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Date:      Tue, 19 Jun 2018 01:20:35 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 111mips-quarterly][biology/iolib] Failed for io_lib-1.14.9 in build
Message-ID:  <201806190120.w5J1KZW1075732@beefy14.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     danilo@FreeBSD.org
Last committer: linimon@FreeBSD.org
Ident:          $FreeBSD: branches/2018Q2/biology/iolib/Makefile 440746 2017-05-13 03:35:51Z linimon $
Log URL:        http://beefy14.nyi.freebsd.org/data/111mips-quarterly/472729/logs/io_lib-1.14.9.log
Build URL:      http://beefy14.nyi.freebsd.org/build.html?mastername=111mips-quarterly&build=472729
Log:

=>> Building biology/iolib
build started at Tue Jun 19 01:12:24 UTC 2018
port directory: /usr/ports/biology/iolib
package name: io_lib-1.14.9
building for: FreeBSD 111mips-quarterly-job-06 11.1-RELEASE-p10 FreeBSD 11.1-RELEASE-p10 1101001 mips
maintained by: danilo@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2018Q2/biology/iolib/Makefile 440746 2017-05-13 03:35:51Z linimon $
Poudriere version: 3.2.7-1-g7087c444
Host OSVERSION: 1200062
Jail OSVERSION: 1101001
Job Id: 06

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SCRIPTPREFIX=/usr/local/share/poudriere
MASTERNAME=111mips-quarterly
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
PWD=/usr/local/poudriere/data/.m/111mips-quarterly/ref/.p/pool
SAVED_TERM=
PACKAGE_BUILDING=yes
POUDRIERE_BUILD_TYPE=bulk
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--MAINTAINER--
danilo@FreeBSD.org
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--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
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--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iolib/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iolib/work  HOME=/wrkdirs/usr/ports/biology/iolib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iolib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
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--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iolib/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iolib/work  HOME=/wrkdirs/usr/ports/biology/iolib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iolib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0  -fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/io_lib"  EXAMPLESDIR="share/examples/io_lib"  DATADIR="share/io_lib"  WWWDIR="www/io_lib"  ETCDIR="etc/io_lib"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/io_lib DOCSDIR=/usr/local/share/doc/io_lib EXAMPLESDIR=/usr/local/share/examples/io_lib  WWWDIR=/usr/local/www/io_lib ETCDIR=/usr/local/etc/io_lib
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BATCH=yes
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DISTDIR=/distfiles
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PACKAGE_BUILDING_FLAVORS=yes
MACHINE=mips
MACHINE_ARCH=mips
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
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#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
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_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=Using built-in specs. Target: mips-undermydesk-freebsd Configured with: FreeBSD/mips system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-EB" "-EB" "-melf32btsmip_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_9d218390_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_9d218390_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
_OBJC_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_9d218390=none
ARCH=mips
OPSYS=FreeBSD
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OSREL=11.1
OSVERSION=1101001
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UID=0
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CPP=/nxb-bin/usr/bin/cpp
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LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
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socket buffer size       (bytes, -b)  unlimited
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kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   io_lib-1.14.9 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5.txz
[111mips-quarterly-job-06] Installing pkg-1.10.5...
[111mips-quarterly-job-06] Extracting pkg-1.10.5: .......... done
===>   io_lib-1.14.9 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of io_lib-1.14.9
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
=> SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
===>  Extracting for io_lib-1.14.9
=> SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for io_lib-1.14.9
<snip>
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-misc_scf.lo -MD -MP -MF .deps/libstaden_read_la-misc_scf.Tpo -c misc_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-misc_scf.lo -MD -MP -MF .deps/libstaden_read_la-misc_scf.Tpo -c misc_scf.c -o libstaden_read_la-misc_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-misc_scf.Tpo .deps/libstaden_read_la-misc_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c read_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c read_scf.c -o libstaden_read_la-read_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-read_scf.Tpo .deps/libstaden_read_la-read_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-write_scf.lo -MD -MP -MF .deps/libstaden_read_la-write_scf.Tpo -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-write_scf.lo -MD -MP -MF .deps/libstaden_read_la-write_scf.Tpo -c write_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-write_scf.lo -MD -MP -MF .deps/libstaden_read_la-write_scf.Tpo -c write_scf.c -o libstaden_read_la-write_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-write_scf.Tpo .deps/libstaden_read_la-write_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c sff.c  -fPIC -DPIC -o .libs/libstaden_read_la-sff.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c sff.c -o libstaden_read_la-sff.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-sff.Tpo .deps/libstaden_read_la-sff.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c srf.c  -fPIC -DPIC -o .libs/libstaden_read_la-srf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c srf.c -o libstaden_read_la-srf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-srf.Tpo .deps/libstaden_read_la-srf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c array.c  -fPIC -DPIC -o .libs/libstaden_read_la-array.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c array.c -o libstaden_read_la-array.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-array.Tpo .deps/libstaden_read_la-array.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c compress.c  -fPIC -DPIC -o .libs/libstaden_read_la-compress.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c compress.c -o libstaden_read_la-compress.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-compress.Tpo .deps/libstaden_read_la-compress.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c error.c  -fPIC -DPIC -o .libs/libstaden_read_la-error.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c error.c -o libstaden_read_la-error.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-error.Tpo .deps/libstaden_read_la-error.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-files.lo -MD -MP -MF .deps/libstaden_read_la-files.Tpo -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-files.lo -MD -MP -MF .deps/libstaden_read_la-files.Tpo -c files.c  -fPIC -DPIC -o .libs/libstaden_read_la-files.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-files.lo -MD -MP -MF .deps/libstaden_read_la-files.Tpo -c files.c -o libstaden_read_la-files.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-files.Tpo .deps/libstaden_read_la-files.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c find.c  -fPIC -DPIC -o .libs/libstaden_read_la-find.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c find.c -o libstaden_read_la-find.o >/dev/null 2>&1
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libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-mach-io.lo -MD -MP -MF .deps/libstaden_read_la-mach-io.Tpo -c mach-io.c  -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-mach-io.lo -MD -MP -MF .deps/libstaden_read_la-mach-io.Tpo -c mach-io.c -o libstaden_read_la-mach-io.o >/dev/null 2>&1
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libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-open_trace_file.lo -MD -MP -MF .deps/libstaden_read_la-open_trace_file.Tpo -c open_trace_file.c  -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-open_trace_file.lo -MD -MP -MF .deps/libstaden_read_la-open_trace_file.Tpo -c open_trace_file.c -o libstaden_read_la-open_trace_file.o >/dev/null 2>&1
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libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_alloc.lo -MD -MP -MF .deps/libstaden_read_la-read_alloc.Tpo -c read_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_alloc.lo -MD -MP -MF .deps/libstaden_read_la-read_alloc.Tpo -c read_alloc.c -o libstaden_read_la-read_alloc.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-strings.lo -MD -MP -MF .deps/libstaden_read_la-strings.Tpo -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-strings.lo -MD -MP -MF .deps/libstaden_read_la-strings.Tpo -c strings.c  -fPIC -DPIC -o .libs/libstaden_read_la-strings.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-strings.lo -MD -MP -MF .deps/libstaden_read_la-strings.Tpo -c strings.c -o libstaden_read_la-strings.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-traceType.lo -MD -MP -MF .deps/libstaden_read_la-traceType.Tpo -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-traceType.lo -MD -MP -MF .deps/libstaden_read_la-traceType.Tpo -c traceType.c  -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-traceType.lo -MD -MP -MF .deps/libstaden_read_la-traceType.Tpo -c traceType.c -o libstaden_read_la-traceType.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-xalloc.lo -MD -MP -MF .deps/libstaden_read_la-xalloc.Tpo -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-xalloc.lo -MD -MP -MF .deps/libstaden_read_la-xalloc.Tpo -c xalloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-xalloc.lo -MD -MP -MF .deps/libstaden_read_la-xalloc.Tpo -c xalloc.c -o libstaden_read_la-xalloc.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-vlen.lo -MD -MP -MF .deps/libstaden_read_la-vlen.Tpo -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-vlen.lo -MD -MP -MF .deps/libstaden_read_la-vlen.Tpo -c vlen.c  -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-vlen.lo -MD -MP -MF .deps/libstaden_read_la-vlen.Tpo -c vlen.c -o libstaden_read_la-vlen.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-hash_table.lo -MD -MP -MF .deps/libstaden_read_la-hash_table.Tpo -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-hash_table.lo -MD -MP -MF .deps/libstaden_read_la-hash_table.Tpo -c hash_table.c  -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-hash_table.lo -MD -MP -MF .deps/libstaden_read_la-hash_table.Tpo -c hash_table.c -o libstaden_read_la-hash_table.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF .deps/libstaden_read_la-jenkins_lookup3.Tpo -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF .deps/libstaden_read_la-jenkins_lookup3.Tpo -c jenkins_lookup3.c  -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF .deps/libstaden_read_la-jenkins_lookup3.Tpo -c jenkins_lookup3.c -o libstaden_read_la-jenkins_lookup3.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-mFILE.lo -MD -MP -MF .deps/libstaden_read_la-mFILE.Tpo -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-mFILE.lo -MD -MP -MF .deps/libstaden_read_la-mFILE.Tpo -c mFILE.c  -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-mFILE.lo -MD -MP -MF .deps/libstaden_read_la-mFILE.Tpo -c mFILE.c -o libstaden_read_la-mFILE.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-pooled_alloc.lo -MD -MP -MF .deps/libstaden_read_la-pooled_alloc.Tpo -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-pooled_alloc.lo -MD -MP -MF .deps/libstaden_read_la-pooled_alloc.Tpo -c pooled_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-pooled_alloc.lo -MD -MP -MF .deps/libstaden_read_la-pooled_alloc.Tpo -c pooled_alloc.c -o libstaden_read_la-pooled_alloc.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-bam.lo -MD -MP -MF .deps/libstaden_read_la-bam.Tpo -c -o libstaden_read_la-bam.lo `test -f 'bam.c' || echo './'`bam.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-bam.lo -MD -MP -MF .deps/libstaden_read_la-bam.Tpo -c bam.c  -fPIC -DPIC -o .libs/libstaden_read_la-bam.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-bam.lo -MD -MP -MF .deps/libstaden_read_la-bam.Tpo -c bam.c -o libstaden_read_la-bam.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-sam_header.lo -MD -MP -MF .deps/libstaden_read_la-sam_header.Tpo -c -o libstaden_read_la-sam_header.lo `test -f 'sam_header.c' || echo './'`sam_header.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sam_header.lo -MD -MP -MF .deps/libstaden_read_la-sam_header.Tpo -c sam_header.c  -fPIC -DPIC -o .libs/libstaden_read_la-sam_header.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sam_header.lo -MD -MP -MF .deps/libstaden_read_la-sam_header.Tpo -c sam_header.c -o libstaden_read_la-sam_header.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-rANS_static.lo -MD -MP -MF .deps/libstaden_read_la-rANS_static.Tpo -c -o libstaden_read_la-rANS_static.lo `test -f 'rANS_static.c' || echo './'`rANS_static.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-rANS_static.lo -MD -MP -MF .deps/libstaden_read_la-rANS_static.Tpo -c rANS_static.c  -fPIC -DPIC -o .libs/libstaden_read_la-rANS_static.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-rANS_static.lo -MD -MP -MF .deps/libstaden_read_la-rANS_static.Tpo -c rANS_static.c -o libstaden_read_la-rANS_static.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_codecs.lo -MD -MP -MF .deps/libstaden_read_la-cram_codecs.Tpo -c -o libstaden_read_la-cram_codecs.lo `test -f 'cram_codecs.c' || echo './'`cram_codecs.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_codecs.lo -MD -MP -MF .deps/libstaden_read_la-cram_codecs.Tpo -c cram_codecs.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_codecs.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_codecs.lo -MD -MP -MF .deps/libstaden_read_la-cram_codecs.Tpo -c cram_codecs.c -o libstaden_read_la-cram_codecs.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_encode.lo -MD -MP -MF .deps/libstaden_read_la-cram_encode.Tpo -c -o libstaden_read_la-cram_encode.lo `test -f 'cram_encode.c' || echo './'`cram_encode.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_encode.lo -MD -MP -MF .deps/libstaden_read_la-cram_encode.Tpo -c cram_encode.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_encode.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_encode.lo -MD -MP -MF .deps/libstaden_read_la-cram_encode.Tpo -c cram_encode.c -o libstaden_read_la-cram_encode.o >/dev/null 2>&1
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/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF .deps/libstaden_read_la-cram_decode.Tpo -c -o libstaden_read_la-cram_decode.lo `test -f 'cram_decode.c' || echo './'`cram_decode.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF .deps/libstaden_read_la-cram_decode.Tpo -c cram_decode.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_decode.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF .deps/libstaden_read_la-cram_decode.Tpo -c cram_decode.c -o libstaden_read_la-cram_decode.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_decode.Tpo .deps/libstaden_read_la-cram_decode.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c -o libstaden_read_la-cram_stats.lo `test -f 'cram_stats.c' || echo './'`cram_stats.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c cram_stats.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_stats.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c cram_stats.c -o libstaden_read_la-cram_stats.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_stats.Tpo .deps/libstaden_read_la-cram_stats.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c -o libstaden_read_la-cram_io.lo `test -f 'cram_io.c' || echo './'`cram_io.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c cram_io.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_io.o
cram_io.c: In function 'paranoid_fclose':
cram_io.c:2292: warning: implicit declaration of function 'fsync'
cram_io.c: In function 'cram_populate_ref':
cram_io.c:2903: warning: implicit declaration of function 'unlink'
cram_io.c: In function 'full_path':
cram_io.c:4288: warning: implicit declaration of function 'getcwd'
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c cram_io.c -o libstaden_read_la-cram_io.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_io.Tpo .deps/libstaden_read_la-cram_io.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c -o libstaden_read_la-cram_index.lo `test -f 'cram_index.c' || echo './'`cram_index.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c cram_index.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_index.o
cram_index.c: In function 'cram_index_load_private':
cram_index.c:183: warning: 'e.nseq' is used uninitialized in this function
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c cram_index.c -o libstaden_read_la-cram_index.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_index.Tpo .deps/libstaden_read_la-cram_index.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c -o libstaden_read_la-zfio.lo `test -f 'zfio.c' || echo './'`zfio.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c zfio.c  -fPIC -DPIC -o .libs/libstaden_read_la-zfio.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c zfio.c -o libstaden_read_la-zfio.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-zfio.Tpo .deps/libstaden_read_la-zfio.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c -o libstaden_read_la-dstring.lo `test -f 'dstring.c' || echo './'`dstring.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c dstring.c  -fPIC -DPIC -o .libs/libstaden_read_la-dstring.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c dstring.c -o libstaden_read_la-dstring.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-dstring.Tpo .deps/libstaden_read_la-dstring.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c -o libstaden_read_la-string_alloc.lo `test -f 'string_alloc.c' || echo './'`string_alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c string_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-string_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c string_alloc.c -o libstaden_read_la-string_alloc.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-string_alloc.Tpo .deps/libstaden_read_la-string_alloc.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c -o libstaden_read_la-md5.lo `test -f 'md5.c' || echo './'`md5.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c md5.c  -fPIC -DPIC -o .libs/libstaden_read_la-md5.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c md5.c -o libstaden_read_la-md5.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-md5.Tpo .deps/libstaden_read_la-md5.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c -o libstaden_read_la-crc32.lo `test -f 'crc32.c' || echo './'`crc32.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c crc32.c  -fPIC -DPIC -o .libs/libstaden_read_la-crc32.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c crc32.c -o libstaden_read_la-crc32.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-crc32.Tpo .deps/libstaden_read_la-crc32.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c -o libstaden_read_la-scram.lo `test -f 'scram.c' || echo './'`scram.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c scram.c  -fPIC -DPIC -o .libs/libstaden_read_la-scram.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c scram.c -o libstaden_read_la-scram.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-scram.Tpo .deps/libstaden_read_la-scram.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c -o libstaden_read_la-thread_pool.lo `test -f 'thread_pool.c' || echo './'`thread_pool.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c  -fPIC -DPIC -o .libs/libstaden_read_la-thread_pool.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c -o libstaden_read_la-thread_pool.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-thread_pool.Tpo .deps/libstaden_read_la-thread_pool.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c -o libstaden_read_la-binning.lo `test -f 'binning.c' || echo './'`binning.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c binning.c  -fPIC -DPIC -o .libs/libstaden_read_la-binning.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c binning.c -o libstaden_read_la-binning.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-binning.Tpo .deps/libstaden_read_la-binning.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c cram_bambam.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_bambam.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c cram_bambam.c -o libstaden_read_la-cram_bambam.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_bambam.Tpo .deps/libstaden_read_la-cram_bambam.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  -fno-strict-aliasing -MT libstaden_read_la-bgzip.lo -MD -MP -MF .deps/libstaden_read_la-bgzip.Tpo -c -o libstaden_read_la-bgzip.lo `test -f 'bgzip.c' || echo './'`bgzip.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-bgzip.lo -MD -MP -MF .deps/libstaden_read_la-bgzip.Tpo -c bgzip.c  -fPIC -DPIC -o .libs/libstaden_read_la-bgzip.o
bgzip.c: In function 'gzi_index_dump':
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int')
gmake[3]: *** [Makefile:1014: libstaden_read_la-bgzip.lo] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9/io_lib'
gmake[2]: *** [Makefile:746: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9'
gmake[1]: *** [Makefile:491: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/iolib



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