From nobody Sun Nov 7 01:34:53 2021 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 75A61184B2A8; Sun, 7 Nov 2021 01:34:53 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Hmxcs2vZXz4nwr; Sun, 7 Nov 2021 01:34:53 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 43109155F7; Sun, 7 Nov 2021 01:34:53 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 1A71Yrdt044593; Sun, 7 Nov 2021 01:34:53 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 1A71Yrfw044592; Sun, 7 Nov 2021 01:34:53 GMT (envelope-from git) Date: Sun, 7 Nov 2021 01:34:53 GMT Message-Id: <202111070134.1A71Yrfw044592@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-branches@FreeBSD.org From: Yuri Victorovich Subject: git: 95cd93086e6f - 2021Q4 - biology/treekin: Unbreak List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/2021Q4 X-Git-Reftype: branch X-Git-Commit: 95cd93086e6fb0a44865d86a95486dfa59c16a83 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch 2021Q4 has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=95cd93086e6fb0a44865d86a95486dfa59c16a83 commit 95cd93086e6fb0a44865d86a95486dfa59c16a83 Author: Yuri Victorovich AuthorDate: 2021-10-15 15:47:33 +0000 Commit: Yuri Victorovich CommitDate: 2021-11-07 01:34:50 +0000 biology/treekin: Unbreak Recent Lapack API changes broke it. PR: 259179 (cherry picked from commit c16b145a0f292e0aaf321c7b48681ccd63f7280b) --- biology/treekin/files/patch-src_calcpp.h | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/biology/treekin/files/patch-src_calcpp.h b/biology/treekin/files/patch-src_calcpp.h index a4a06105feb8..ce61918e34e0 100644 --- a/biology/treekin/files/patch-src_calcpp.h +++ b/biology/treekin/files/patch-src_calcpp.h @@ -1,3 +1,5 @@ +- patch for latest breaking Lapack API changes, see https://github.com/Reference-LAPACK/lapack/issues/604#issuecomment-944069793 + --- src/calcpp.h.orig 2019-06-13 14:11:19 UTC +++ src/calcpp.h @@ -49,6 +49,9 @@ @@ -10,3 +12,23 @@ # include # else # ifdef HAVE_OPENBLAS_LAPACKE_H +@@ -311,7 +314,8 @@ Calccpp::Mx_Dsyevx(const char *jobz, + /*default standard lapack */ + ::dsyevx_((char *)jobz, (char *)range, (char *)uplo, n, (double *)a, lda, (double *)vl, + (double *)vu, il, iu, (double *)abstol, m, (double *)w, +- (double *)z, ldz, (double *)work, lwork, iwork, ifail, info); ++ (double *)z, ldz, (double *)work, lwork, iwork, ifail, info, ++ int(0) /*jobz_int*/, int(0) /*range_int*/, int(0) /*uplo_int*/); // "int" after the "info" parameter for each "char*" argument in the list + break; + } + } +@@ -367,7 +371,8 @@ Calccpp::Mx_Dgeevx(const char *balanc, + (double *)wr, (double *)wi, (double *)vl, ldvl, + (double *)vr, ldvr, ilo, ihi, (double *)scale, (double *)abnrm, (double *)rconde, + (double *)rcondv, (double *)work, +- lwork, iwork, info); ++ lwork, iwork, info, ++ int(0) /*balanc_int*/, int(0) /*jobvl_int*/, int(0) /*jobvr_int*/, int(0) /*sense_int*/); // "int" after the "info" parameter for each "char*" argument in the list + break; + } + }