Date: Tue, 17 Oct 2017 15:44:18 GMT From: pkg-fallout@FreeBSD.org To: tota@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][science/R-cran-kernlab] Failed for R-cran-kernlab-0.9.25 in build-depends Message-ID: <201710171544.v9HFiIcI066260@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Last committer: tota@FreeBSD.org Ident: $FreeBSD: head/science/R-cran-kernlab/Makefile 449516 2017-09-10 07:06:04Z tota $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p452255_s324676/logs/R-cran-kernlab-0.9.25.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p452255_s324676 Log: ====>> Building science/R-cran-kernlab build started at Tue Oct 17 15:27:47 UTC 2017 port directory: /usr/ports/science/R-cran-kernlab building for: FreeBSD head-amd64-default-job-22 12.0-CURRENT FreeBSD 12.0-CURRENT 1200051 amd64 maintained by: tota@FreeBSD.org Makefile ident: $FreeBSD: head/science/R-cran-kernlab/Makefile 449516 2017-09-10 07:06:04Z tota $ Poudriere version: 3.1.21 Host OSVERSION: 1200042 Jail OSVERSION: 1200051 Job Id: 22 !!! Jail is newer than host. (Jail: 1200051, Host: 1200042) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200051 UNAME_v=FreeBSD 12.0-CURRENT 1200051 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-kernlab-0.9.25 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.21 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/R-cran-kernlab/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work HOME=/wrkdirs/usr/ports/science/R-cran-kernlab/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/R-cran-kernlab/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector - fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/kernlab OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/kernlab" EXAMPLESDIR="share/examples/kernlab" DATADIR="share/kernlab" WWWDIR="www/kernlab" ETCDIR="etc/kernlab" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/kernlab DOCSDIR=/usr/local/share/doc/kernlab EXAMPLESDIR=/usr/local/share/examples/kernlab WWWDIR=/usr/local/www/kernlab ETCDIR=/usr/local/etc/kernlab --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=amd64 CONFIGURE_MAX_CMD_LEN=262144 HAVE_COMPAT_IA32_KERN=YES OPSYS=FreeBSD OSREL=12.0 OSVERSION=1200051 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.9|1.6\+|1.7\+|1.8\+|1.9\+ _OSRELEASE=12.0-CURRENT #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-kernlab-0.9.25 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [head-amd64-default-job-22] Installing pkg-1.10.1... [head-amd64-default-job-22] Extracting pkg-1.10.1: .......... done ===> R-cran-kernlab-0.9.25 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-kernlab-0.9.25 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-kernlab-0.9.25 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-kernlab-0.9.25 for building => SHA256 Checksum OK for kernlab_0.9-25.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-kernlab-0.9.25 for building ===> Extracting for R-cran-kernlab-0.9.25 => SHA256 Checksum OK for kernlab_0.9-25.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-kernlab-0.9.25 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-kernlab-0.9.25 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.4.2.txz [head-amd64-default-job-22] Installing R-3.4.2... [head-amd64-default-job-22] `-- Installing cairo-1.14.8_1,2... [head-amd64-default-job-22] | `-- Installing dri2proto-2.8... [head-amd64-default-job-22] | `-- Extracting dri2proto-2.8: .... done [head-amd64-default-job-22] | `-- Installing fontconfig-2.12.1,1... [head-amd64-default-job-22] | | `-- Installing expat-2.2.1... [head-amd64-default-job-22] | | `-- Extracting expat-2.2.1: .......... done [head-amd64-default-job-22] | | `-- Installing freetype2-2.8... [head-amd64-default-job-22] | | `-- Extracting freetype2-2.8: .......... done [head-amd64-default-job-22] | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [head-amd64-default-job-22] | `-- Installing gettext-runtime-0.19.8.1_1... [head-amd64-default-job-22] | | `-- Installing indexinfo-0.2.6... [head-amd64-default-job-22] | | `-- Extracting indexinfo-0.2.6: .... done [head-amd64-default-job-22] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [head-amd64-default-job-22] | `-- Installing glib-2.50.2_6,1... [head-amd64-default-job-22] | | `-- Installing libffi-3.2.1_1... [head-amd64-default-job-22] | | `-- Extracting libffi-3.2.1_1: .......... done [head-amd64-default-job-22] | | `-- Installing libiconv-1.14_11... [head-amd64-default-job-22] | | `-- Extracting libiconv-1.14_11: .......... done [head-amd64-default-job-22] | | `-- Installing pcre-8.40_1... [head-amd64-default-job-22] | | `-- Extracting pcre-8.40_1: .......... done [head-amd64-default-job-22] | | `-- Installing perl5-5.24.3... [head-amd64-default-job-22] | | `-- Extracting perl5-5.24.3: .......... done [head-amd64-default-job-22] | | `-- Installing python27-2.7.14_1... [head-amd64-default-job-22] | | `-- Installing readline-7.0.3... [head-amd64-default-job-22] | | `-- Extracting readline-7.0.3: .......... done [head-amd64-default-job-22] | | `-- Extracting python27-2.7.14_1: .......... done [head-amd64-default-job-22] | `-- Extracting glib-2.50.2_6,1: .......... done No schema files found: doing nothing. [head-amd64-default-job-22] | `-- Installing glproto-1.4.17... [head-amd64-default-job-22] | `-- Extracting glproto-1.4.17: ...... done [head-amd64-default-job-22] | `-- Installing libX11-1.6.5,1... [head-amd64-default-job-22] | | `-- Installing kbproto-1.0.7... [head-amd64-default-job-22] | | `-- Extracting kbproto-1.0.7: .......... done [head-amd64-default-job-22] | | `-- Installing libXau-1.0.8_3... [head-amd64-default-job-22] | | `-- Installing xproto-7.0.31... [head-amd64-default-job-22] | | `-- Extracting xproto-7.0.31: .......... done [head-amd64-default-job-22] | | `-- Extracting libXau-1.0.8_3: .......... done [head-amd64-default-job-22] | | `-- Installing libXdmcp-1.1.2... [head-amd64-default-job-22] | | `-- Extracting libXdmcp-1.1.2: ......... done [head-amd64-default-job-22] | | `-- Installing libxcb-1.12_2... [head-amd64-default-job-22] | | `-- Installing libpthread-stubs-0.4... [head-amd64-default-job-22] | | `-- Extracting libpthread-stubs-0.4: . done [head-amd64-default-job-22] | | `-- Installing libxml2-2.9.4... [head-amd64-default-job-22] | | `-- Extracting libxml2-2.9.4: .......... done [head-amd64-default-job-22] | | `-- Extracting libxcb-1.12_2: .......... done [head-amd64-default-job-22] | `-- Extracting libX11-1.6.5,1: .......... done [head-amd64-default-job-22] | `-- Installing libXext-1.3.3_1,1... [head-amd64-default-job-22] | | `-- Installing xextproto-7.3.0... [head-amd64-default-job-22] | | `-- Extracting xextproto-7.3.0: .......... done [head-amd64-default-job-22] | `-- Extracting libXext-1.3.3_1,1: .......... done [head-amd64-default-job-22] | `-- Installing libXrender-0.9.10... [head-amd64-default-job-22] | | `-- Installing renderproto-0.11.1... [head-amd64-default-job-22] | | `-- Extracting renderproto-0.11.1: .... done [head-amd64-default-job-22] | `-- Extracting libXrender-0.9.10: .......... done [head-amd64-default-job-22] | `-- Installing mesa-libs-17.2.2... [head-amd64-default-job-22] | | `-- Installing libXdamage-1.1.4_3... [head-amd64-default-job-22] | | `-- Installing damageproto-1.2.1... [head-amd64-default-job-22] | | `-- Extracting damageproto-1.2.1: .... done [head-amd64-default-job-22] | | `-- Installing libXfixes-5.0.3... [head-amd64-default-job-22] | | | `-- Installing fixesproto-5.0... [head-amd64-default-job-22] | | | `-- Extracting fixesproto-5.0: .... done [head-amd64-default-job-22] | | `-- Extracting libXfixes-5.0.3: .......... done [head-amd64-default-job-22] | | `-- Extracting libXdamage-1.1.4_3: ...... done [head-amd64-default-job-22] | | `-- Installing libXxf86vm-1.1.4_1... [head-amd64-default-job-22] | | `-- Installing xf86vidmodeproto-2.3.1... [head-amd64-default-job-22] | | `-- Extracting xf86vidmodeproto-2.3.1: .... done [head-amd64-default-job-22] | | `-- Extracting libXxf86vm-1.1.4_1: .......... done [head-amd64-default-job-22] | | `-- Installing libdrm-2.4.83,1... [head-amd64-default-job-22] | | `-- Installing libpciaccess-0.13.5... [head-amd64-default-job-22] | | | `-- Installing pciids-20171011... [head-amd64-default-job-22] | | | `-- Extracting pciids-20171011: ..... done [head-amd64-default-job-22] | | `-- Extracting libpciaccess-0.13.5: ...... done [head-amd64-default-job-22] | | `-- Extracting libdrm-2.4.83,1: .......... done [head-amd64-default-job-22] | | `-- Installing libunwind-20170113_1... [head-amd64-default-job-22] | | `-- Extracting libunwind-20170113_1: .......... done [head-amd64-default-job-22] | | `-- Installing libxshmfence-1.2_2... [head-amd64-default-job-22] | | `-- Extracting libxshmfence-1.2_2: ......... done [head-amd64-default-job-22] | `-- Extracting mesa-libs-17.2.2: .......... done [head-amd64-default-job-22] | `-- Installing pixman-0.34.0... [head-amd64-default-job-22] | `-- Extracting pixman-0.34.0: .......... done [head-amd64-default-job-22] | `-- Installing png-1.6.34... [head-amd64-default-job-22] | `-- Extracting png-1.6.34: .......... done [head-amd64-default-job-22] | `-- Installing xcb-util-renderutil-0.3.9_1... [head-amd64-default-job-22] | | `-- Installing xcb-util-0.4.0_2,1... [head-amd64-default-job-22] | | `-- Extracting xcb-util-0.4.0_2,1: .......... done [head-amd64-default-job-22] | `-- Extracting xcb-util-renderutil-0.3.9_1: ...... done [head-amd64-default-job-22] `-- Extracting cairo-1.14.8_1,2: .......... done [head-amd64-default-job-22] `-- Installing curl-7.56.0... [head-amd64-default-job-22] | `-- Installing ca_root_nss-3.32.1... [head-amd64-default-job-22] | `-- Extracting ca_root_nss-3.32.1: ........ done [head-amd64-default-job-22] | `-- Installing libnghttp2-1.26.0... [head-amd64-default-job-22] | `-- Extracting libnghttp2-1.26.0: .......... done [head-amd64-default-job-22] `-- Extracting curl-7.56.0: .......... done [head-amd64-default-job-22] `-- Installing flang-4.0.20170812_1... [head-amd64-default-job-22] | `-- Installing flang-clang-4.0.20170812_1... [head-amd64-default-job-22] | | `-- Installing libedit-3.1.20170329_2,1... [head-amd64-default-job-22] | | `-- Extracting libedit-3.1.20170329_2,1: .......... done [head-amd64-default-job-22] | | `-- Installing llvm40-4.0.1_3... [head-amd64-default-job-22] | | `-- Extracting llvm40-4.0.1_3: .......... done [head-amd64-default-job-22] | | `-- Installing openmp-5.0.0... [head-amd64-default-job-22] | | `-- Extracting openmp-5.0.0: ........ done [head-amd64-default-job-22] | `-- Extracting flang-clang-4.0.20170812_1: .......... done Child process pid=62850 terminated abnormally: Killed *** Error code 137 Stop. make: stopped in /usr/ports/science/R-cran-kernlab
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