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Date:      Sun, 22 Dec 2002 17:21:02 +0900
From:      KATO Tsuguru <tkato@prontomail.com>
To:        FreeBSD-gnats-submit@FreeBSD.org
Subject:   ports/46459: Update port: biology/libgenome
Message-ID:  <20021222172102.4bee9d36.tkato@prontomail.com>

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>Number:         46459
>Category:       ports
>Synopsis:       Update port: biology/libgenome
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Sun Dec 22 01:10:00 PST 2002
>Closed-Date:
>Last-Modified:
>Originator:     KATO Tsuguru
>Release:        FreeBSD 4.7-RELEASE-p2 i386
>Organization:
>Environment:
>Description:
- Fix build on 5-current

New file:
files/patch-include::gn::gnCompare.h
files/patch-include::gn::gnException.h
files/patch-include::gn::gnFileContig.h
files/patch-include::gn::gnSourceHeader.h
files/patch-include::gn::gnSourceQualifier.h

>How-To-Repeat:
>Fix:

diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnCompare.h biology/libgenome/files/patch-include::gn::gnCompare.h
--- /usr/ports/biology/libgenome/files/patch-include::gn::gnCompare.h	Thu Jan  1 09:00:00 1970
+++ biology/libgenome/files/patch-include::gn::gnCompare.h	Sun Dec 22 12:10:25 2002
@@ -0,0 +1,10 @@
+--- include/gn/gnCompare.h.orig	Tue Nov 20 09:23:47 2001
++++ include/gn/gnCompare.h	Sun Dec 22 09:45:37 2002
+@@ -15,6 +15,7 @@
+ 
+ #include "gn/gnDefs.h"
+ 
++#include <cctype>
+ #include <string>
+ #include "gn/gnClone.h"
+ 
diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnException.h biology/libgenome/files/patch-include::gn::gnException.h
--- /usr/ports/biology/libgenome/files/patch-include::gn::gnException.h	Thu Jan  1 09:00:00 1970
+++ biology/libgenome/files/patch-include::gn::gnException.h	Sun Dec 22 12:46:58 2002
@@ -0,0 +1,10 @@
+--- include/gn/gnException.h.orig	Sat Dec  1 05:57:29 2001
++++ include/gn/gnException.h	Sun Dec 22 12:44:39 2002
+@@ -4,6 +4,7 @@
+ #include "gnClone.h"
+ #include "gn/gnExceptionCode.h"
+ #include <string>
++#include <iostream>
+ #include <list>
+ 
+ class GNDLLEXPORT gnException
diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnFileContig.h biology/libgenome/files/patch-include::gn::gnFileContig.h
--- /usr/ports/biology/libgenome/files/patch-include::gn::gnFileContig.h	Thu Jan  1 09:00:00 1970
+++ biology/libgenome/files/patch-include::gn::gnFileContig.h	Sun Dec 22 12:55:46 2002
@@ -0,0 +1,11 @@
+--- include/gn/gnFileContig.h.orig	Wed Jul 18 01:52:09 2001
++++ include/gn/gnFileContig.h	Sun Dec 22 12:51:21 2002
+@@ -17,7 +17,7 @@
+ 
+ #include <string>
+ #include "gn/gnClone.h"
+-#ifdef __GNUG__
++#if (defined(__GNUC__) && (__GNUC__) < 3)
+ #include "pair.h"
+ #endif
+ 
diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceHeader.h biology/libgenome/files/patch-include::gn::gnSourceHeader.h
--- /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceHeader.h	Thu Jan  1 09:00:00 1970
+++ biology/libgenome/files/patch-include::gn::gnSourceHeader.h	Sun Dec 22 12:56:07 2002
@@ -0,0 +1,11 @@
+--- include/gn/gnSourceHeader.h.orig	Tue Oct 16 02:59:53 2001
++++ include/gn/gnSourceHeader.h	Sun Dec 22 12:50:29 2002
+@@ -19,7 +19,7 @@
+ #include "gn/gnBaseHeader.h"
+ #include "gn/gnBaseSource.h"
+ 
+-#ifdef __GNUG__
++#if (defined(__GNUC__) && (__GNUC__) < 3)
+ #include "pair.h"
+ #endif
+ 
diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceQualifier.h biology/libgenome/files/patch-include::gn::gnSourceQualifier.h
--- /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceQualifier.h	Thu Jan  1 09:00:00 1970
+++ biology/libgenome/files/patch-include::gn::gnSourceQualifier.h	Sun Dec 22 12:55:34 2002
@@ -0,0 +1,11 @@
+--- include/gn/gnSourceQualifier.h.orig	Tue Oct 16 02:59:53 2001
++++ include/gn/gnSourceQualifier.h	Sun Dec 22 12:48:20 2002
+@@ -19,7 +19,7 @@
+ #include "gn/gnBaseQualifier.h"
+ #include "gn/gnBaseSource.h"
+ 
+-#ifdef __GNUG__
++#if (defined(__GNUC__) && (__GNUC__) < 3)
+ #include "pair.h"
+ #endif
+ 
>Release-Note:
>Audit-Trail:
>Unformatted:

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