distinfo ============================================================================== --- head/biology/libsbml/distinfo Mon May 20 09:12:04 2019 (r502096) +++ head/biology/libsbml/distinfo Mon May 20 09:12:41 2019 (r502097) @@ -1,3 +1,3 @@ -TIMESTAMP = 1529913224 -SHA256 (libSBML-5.17.0-core-src.tar.gz) = ab2bd29720e8d5a92166eb3eacc8d77b34e3f94a83ac19924708e1b0e4317494 -SIZE (libSBML-5.17.0-core-src.tar.gz) = 14767045 +TIMESTAMP = 1558342307 +SHA256 (libSBML-5.18.0-core-src.tar.gz) = 900a8a41682c6fe69b162bce45e4221d7e23f30acb6c3d3516d1d931f353936a +SIZE (libSBML-5.18.0-core-src.tar.gz) = 14630152 Modified: head/biology/libsbml/pkg-plist ============================================================================== --- head/biology/libsbml/pkg-plist Mon May 20 09:12:04 2019 (r502096) +++ head/biology/libsbml/pkg-plist Mon May 20 09:12:41 2019 (r502097) @@ -105,32 +105,9 @@ include/sbml/extension/SBaseExtensionPoint.h include/sbml/extension/SBasePlugin.h include/sbml/extension/SBasePluginCreator.h include/sbml/extension/SBasePluginCreatorBase.h -include/sbml/math/ASTBase.h -include/sbml/math/ASTBinaryFunctionNode.h -include/sbml/math/ASTCSymbol.h -include/sbml/math/ASTCSymbolAvogadroNode.h -include/sbml/math/ASTCSymbolDelayNode.h -include/sbml/math/ASTCSymbolRateOfNode.h -include/sbml/math/ASTCSymbolTimeNode.h -include/sbml/math/ASTCiFunctionNode.h -include/sbml/math/ASTCiNumberNode.h -include/sbml/math/ASTCnBase.h -include/sbml/math/ASTCnExponentialNode.h -include/sbml/math/ASTCnIntegerNode.h -include/sbml/math/ASTCnRationalNode.h -include/sbml/math/ASTCnRealNode.h -include/sbml/math/ASTConstantNumberNode.h -include/sbml/math/ASTFunction.h -include/sbml/math/ASTFunctionBase.h -include/sbml/math/ASTLambdaFunctionNode.h -include/sbml/math/ASTNaryFunctionNode.h include/sbml/math/ASTNode.h -include/sbml/math/ASTNumber.h -include/sbml/math/ASTPiecewiseFunctionNode.h -include/sbml/math/ASTQualifierNode.h -include/sbml/math/ASTSemanticsNode.h -include/sbml/math/ASTTypes.h -include/sbml/math/ASTUnaryFunctionNode.h +include/sbml/math/ASTNodeType.h +include/sbml/math/DefinitionURLRegistry.h include/sbml/math/FormulaFormatter.h include/sbml/math/FormulaParser.h include/sbml/math/FormulaTokenizer.h @@ -138,14 +115,28 @@ include/sbml/math/L3FormulaFormatter.h include/sbml/math/L3Parser.h include/sbml/math/L3ParserSettings.h include/sbml/math/MathML.h +include/sbml/packages/l3v2extendedmath/common/L3v2extendedmathExtensionTypes.h +include/sbml/packages/l3v2extendedmath/common/l3v2extendedmathfwd.h +include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h +include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.h +include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h +include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.h +include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLError.h +include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLErrorTable.h +include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.h +include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h +include/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.h +include/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.h include/sbml/units/FormulaUnitsData.h include/sbml/units/UnitFormulaFormatter.h include/sbml/units/UnitKindList.h +include/sbml/util/CallbackRegistry.h include/sbml/util/ElementFilter.h include/sbml/util/IdFilter.h include/sbml/util/IdList.h include/sbml/util/IdentifierTransformer.h include/sbml/util/List.h +include/sbml/util/MathFilter.h include/sbml/util/MetaIdFilter.h include/sbml/util/PrefixTransformer.h include/sbml/util/Stack.h @@ -436,6 +427,7 @@ lib/cmake/sbml-static-config.cmake %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/echoSBML.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/evaluateCustomMath.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/getAllElementsWithNotes.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/inlineFunctionDefinitions.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/inlineInitialAssignments.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/layout/convertLayout.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/layout/example1-L3.py @@ -458,6 +450,7 @@ lib/cmake/sbml-static-config.cmake %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/unsetAnnotation.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/unsetNotes.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/validateSBML.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/validateSBMLWithCallback.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/addCVTerms.R %%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/addModelHistory.R %%PORTEXAMPLES%%%%EXAMPLESDIR%%/r/addingEvidenceCodes_1.R
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