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Date:      Sun, 2 Jun 2019 08:46:53 GMT
From:      pkg-fallout@FreeBSD.org
To:        stephen@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - 112amd64-default][math/octave-forge-dicom] Failed for octave-forge-dicom-0.2.2_1 in configure
Message-ID:  <201906020846.x528krCN086342@beefy9.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     stephen@FreeBSD.org
Last committer: stephen@FreeBSD.org
Ident:          $FreeBSD: head/math/octave-forge-dicom/Makefile 503259 2019-06-01 21:59:13Z stephen $
Log URL:        http://beefy9.nyi.freebsd.org/data/112amd64-default/503281/logs/octave-forge-dicom-0.2.2_1.log
Build URL:      http://beefy9.nyi.freebsd.org/build.html?mastername=112amd64-default&build=503281
Log:

=>> Building math/octave-forge-dicom
build started at Sun Jun  2 08:45:03 UTC 2019
port directory: /usr/ports/math/octave-forge-dicom
package name: octave-forge-dicom-0.2.2_1
building for: FreeBSD 112amd64-default-job-09 11.2-RELEASE-p10 FreeBSD 11.2-RELEASE-p10 amd64
maintained by: stephen@FreeBSD.org
Makefile ident:      $FreeBSD: head/math/octave-forge-dicom/Makefile 503259 2019-06-01 21:59:13Z stephen $
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=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   octave-forge-dicom-0.2.2_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[112amd64-default-job-09] Installing pkg-1.11.1...
[112amd64-default-job-09] Extracting pkg-1.11.1: .......... done
===>   octave-forge-dicom-0.2.2_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of octave-forge-dicom-0.2.2_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by octave-forge-dicom-0.2.2_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by octave-forge-dicom-0.2.2_1 for building
=> SHA256 Checksum OK for octave-forge/dicom-0.2.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by octave-forge-dicom-0.2.2_1 for building
===>  Extracting for octave-forge-dicom-0.2.2_1
=> SHA256 Checksum OK for octave-forge/dicom-0.2.2.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for octave-forge-dicom-0.2.2_1
===========================================================================
=======================<phase: build-depends  >============================
===>   octave-forge-dicom-0.2.2_1 depends on executable: octave - not found
===>   Installing existing package /packages/All/octave-5.1.0_5.txz
[112amd64-default-job-09] Installing octave-5.1.0_5...
[112amd64-default-job-09] `-- Installing GraphicsMagick-1.3.31_3,1...
[112amd64-default-job-09] |   `-- Installing freetype2-2.9.1...
[112amd64-default-job-09] |   `-- Extracting freetype2-2.9.1: .......... done
[112amd64-default-job-09] |   `-- Installing gcc8-8.3.0_2...
[112amd64-default-job-09] |   | `-- Installing binutils-2.32_1,1...
[112amd64-default-job-09] |   |   `-- Installing gettext-runtime-0.19.8.1_2...
[112amd64-default-job-09] |   |   | `-- Installing indexinfo-0.3.1...
[112amd64-default-job-09] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[112amd64-default-job-09] |   |   `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[112amd64-default-job-09] |   | `-- Extracting binutils-2.32_1,1: .......... done
[112amd64-default-job-09] |   | `-- Installing gmp-6.1.2_1...
<snip>
tcsd_mode="emulator"
tpmd_enable="YES"

To use TPM, add your_account to '_tss' group like following:

# pw groupmod _tss -m your_account
Message from dejavu-2.37_1:

Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
Message from perl5-5.28.2:

The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
Message from python27-2.7.16_1:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
Message from libinotify-20180201_1:

============================================================================

Libinotify functionality on FreeBSD is missing support for

  - detecting a file being moved into or out of a directory within the
    same filesystem
  - certain modifications to a symbolic link (rather than the
    file it points to.)

in addition to the known limitations on all platforms using kqueue(2)
where various open and close notifications are unimplemented.

This means the following regression tests will fail:

Directory notifications:
   IN_MOVED_FROM
   IN_MOVED_TO

Open/close notifications:
   IN_OPEN
   IN_CLOSE_NOWRITE
   IN_CLOSE_WRITE

Symbolic Link notifications:
   IN_DONT_FOLLOW
   IN_ATTRIB
   IN_MOVE_SELF
   IN_DELETE_SELF

Kernel patches to address the missing directory and symbolic link
notifications are available from:

https://github.com/libinotify-kqueue/libinotify-kqueue/tree/master/patches

=============================================================================
You might want to consider increasing the kern.maxfiles tunable if you plan
to use this library for applications that need to monitor activity of a lot
of files.
=============================================================================
Message from openjdk8-8.212.4.1:

======================================================================

This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and
procfs(5) mounted on /proc.

If you have not done it yet, please do the following:

	mount -t fdescfs fdesc /dev/fd
	mount -t procfs proc /proc

To make it permanent, you need the following lines in /etc/fstab:

	fdesc	/dev/fd		fdescfs		rw	0	0
	proc	/proc		procfs		rw	0	0

======================================================================
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qtchooser is a wrapper that allows selecting whether Qt4 or Qt5 binaries for
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By default, the Qt5 versions are run. It is possible to change the behavior by
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Message from qt5-sql-5.12.2:

======================================================================

To enable Qt database support, install the database plugin ports. The
following plugin ports are available:
 - databases/qt5-sqldrivers-ibase	InterBase/Firebird
 - databases/qt5-sqldrivers-mysql	MySQL
 - databases/qt5-sqldrivers-odbc	Open Database Connectivity
 - databases/qt5-sqldrivers-pgsql	PostgreSQL
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 - databases/qt5-sqldrivers-sqlite3	SQLite 3
 - databases/qt5-sqldrivers-tds		FreeTDS

======================================================================
Message from metis-5.1.0_7:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   octave-forge-dicom-0.2.2_1 depends on executable: octave - found
===>   Returning to build of octave-forge-dicom-0.2.2_1
===>   octave-forge-dicom-0.2.2_1 depends on executable: gfortran8 - found
===>   octave-forge-dicom-0.2.2_1 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[112amd64-default-job-09] Installing gmake-4.2.1_3...
[112amd64-default-job-09] Extracting gmake-4.2.1_3: .......... done
===>   octave-forge-dicom-0.2.2_1 depends on executable: gmake - found
===>   Returning to build of octave-forge-dicom-0.2.2_1
===>   octave-forge-dicom-0.2.2_1 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   octave-forge-dicom-0.2.2_1 depends on shared library: libgdcmCommon.so - not found
===>   Installing existing package /packages/All/gdcm-3.0.0.txz
[112amd64-default-job-09] Installing gdcm-3.0.0...
[112amd64-default-job-09] `-- Installing openjpeg-2.3.1...
[112amd64-default-job-09] `-- Extracting openjpeg-2.3.1: .......... done
[112amd64-default-job-09] Extracting gdcm-3.0.0: .......... done
===>   octave-forge-dicom-0.2.2_1 depends on shared library: libgdcmCommon.so - found (/usr/local/lib/libgdcmCommon.so)
===>   Returning to build of octave-forge-dicom-0.2.2_1
===>   octave-forge-dicom-0.2.2_1 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for octave-forge-dicom-0.2.2_1
configure: loading site script /usr/ports/Templates/config.site
checking build system type... amd64-portbld-freebsd11.2
checking host system type... amd64-portbld-freebsd11.2
checking target system type... amd64-portbld-freebsd11.2
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for uniq... uniq
checking for sort... sort
checking for mkoctfile... /usr/local/bin/mkoctfile
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking interpreter get_load_path... yes
checking   is_map or isstruct... isstruct
checking   valid_identifier or octave::valid_identifier... octave::valid_identifier
checking   file_stat or octave::sys::file_stat... octave::sys::file_stat
checking for cmake... no
checking for GDCM... ./configure: --find-package: not found
./configure: --find-package: not found
no
configure: WARNING: No GDCM detected using cmake - trying fallback detection
checking for gdcm headers path... not found
./configure: 1: Syntax error: Bad fd number
===>  Script "configure" failed unexpectedly.
Please report the problem to stephen@FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom-0.2.2/src/config.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1

Stop.
make: stopped in /usr/ports/math/octave-forge-dicom



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