Date: Mon, 13 Jun 2005 10:44:09 +0900 From: Sangwoo Shim <ssw@neo.redjade.org> To: Osmany Guirola Cruz <osmany.guirola@cigb.edu.cu> Cc: ports@FreeBSD.org Subject: Re: FreeBSD Port: vmd-1.8.3 Message-ID: <20050613014409.GA6812@neo.redjade.org> In-Reply-To: <1118408812.39439.13.camel@draco.cigb.edu.cu> References: <1118408812.39439.13.camel@draco.cigb.edu.cu>
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On Fri, Jun 10, 2005 at 01:06:51PM +0000, Osmany Guirola Cruz wrote: > Hi > i am using vmd port and found little no so serious bugs > when i try to do a cartoon representation of a protein i get > this errors in the vmd console > ERROR) Unable to open input file '/usr/tmp/tmp.n8ebrB' for writing. > ERROR) Stride::write_stride_record: unable to write input file for > Stride > ERROR) Call to Stride program failed. > i can't write to folder /usr/tmp/ but i supose that the original path > shoud be /tmp/ and then can have write permissions > i create the folder /usr/tmp/ and then as root run the program without > problems , this is not so serious but should be fixed.... I've also noticed this. I put the routines that prints TMPDIR in Stride.C and tried cartoon representation. It seems that vmd set TMPDIR to /usr/tmp before calling tempnam() but I couldn't find any spot setting TMPDIR when I tried to find a while ago :-) You can set TMPDIR=/tmp before excuting vmd for the workarounds. My last term exams and projects will be over today, so hopefully I can look into this really soon. Thanks for the reminder. > > Thanks for mantain a bioinformatic tool in the port tree :-) You're welcome :) I'm gratuate student majoring in chemistry and use this tool daily. What a cool stuff, huh? ;) Regards, Sangwoo Shim > > Osmany >
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