From owner-svn-ports-head@freebsd.org Wed Jan 23 09:31:57 2019 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id EAB3F14C092E; Wed, 23 Jan 2019 09:31:56 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 9148A6B0A4; Wed, 23 Jan 2019 09:31:56 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 871A1EDBC; Wed, 23 Jan 2019 09:31:56 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x0N9Vujf053584; Wed, 23 Jan 2019 09:31:56 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x0N9VtYh053578; Wed, 23 Jan 2019 09:31:55 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201901230931.x0N9VtYh053578@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Wed, 23 Jan 2019 09:31:55 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r491026 - in head/misc: . elki elki/files X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/misc: . elki elki/files X-SVN-Commit-Revision: 491026 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: 9148A6B0A4 X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.95 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.998,0]; NEURAL_HAM_SHORT(-0.95)[-0.950,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US]; NEURAL_HAM_LONG(-1.00)[-1.000,0] X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 23 Jan 2019 09:31:57 -0000 Author: yuri Date: Wed Jan 23 09:31:55 2019 New Revision: 491026 URL: https://svnweb.freebsd.org/changeset/ports/491026 Log: New port: misc/elki: Data mining toolkit Added: head/misc/elki/ head/misc/elki/Makefile (contents, props changed) head/misc/elki/distinfo (contents, props changed) head/misc/elki/files/ head/misc/elki/files/elki.sh.in (contents, props changed) head/misc/elki/pkg-descr (contents, props changed) Modified: head/misc/Makefile Modified: head/misc/Makefile ============================================================================== --- head/misc/Makefile Wed Jan 23 09:30:49 2019 (r491025) +++ head/misc/Makefile Wed Jan 23 09:31:55 2019 (r491026) @@ -83,6 +83,7 @@ SUBDIR += e2fsprogs-libuuid SUBDIR += elixir-mime SUBDIR += elixir-uuid + SUBDIR += elki SUBDIR += elscreen SUBDIR += erlang-mimerl SUBDIR += erlang-mimetypes Added: head/misc/elki/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/misc/elki/Makefile Wed Jan 23 09:31:55 2019 (r491026) @@ -0,0 +1,52 @@ +# $FreeBSD$ + +PORTNAME= elki +DISTVERSIONPREFIX= release +DISTVERSION= 0.7.1-1166 +DISTVERSIONSUFFIX= -gfb1fffdf3 +CATEGORIES= misc java +MASTER_SITES= LOCAL/yuri/:deps +DISTFILES= ${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX}:deps +EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Data mining toolkit + +LICENSE= AGPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE.md + +BUILD_DEPENDS= gradle:devel/gradle + +USE_JAVA= yes +USE_GITHUB= yes +GH_ACCOUNT= elki-project + +SUB_FILES= ${PORTNAME}.sh +SUB_LIST= PORTNAME=${PORTNAME} PORTVERSION=${PORTVERSION} JAVA=${JAVA} + +DEPS_CACHE_DIR= /tmp # should be ${WRKDIR}, but workaround for the gradle bug that dependency cache is not relocable: https://github.com/gradle/gradle/issues/1338 + +PLIST_FILES= bin/${PORTNAME} \ + ${JAVAJARDIR}/${PORTNAME}-${PORTVERSION}.jar + +# to rebuild the deps archive: +# 1. remove post-extract +# 2. remove --offline +# 3. remove MASTER_SITES/DISTFILES/EXTRACT_ONLY +# 4. build +# 5. package ${DEPS_CACHE_DIR}/gradle-${PORTNAME} into the deps archive and upload it +# 6. restore the removed items + +post-extract: + @cd ${DEPS_CACHE_DIR} && ${TAR} xzf ${DISTDIR}/${PORTNAME}-${DISTVERSION}-deps${EXTRACT_SUFX} + +do-build: + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \ + --gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \ + --offline --build-cache shadowJar + +do-install: + ${INSTALL_SCRIPT} ${WRKDIR}/${PORTNAME}.sh ${STAGEDIR}${PREFIX}/bin/${PORTNAME} + ${INSTALL_DATA} ${WRKSRC}/${PORTNAME}-bundle-0.7.2-SNAPSHOT.jar ${STAGEDIR}${JAVAJARDIR}/${PORTNAME}-${PORTVERSION}.jar + +.include Added: head/misc/elki/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/misc/elki/distinfo Wed Jan 23 09:31:55 2019 (r491026) @@ -0,0 +1,5 @@ +TIMESTAMP = 1548234819 +SHA256 (elki-0.7.1-1166-deps.tar.gz) = 67eb3b3d3c1b53b20f3bd47f45ea4fe523e6498f8d428f251105008a7bfb98c9 +SIZE (elki-0.7.1-1166-deps.tar.gz) = 40980776 +SHA256 (elki-project-elki-release0.7.1-1166-gfb1fffdf3_GH0.tar.gz) = 50e27a993c6a82b45fd6b179c77115fc6d233990826abdcc982a338b50ae4911 +SIZE (elki-project-elki-release0.7.1-1166-gfb1fffdf3_GH0.tar.gz) = 4909717 Added: head/misc/elki/files/elki.sh.in ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/misc/elki/files/elki.sh.in Wed Jan 23 09:31:55 2019 (r491026) @@ -0,0 +1,25 @@ +#!/bin/sh + +export LC_ALL=en_US.UTF-8 + +MEM_OPTS_SET_BY_USER="no" +for o in $@; do + case $o in + -X* ) + MEM_OPTS_SET_BY_USER="yes" + ;; + esac +done + +if [ $MEM_OPTS_SET_BY_USER = "no" ]; then + # memory options + physmem_b=$(sysctl -n hw.physmem) + physmem_mb=$((physmem_b/1024/1024)) + physmem_mb=$((physmem_mb*3/4)) # allow 3/4 of the memory + # -Xms set initial Java heap size + # -Xmx set maximum Java heap size + MEM_OPTS="-Xms512m -Xmx${physmem_mb}m" +fi + +# execute the command +%%JAVA%% $MEM_OPTS -jar %%JAVAJARDIR%%/%%PORTNAME%%-%%PORTVERSION%%.jar "$@" Added: head/misc/elki/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/misc/elki/pkg-descr Wed Jan 23 09:31:55 2019 (r491026) @@ -0,0 +1,11 @@ +ELKI is an open source (AGPLv3) data mining software written in Java. The focus +of ELKI is research in algorithms, with an emphasis on unsupervised methods in +cluster analysis and outlier detection. In order to achieve high performance and +scalability, ELKI offers data index structures such as the R*-tree that can +provide major performance gains. ELKI is designed to be easy to extend for +researchers and students in this domain, and welcomes contributions of +additional methods. ELKI aims at providing a large collection of highly +parameterizable algorithms, in order to allow easy and fair evaluation and +benchmarking of algorithms. + +WWW: https://elki-project.github.io/