Date: Mon, 20 May 2019 17:59:18 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r502128 - in head/biology: . mothur Message-ID: <201905201759.x4KHxIP8066933@repo.freebsd.org>
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Author: yuri Date: Mon May 20 17:59:17 2019 New Revision: 502128 URL: https://svnweb.freebsd.org/changeset/ports/502128 Log: New port: biology/mothur: Software for bioinformatics of the microbial ecology community Added: head/biology/mothur/ head/biology/mothur/Makefile (contents, props changed) head/biology/mothur/distinfo (contents, props changed) head/biology/mothur/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Mon May 20 17:12:23 2019 (r502127) +++ head/biology/Makefile Mon May 20 17:59:17 2019 (r502128) @@ -72,6 +72,7 @@ SUBDIR += minimap2 SUBDIR += molden SUBDIR += mopac + SUBDIR += mothur SUBDIR += mrbayes SUBDIR += mummer SUBDIR += muscle Added: head/biology/mothur/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/mothur/Makefile Mon May 20 17:59:17 2019 (r502128) @@ -0,0 +1,33 @@ +# $FreeBSD$ + +PORTNAME= mothur +DISTVERSIONPREFIX= v +DISTVERSION= 1.42.1-3 +DISTVERSIONSUFFIX= -gb670137a +CATEGORIES= biology + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Software for bioinformatics of the microbial ecology community + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE.md + +BUILD_DEPENDS= bash:shells/bash + +USES= gmake localbase readline shebangfix +SHEBANG_FILES= source/uchime_src/mk +USE_GITHUB= yes +ALL_TARGET= ${PORTNAME} + +BINARY_ALIAS= g++=${CXX} + +EXES= ${PORTNAME} uchime + +PLIST_FILES= ${EXES:S/^/bin\//} + +do-install: # https://github.com/mothur/mothur/issues/615 +.for e in ${EXES} + ${INSTALL_PROGRAM} ${WRKSRC}/${e} ${STAGEDIR}${PREFIX}/bin +.endfor + +.include <bsd.port.mk> Added: head/biology/mothur/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/mothur/distinfo Mon May 20 17:59:17 2019 (r502128) @@ -0,0 +1,3 @@ +TIMESTAMP = 1558374468 +SHA256 (mothur-mothur-v1.42.1-3-gb670137a_GH0.tar.gz) = fe7742102af4eb62fef75357b3a2563283e70f8ec344898f7c4396ff41309bf1 +SIZE (mothur-mothur-v1.42.1-3-gb670137a_GH0.tar.gz) = 1651578 Added: head/biology/mothur/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/mothur/pkg-descr Mon May 20 17:59:17 2019 (r502128) @@ -0,0 +1,4 @@ +This project seeks to develop a single piece of open-source, expandable software +to fill the bioinformatics needs of the microbial ecology community. + +WWW: https://www.mothur.org/
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