From owner-freebsd-pkg-fallout@FreeBSD.ORG Thu Nov 14 18:06:55 2013 Return-Path: Delivered-To: pkg-fallout@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 267BCEA7 for ; Thu, 14 Nov 2013 18:06:55 +0000 (UTC) Received: from beefy2.isc.freebsd.org (beefy2.isc.freebsd.org [IPv6:2001:4f8:3:ffe0:4072:0:16:39]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 06E3A20FD; Thu, 14 Nov 2013 18:06:55 +0000 (UTC) Received: from beefy2.isc.freebsd.org (localhost [127.0.0.1]) by beefy2.isc.freebsd.org (8.14.7/8.14.7) with ESMTP id rAEI6snX003734; Thu, 14 Nov 2013 18:06:54 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy2.isc.freebsd.org (8.14.7/8.14.7/Submit) id rAEI6smA003400; Thu, 14 Nov 2013 18:06:54 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 14 Nov 2013 18:06:54 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201311141806.rAEI6smA003400@beefy2.isc.freebsd.org> To: jwbacon@tds.net Subject: [REL - head-amd64-default][science/minc2] Failed for minc2-2.2.00_1 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.16 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 14 Nov 2013 18:06:55 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwbacon@tds.net Last committer: bapt@FreeBSD.org Ident: $FreeBSD: head/science/minc2/Makefile 330275 2013-10-14 06:52:32Z bapt $ Log URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2013-11-14_03h52m22s/logs/minc2-2.2.00_1.log Build URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2013-11-14_03h52m22s Log: ====>> Building science/minc2 build started at Thu Nov 14 18:06:40 UTC 2013 port directory: /usr/ports/science/minc2 building for: FreeBSD head-amd64-default-job-14 11.0-CURRENT FreeBSD 11.0-CURRENT r256430 amd64 maintained by: jwbacon@tds.net Makefile ident: $FreeBSD: head/science/minc2/Makefile 330275 2013-10-14 06:52:32Z bapt $ Poudriere version: 3.1-pre ---Begin Environment--- OSVERSION=1100000 UNAME_v=FreeBSD 11.0-CURRENT r256430 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref PKG_EXT=txz tpid=88567 POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=minc2-2.2.00_1 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root/poudriere MASTERNAME=head-amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS=" -I/usr/local/include -DH5_USE_16_API" LDFLAGS=" -L/usr/local/lib -pthread" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/minc DOCSDIR=/usr/local/share/doc/minc EXAMPLESDIR=/usr/local/share/examples/minc WWWDIR=/usr/local/www/minc ETCDIR=/usr/local/etc/minc --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for minc2-2.2.00_1 =================================================== =========================================================================== =================================================== ===> minc2-2.2.00_1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_8.txz Installing pkg-1.1.4_8... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of minc2-2.2.00_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by minc2-2.2.00_1 for building =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by minc2-2.2.00_1 for building => SHA256 Checksum OK for minc-2.2.00.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by minc2-2.2.00_1 for building ===> Extracting for minc2-2.2.00_1 => SHA256 Checksum OK for minc-2.2.00.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for minc2-2.2.00_1 =========================================================================== =================================================== ===> minc2-2.2.00_1 depends on file: /usr/local/bin/cmake - not found ===> Verifying install for /usr/local/bin/cmake in /usr/ports/devel/cmake ===> Installing existing package /packages/All/cmake-2.8.12.txz Installing cmake-2.8.12...Installing cmake-modules-2.8.12... done done ===> Returning to build of minc2-2.2.00_1 ===> minc2-2.2.00_1 depends on executable: bison - not found ===> Verifying install for bison in /usr/ports/devel/bison ===> Installing existing package /packages/All/bison-2.7.1,1.txz Installing bison-2.7.1,1...Installing m4-1.4.17,1... done Installing gettext-0.18.3.1... done done ===> Returning to build of minc2-2.2.00_1 =========================================================================== =================================================== ===> minc2-2.2.00_1 depends on shared library: netcdf.4 - not found ===> Verifying install for netcdf.4 in /usr/ports/science/netcdf ===> Installing existing package /packages/All/netcdf3-3.6.3_4.txz Installing netcdf3-3.6.3_4... done ===> Returning to build of minc2-2.2.00_1 ===> minc2-2.2.00_1 depends on shared library: hdf5 - not found ===> Verifying install for hdf5 in /usr/ports/science/hdf5 ===> Installing existing package /packages/All/hdf5-1.6.9_2.txz Installing hdf5-1.6.9_2... done ===> Returning to build of minc2-2.2.00_1 =========================================================================== =================================================== ===> Configuring for minc2-2.2.00_1 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/m4/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/configure ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/minc2/work/.build -- The C compiler identification is Clang 3.3.0 -- The CXX compiler identification is Clang 3.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Found NetCDF headers: /usr/local/include -- Found NetCDF library: /usr/local/lib/libnetcdf.so -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Found components for HDF5 -- HDF5 library : /usr/local/lib/libhdf5.so -- HDF5 headers : /usr/local/include -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file sys/ndir.h - not found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file values.h -- Looking for include file values.h - not found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file vfork.h -- Looking for include file vfork.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Found BISON: /usr/local/bin/bison (found version "2.7.12-4996") -- Found FLEX: /usr/bin/flex (found version "2.5.37") CMake Warning (dev) at CMakeLists.txt:334 (ADD_SUBDIRECTORY): The source directory /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc does not contain a CMakeLists.txt file. CMake does not support this case but it used to work accidentally and is being allowed for compatibility. Policy CMP0014 is not set: Input directories must have CMakeLists.txt. Run "cmake --help-policy CMP0014" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:409 (ADD_SUBDIRECTORY): The source directory /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/testdir does not contain a CMakeLists.txt file. CMake does not support this case but it used to work accidentally and is being allowed for compatibility. Policy CMP0014 is not set: Input directories must have CMakeLists.txt. Run "cmake --help-policy CMP0014" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/science/minc2/work/.build =========================================================================== =================================================== ===> Building for minc2-2.2.00_1 /usr/local/bin/cmake -H/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -B/wrkdirs/usr/ports/science/minc2/work/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/minc2.dir/build.make CMakeFiles/minc2.dir/depend cd /wrkdirs/usr/ports/science/minc2/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 /wrkdirs/usr/ports/science/minc2/work/.build /wrkdirs/usr/ports/science/minc2/work/.build /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles/minc2.dir/DependInfo.cmake Scanning dependencies of target minc2 /usr/bin/make -f CMakeFiles/minc2.dir/build.make CMakeFiles/minc2.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 14 [ 1%] Building C object CMakeFiles/minc2.dir/libsrc/ParseArgv.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/ParseArgv.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/ParseArgv.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 15 [ 2%] Building C object CMakeFiles/minc2.dir/libsrc/dim_conversion.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/dim_conversion.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/dim_conversion.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles [ 2%] Building C object CMakeFiles/minc2.dir/libsrc/image_conversion.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/image_conversion.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/image_conversion.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 16 [ 3%] Building C object CMakeFiles/minc2.dir/libsrc/minc_convenience.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/minc_convenience.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/minc_convenience.c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/minc_convenience.c:367:12: warning: enumeration values 'NC_NAT', 'NC_CHAR', and 'NC_DOUBLE' not handled in switch [-Wswitch] switch (datatype) { ^ 1 warning generated. /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 17 [ 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-I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/nd_loop.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/nd_loop.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 18 [ 5%] Building C object CMakeFiles/minc2.dir/libsrc/netcdf_convenience.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/netcdf_convenience.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/netcdf_convenience.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 19 [ 6%] Building C object CMakeFiles/minc2.dir/libsrc/time_stamp.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/time_stamp.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/time_stamp.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles [ 6%] Building C object CMakeFiles/minc2.dir/libsrc/value_conversion.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/value_conversion.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/value_conversion.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 20 [ 7%] Building C object CMakeFiles/minc2.dir/libsrc/voxel_loop.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/voxel_loop.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/voxel_loop.c /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/minc2/work/.build/CMakeFiles 21 [ 8%] Building C object CMakeFiles/minc2.dir/libsrc/hdf_convenience.c.o /usr/bin/cc -DHAVE_CONFIG_H -Dminc2_EXPORTS -O2 -pipe -fno-strict-aliasing -fPIC -O2 -pipe -fno-strict-aliasing -fPIC -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/ezminc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00 -I/wrkdirs/usr/ports/science/minc2/work/.build -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/volume_io/Include -I/usr/local/include -I/wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc2 -o CMakeFiles/minc2.dir/libsrc/hdf_convenience.c.o -c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:621:75: error: too many arguments to function call, expected 5, have 6 att_id = H5Acreate(dst_id, MI2_DIMORDER, typ_id, spc_id, H5P_DEFAULT, H5P_DEFAULT); ~~~~~~~~~ ^~~~~~~~~~~ /usr/local/include/H5Ppublic.h:24:25: note: expanded from macro 'H5P_DEFAULT' #define H5P_DEFAULT 0 ^ /usr/local/include/H5Apublic.h:41:8: note: 'H5Acreate' declared here H5_DLL hid_t H5Acreate(hid_t loc_id, const char *name, hid_t type_id, ^ /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:928:41: error: too many arguments to function call, expected 5, have 6 H5P_DEFAULT, H5P_DEFAULT); ^~~~~~~~~~~ /usr/local/include/H5Ppublic.h:24:25: note: expanded from macro 'H5P_DEFAULT' #define H5P_DEFAULT 0 ^ /usr/local/include/H5Apublic.h:41:8: note: 'H5Acreate' declared here H5_DLL hid_t H5Acreate(hid_t loc_id, const char *name, hid_t type_id, ^ /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:1110:58: warning: cast to 'void *' from smaller integer type 'hid_t' (aka 'int') [-Wint-to-pointer-cast] H5Aiterate1(var->dset_id, &i, hdf_copy_attr, (void *) new_dset_id); ^ /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:1189:73: error: too many arguments to function call, expected 5, have 6 att_id = H5Acreate(loc_id, attnm, ftyp_id, spc_id, H5P_DEFAULT, H5P_DEFAULT); ~~~~~~~~~ ^~~~~~~~~~~ /usr/local/include/H5Ppublic.h:24:25: note: expanded from macro 'H5P_DEFAULT' #define H5P_DEFAULT 0 ^ /usr/local/include/H5Apublic.h:41:8: note: 'H5Acreate' declared here H5_DLL hid_t H5Acreate(hid_t loc_id, const char *name, hid_t type_id, ^ /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:2071:74: error: too many arguments to function call, expected 5, have 6 outatt_id = H5Acreate(out_id, attr_name, typ_id, spc_id, H5P_DEFAULT, H5P_DEFAULT); ~~~~~~~~~ ^~~~~~~~~~~ /usr/local/include/H5Ppublic.h:24:25: note: expanded from macro 'H5P_DEFAULT' #define H5P_DEFAULT 0 ^ /usr/local/include/H5Apublic.h:41:8: note: 'H5Acreate' declared here H5_DLL hid_t H5Acreate(hid_t loc_id, const char *name, hid_t type_id, ^ /wrkdirs/usr/ports/science/minc2/work/minc-2.2.00/libsrc/hdf_convenience.c:2272:14: warning: implicit declaration of function 'H5Gopen2' is invalid in C99 [-Wimplicit-function-declaration] grp_id = H5Gopen2(fd, "/minc-2.0/dimensions", H5P_DEFAULT); ^ 2 warnings and 4 errors generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/minc2/work/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/minc2/work/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/minc2/work/.build *** Error code 1 Stop. make: stopped in /usr/ports/science/minc2 ===> Cleaning for minc2-2.2.00_1