Date: Tue, 8 Dec 2009 16:45:45 +0100 (CET) From: Florian Smeets <flo@kasimir.com> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/141284: [MAINTAINER] science/gromacs: update to 4.0.7 Message-ID: <20091208154545.932983F49A@mail.solomo.de> Resent-Message-ID: <200912081550.nB8Fo5wO003436@freefall.freebsd.org>
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>Number: 141284 >Category: ports >Synopsis: [MAINTAINER] science/gromacs: update to 4.0.7 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Tue Dec 08 15:50:05 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Florian Smeets >Release: FreeBSD 7.2-STABLE amd64 >Organization: >Environment: System: FreeBSD mail.solomo.de 7.2-STABLE FreeBSD 7.2-STABLE #10: Fri Oct 16 15:21:55 CEST 2009 >Description: - Update to 4.0.7 Removed file(s): - files/patch-include__gmx_cyclecounter.h Generated with FreeBSD Port Tools 0.99 >How-To-Repeat: >Fix: --- gromacs-4.0.7.patch begins here --- diff -ruN --exclude=CVS /usr/ports/science/gromacs.orig/Makefile /usr/ports/science/gromacs/Makefile --- /usr/ports/science/gromacs.orig/Makefile 2009-12-08 16:04:24.000000000 +0100 +++ /usr/ports/science/gromacs/Makefile 2009-12-08 16:20:57.000000000 +0100 @@ -6,8 +6,7 @@ # PORTNAME= gromacs -PORTVERSION= 4.0.5 -PORTREVISION= 1 +PORTVERSION= 4.0.7 CATEGORIES= science MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ diff -ruN --exclude=CVS /usr/ports/science/gromacs.orig/distinfo /usr/ports/science/gromacs/distinfo --- /usr/ports/science/gromacs.orig/distinfo 2009-12-08 16:04:24.000000000 +0100 +++ /usr/ports/science/gromacs/distinfo 2009-12-08 16:21:07.000000000 +0100 @@ -1,3 +1,3 @@ -MD5 (gromacs-4.0.5.tar.gz) = 2db2261852a4d3a97547979f379dee94 -SHA256 (gromacs-4.0.5.tar.gz) = 436b7a2a1ba3637eb07e30d676d78962008373a28fd17a3d889fa5816ca30339 -SIZE (gromacs-4.0.5.tar.gz) = 8465397 +MD5 (gromacs-4.0.7.tar.gz) = 51369bd553e6bba4085a58bcf23d337d +SHA256 (gromacs-4.0.7.tar.gz) = 048f8ece2829f01d99f7e04e1d6e8f88d3a32273192274f2e9fcf71f41f212c1 +SIZE (gromacs-4.0.7.tar.gz) = 8404518 diff -ruN --exclude=CVS /usr/ports/science/gromacs.orig/files/patch-include__gmx_cyclecounter.h /usr/ports/science/gromacs/files/patch-include__gmx_cyclecounter.h --- /usr/ports/science/gromacs.orig/files/patch-include__gmx_cyclecounter.h 2009-12-08 16:04:24.000000000 +0100 +++ /usr/ports/science/gromacs/files/patch-include__gmx_cyclecounter.h 1970-01-01 01:00:00.000000000 +0100 @@ -1,11 +0,0 @@ ---- ./include/gmx_cyclecounter.h.orig 2009-03-31 13:25:55.036329291 +0200 -+++ ./include/gmx_cyclecounter.h 2009-03-31 13:26:11.504803886 +0200 -@@ -408,7 +408,7 @@ - static __inline__ gmx_cycles_t gmx_cycles_read(void) - { - /* gcc inline assembly on sparc v9 */ -- ticks ret; -+ gmx_cycles_t ret; - __asm__("rd %%tick, %0" : "=r" (ret)); - return ret; - } diff -ruN --exclude=CVS /usr/ports/science/gromacs.orig/pkg-plist /usr/ports/science/gromacs/pkg-plist --- /usr/ports/science/gromacs.orig/pkg-plist 2009-12-08 16:04:24.000000000 +0100 +++ /usr/ports/science/gromacs/pkg-plist 2009-12-08 16:35:01.000000000 +0100 @@ -490,15 +490,6 @@ %%DATADIR%%/top/ffG53a6bon.itp %%DATADIR%%/top/ffG53a6nb.itp %%DATADIR%%/top/ff_dum.itp -%%DATADIR%%/top/ffcharmm27.atp -%%DATADIR%%/top/ffcharmm27bon.itp -%%DATADIR%%/top/ffcharmm27-c.tdb -%%DATADIR%%/top/ffcharmm27.ddb -%%DATADIR%%/top/ffcharmm27.hdb -%%DATADIR%%/top/ffcharmm27.itp -%%DATADIR%%/top/ffcharmm27nb.itp -%%DATADIR%%/top/ffcharmm27-n.tdb -%%DATADIR%%/top/ffcharmm27.rtp %%DATADIR%%/top/ffencads-c.tdb %%DATADIR%%/top/ffencads-n.tdb %%DATADIR%%/top/ffencads.atp --- gromacs-4.0.7.patch ends here --- >Release-Note: >Audit-Trail: >Unformatted:
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